EU BON ICP

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Wed, 23 Jul 2025 01:57:02 +0300

Title

Biodiversity data are sparse, biased and collected at many resolutions. So techniques are needed to combine these data and provide some clarity. This is where downscaling comes in. Downscaling predicts the occupancy of a species in a given area. That is, the number of grid squares a species is predicted to occupy in a standard grid of equally sized squares. Downscaling uses the intrinsic patterns in the spatial organization of an organism’s distributions to predict what the occupancy would be, given the occupancy at a coarser resolution.

Groom et al. (2018) tests different downscaling models on birds and plants in four countries and in different landscapes and shows which models work best. The results show that all models work similarly, irrespective of the type of organism and landscape. However, some models were biased, either under- or overestimating occupancy. However, a few models were both reliable and unbiased. This means we can automate calculation of species occupancy. Workflows can harvest data from many sources and calculate species metrics in a timely manner, potentially delivering warnings so that interventions can be made.

Species invasions, habitat degradation and mass extinctions are not a future threat, they are happening now. Understanding how we should react, and what policies we need should be underpinned by solid evidence. Imagine if we had systems where we could monitor biodiversity just like we monitor the climate in easy to understand numbers that are both accurate and sensitive to change.

Original Source:

Groom QJ, Marsh CJ, Gavish Y, Kunin WE. (2018) How to predict fine resolution occupancy from coarse occupancy data. Methods Ecol Evol.;00:1–10. https://doi.org/10.1111/2041-210X.13078

Figure 1: Comparison of downscaling performance of difference mathematical models with the percentage error from the known distribution of breeding birds of Flanders. Points above the zero line are overestimates of occupancy and under the line are underestimates. The x-axis is the prevalence of the species in Flanders.

Stemming from EU BON, new research calls for action: Overcoming the barriers to the use of conservation science in policy

Wed, 25 Apr 2018 11:24:00 +0300

Just accepted, a new paper in Conservation Letters looks at the barriers and solutions to the use of conservation science in policy. The main data used in the paper are from a global multi-lingual survey filled in by 758 research scientists, practitioners, or people in policy positions, executed as part of the EU BON project.

"The most interesting result from our study is that there is agreement (perhaps surprisingly!) between research scientists, practitioners, and people in policy positions about the main barriers preventing the use of conservation science in policy. Although barriers such as lack of policy relevant science, lack of understanding of science on the part of policy-makers, and limited awareness of policy processes from researchers, featured in the top-ten barriers included in the online survey, they were not the most highly ranked," shares lead author David C. Rose in a dedicated post on his blog Academic Optimism.

The original research is available at: https://doi.org/10.1111/conl.12564

Abstract:

Conservation policy decisions can suffer from a lack of evidence, hindering effective decision‐making. In nature conservation, studies investigating why policy is often not evidence‐informed have tended to focus on Western democracies, with relatively small samples. To understand global variation and challenges better, we established a global survey aimed at identifying top barriers and solutions to the use of conservation science in policy. This obtained the views of 758 people in policy, practice, and research positions from 68 countries across six languages. Here we show that, contrary to popular belief, there is agreement about how to incorporate conservation science into policy, and there is thus room for optimism. Barriers related to the low priority of conservation were considered to be important, while mainstreaming conservation was proposed as a key solution. Therefore, priorities should include the elaboration of public policy pathways with education initiatives that promote the importance of long‐term conservation‐compatible policies.

New EU BON research reviews the most relevant sources for European biodiversity observation data to identifying important barriers and fill gaps

Thu, 08 Mar 2018 18:45:00 +0200

Recently published in Biological Conservation, the new EU BON supported paper is titled "Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe".

Abstract:

Large quantities of biodiversity data are required to assess the current status of species, to identify drivers of population and distributional change, and to predict changes to biodiversity under future scenarios. Nevertheless, currently-available data are often not well-suited to these purposes. To highlight existing gaps, we assess the availability of species observation data in Europe, their geographic and temporal range, and their quality. We do so by reviewing the most relevant sources for European biodiversity observation data, and identifying important barriers to filling gaps. We suggest strategies, tools and frameworks to continue to fill these gaps, in addition to producing data suitable for generating Essential Biodiversity Variables (EBVs). Our review of data sources shows that only around a third of data-providers provide unrestricted data access. Particularly large geographic gaps exist in Eastern European countries and many datasets are not suitable for generating EBVs due to the absence of long-term data. We highlight examples built on recent experiences from large data integrators, publishers and networks that help to efficiently improve data availability, adopt open science principles and close existing data gaps. Future strategies must urgently consider the needs of relevant data stakeholders, particularly science- and policy-related needs, and provide incentives for data-providers. Hence, sustainable, longterm infrastructures and a European biodiversity network are needed to provide such efficient workflows, incentives for data-provision and tools.

Find the paper at: https://doi.org/10.1016/j.biocon.2017.12.024

ECOPOTENTIAL Workshop "SPACED: Using Earth Observations to Protect Natural Landscapes"

Thu, 07 Dec 2017 10:33:00 +0200

The ECOPOTENTIAL H2020 project, focusing its activities on blending Earth Observations from remote sensing, field measurements, data analysis and modeling of current and future ecosystem conditions and services, is organizing this workshop in Brussels on the 10th of January 2018, from 9.00 to 17:30.

The main objective of the workshop is to prospect the state-of-the-art of Remote Sensing as a Sentinel tool to monitor, characterize and understand the state, ongoing changes and effectiveness of conservation and management actions of natural landscapes and to facilitate an open debate among scientists and the involved Institutions. This workshop is part of the multiple events organized by the ECOPOTENTIAL Project on the week of 9th-12th of January 2018, starting on Jan 9th with the opening of the photo-exhibition with the same title, on display at the European Parliament.

Registration: http://ves.cat/emIm

Agenda: http://www.ecopotential-project.eu/images/ecopotential/img_news/Spaced-workshop-AGENDA-Jan-10-2018.pdf

Event's website: http://www.ecopotential-project.eu/2015-08-19-15-19-05/2015-10-16-13-48-29/205-spaced-using-earth-observations-to-protect-natural-landscapes.html

How to improve the science-policy interface: have your say in EKLIPSE's questionnaire

Mon, 27 Nov 2017 12:22:00 +0200

EKLIPSE is an EU-funded project that aims to develop a mechanism for supporting better informed decisions about our environment based on the best available knowledge. This short video (4 minute) explains the EKLIPSE process and you can find out more about our science-policy activities on the EKLIPSE website. The project now invites you to describe your views on how to improve the science-policy interface related to biodiversity and ecosystem services and potential ways in which you, or your background organization, would like to contribute to the EKLIPSE mechanism.

Have your say here!

Policy windows for the environment: Tips for improving the uptake of scientific knowledge

Tue, 01 Aug 2017 14:23:00 +0300

A new EU BON derived paper looks at the dynamics of science - policy dialogue, offering tips for improving the uptake of scientific knowledge.

Scientific knowledge is considered to be an important factor (alongside others) in environmental policy-making. However, the opportunity for environmentalists to influence policy can often occur within short, discrete time windows. Therefore, a piece of research may have a negligible or transformative policy influence depending on when it is presented.

These ‘policy windows’ are sometimes predictable, such as those dealing with conventions or legislation with a defined renewal period, but are often hard to anticipate. We describe four ways that environmentalists can respond to policy windows and increase the likelihood of knowledge uptake: 1) foresee (and create) emergent windows, 2) respond quickly to opening windows, 3) frame research in line with appropriate windows, and 4) persevere in closed windows. These categories are closely linked; efforts to enhance the incorporation of scientific knowledge into policy need to harness mechanisms within each.

In their new reseach the authors illustrate the main points with reference to nature conservation, but the principles are widely applicable. The open access paper is available here: http://www.sciencedirect.com/science/article/pii/S1462901117302095

Read also the article published on it by the British Ecological Society: http://www.britishecologicalsociety.org/windows-opportunity-influence-policy-four-tips-improve-uptake-scientific-knowledge/

How Ecosystem and Biodiversity data and knowledge can support the GEO objectives: EU BON’s session at the European GEO Workshop

Thu, 29 Jun 2017 14:38:00 +0300

The 11th European Projects GEO Workshop took place between 19-21 June 2017, in Helsinki, Finland, bringing together European stakeholders interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS).

Alongside the plenary (see presentations here), the conference featured 20 sessions looking at various aspects GEOSS, its objectives and their implementation.

Among those EU BON took part in a dedicated session titled ‘How Ecosystem and Biodiversity data and knowledge can support the GEO objectives’, alongside fellow projects and initiatives, and associated partners ECOPOTENTIAL, LTER-Europe, GLOBIS-B, EKLIPSE and ENEON.

Credit: F. Wetzel

The session aimed to inform about recent developments of relevant projects that focus on Ecosystems and Biodiversity and also outline how the generated data and knowledge can support the GEO objectives and inform relevant policies on a European and global scale.

.@ft_wetzel explaining the @EUBON1 approach to mobilising linked and standardised data #EGW2017 #citizenscience #harmonisation #biodiversity pic.twitter.com/jJJ5jADAzG
— Scent (@SCENT_EU) June 20, 2017

EU BON, as a now completed project, opened the session by presenting its major products in particular the European Biodiversity Portal and how current and future projects can build on the outcomes achieved.

Overall, the session gave the opportunity to learn about the different approaches of selected EU-projects that address the mobilization, integration and analysis of biodiversity and ecosystem data, their current achievements and existing barriers. Here are some of the Key Messages that emerged from the session:

For biodiversity and ecosystem approaches, European level efforts are needed to achieve comprehensive data coverage and full open access, especially for in situ data integration.
Existing European-level data portals and information platforms need to be sustained and considered as integration points for national and local data hubs.
Systematic approaches for biodiversity are needed, which means linking biotic and abiotic data and improving harmonization efforts for the whole data cycle/ workflows from data collection, analysis and dissemination for different disciplines (SBAs).
Essential (Biodiversity) Variables (EBVs) are a key concept / framework especially for monitoring / long-term observations that should be applied for all available biodiversity/ecosystem data fields.
Use examples from existing projects and networks as successful blueprints for bottom-up/user-driven approaches in GEOSS that relate to knowledge and user needs at the local scale.

EU BON comes to a formal end, but continues to live through its results

Mon, 26 Jun 2017 17:07:00 +0300

Coming to an end, after 4.5 years of hard work and dedicated research, the FP7-funded project EU BON leaves behind a basket of results to support the Group of Earth Observations (GEO) and assist researchers in their future studies.

The EU BON website will continue to exist and host relevant information for at least the next 5 years to ensure project results are easy to access and reuse, not only by EU BON researchers, but for anyone interested in the project or working in the field.

Among the major outcomes of the project, the biodiversity portal is now complete and will be hosted for the next years by CSIC. All EU BON’s tools, products, services and the Citizen Science gateway can be found there.

Additionally, about 15 of our tools will soon be included in the GEO BON’s BON-in-a-Box to ensure sustainability and exploitation of results.

All EU BON related publications are available via the project’s website. Moreover, important documents are also in a dedicated piloting RIO Open Science collection, demonstrating how next-generation publishing can ensure sustainability of results coming from along the research cycle, including data, guidelines, infographics and more.

EU BON’s success could not be possible without the professional and friendly team of consortium partners and 33 associated partners, who’ve worked hard together and have contributed in various ways and with different efforts.

Credit: Dirk Schmeller

EU BON's Final Brochure showcases selected outcomes from the project

Mon, 27 Mar 2017 18:32:00 +0300

EU BON presents its Final Brochure summarising the major outcomes of the EU-funded project EU BON "Building the European Biodiversity Observation Network" which aims to advance biodiversity knowledge by building a European gateway for biodiversity information and by integrating and harmonising a wide range of biodiversity data. Other goals of the project are the establishment and adoption of new data standards, the development of tools, the integration of advanced techniques for data analysis and the development of new approaches and strategies for future biodiversity monitoring and assessment.

The project represents a joint effort of 31 partners from 15 European countries, Israel, the Philippines, Brazil and more than 30 associated partners.

Download the full booklet here.

EU BON featured in CORDIS News: New tools to increase the accuracy of biodiversity monitoring

Mon, 27 Mar 2017 10:28:00 +0300

A recent story, featured on CORDIS News, focuses on EU BON and its achievements. Based on a recent project's publication in ‘Nature – Scientific Reports’ and information from the project, the new item discusses important project outcomes, including the European Biodiversity Portal, and their contribution to drawing a more accurate picture of current biodiversity to aid efforts for sustainable governance of natural resources.

Here is a snippet from the news feature on CORDIS:

A recent article published in the journal ‘Scientific Reports’ states, ‘Monitoring schemes provide an important source of information on biodiversity change, guiding further research, conservation assessment and planning.’ The article cites The European Biodiversity Portal, designed and implemented by the EU-funded EU BON project that offers researchers, policy-makers, and others interested in biodiversity, easy access to insights on trends and modelling techniques.

The project worked on the establishment and adoption of new data standards, the development of tools to enable collaborative research and the encouragement of citizen-scientists. As a result, EU BON, by building the European Biodiversity Observation Network, has created advanced techniques for data analysis along with new approaches for modelling and strategies for future biodiversity monitoring.

Read the full publication here.

FishBase Mirror Bimontly Update

Fri, 24 Mar 2017 05:39:14 +0200

www.fishbase.ca and www.sealifebase.ca have been updated.

Biodiversity data, novel tools and services: EU BON presents key results at its Final Meeting

Fri, 17 Mar 2017 11:39:00 +0200

Taking place from 14 to 16 March 2017, the Final EU BON Meeting served as a platform to present key outputs from the FP7 EU-funded project EU BON " Building the European Biodiversity Observation Network" which aims to advance biodiversity knowledge by building a European gateway for biodiversity information and by integrating and harmonising a wide range of biodiversity data.

Hosted by the Royal Belgian Institute of Natural Sciences in Brussels and at the stunning backdrop of Botanic Garden in Meise, EU BON partners met with stakeholders from research, European policy and citizen science to learn about the project's results and outputs and to discuss the future of a European Biodiversity Observation Network.

Credit: Donat Agosti

EU BON represents a joint effort of 31 partners from 15 European countries, Israel, the Philippines, Brazil and more than 30 associated partners. The project worked on the establishment and adoption of new data standards, the development of tools, the integration of advanced techniques for data analysis and the development of new approaches and strategies for future biodiversity monitoring and assessment.

Group Photo; Credit: D. Schmeller

At the Final Meeting participants had the opportunity to learn about and test products and services developed by project members during the period 2012-2017. These include a range of tools for data analysis, such as GeoCAT -- a tool that performs rapid geospatial analysis to ease the process of Red Listing taxa and AquaMaps -- a toolkit that models the distribution and makes predictions of where aquatic species occur naturally. Another group of tools -- the GBIF Integrated Toolkit and ARPHA-BioDiv facilitates the process of data sharing, integration and publishing.

Among the services presented, worthy of special mention is the EU BON Unified Taxonomic Information Service (UTIS) that allows the running of a federated search on multiple European taxonomic checklists by scientific name or vernacular name strings. These include the Pan-European Species directories Infrastructure (EU-Nomen), the European Nature Information System (EUNIS), the Catalogue of Life, the World Register of Marine Species (WoRMS), the GBIF Checklist Bank and the Plazi Treatment Bank.

All these web applications are bound together under the umbrella of the EU BON European Biodiversity Portal, with highly relevant contributions to the aims of the Group on Earth Observation's Biodiversity Observation Network (GEO BON). Besides applied tools and software, the portal also serves as an online library for manuals, guidelines, factsheets, case studies, policy recommendations and other documents.

Learn more about these tools in our Final Brochure.

For live updates, follow EU BON on Twitter, or like us on Facebook. See the live Tweet feed from the meeting at #eubongm.

New EU BON Forum Paper discusses legitimacy of reusing images from scientific papers addressed

Fri, 17 Mar 2017 11:24:00 +0200

The discipline of taxonomy is highly reliant on previously published photographs, drawings and other images as biodiversity data. Inspired by the uncertainty among taxonomists, a team, representing both taxonomists and experts in rights and copyright law, has traced the role and relevance of copyright when it comes to images with scientific value. Their discussion and conclusions are published in the latest paper added in the EU BON Collection in the open science journal Research Ideas and Outcomes (RIO).

Taxonomic papers, by definition, cite a large number of previous publications, for instance, when comparing a new species to closely related ones that have already been described. Often it is necessary to use images to demonstrate characteristic traits and morphological differences or similarities. In this role, the images are best seen as biodiversity data rather than artwork. According to the authors, this puts them outside the scope, purposes and principles of Copyright. Moreover, such images are most useful when they are presented in a standardized fashion, and lack the artistic creativity that would otherwise make them 'copyrightable works'.

"It follows that most images found in taxonomic literature can be re-used for research or many other purposes without seeking permission, regardless of any copyright declaration," says Prof. David J. Patterson, affiliated with both Plazi and the University of Sydney.

Nonetheless, the authors point out that, "in observance of ethical and scholarly standards, re-users are expected to cite the author and original source of any image that they use." Such practice is "demanded by the conventions of scholarship, not by legal obligation," they add.

However, the authors underline that there are actual copyrightable visuals, which might also make their way to a scientific paper. These include wildlife photographs, drawings and artwork produced in a distinctive individual form and intended for other than comparative purposes, as well as collections of images, qualifiable as databases in the sense of the European Protection of Databases directive.

In their paper, the scientists also provide an updated version of the Blue List, originally compiled in 2014 and comprising the copyright exemptions applicable to taxonomic works. In their Extended Blue List, the authors expand the list to include five extra items relating specifically to images.

"Egloff, Agosti, et al. make the compelling argument that taxonomic images, as highly standardized 'references for identification of known biodiversity,' by necessity, lack sufficient creativity to qualify for copyright. Their contention that 'parameters of lighting, optical and specimen orientation' in biological imaging must be consistent for comparative purposes underscores the relevance of the merger doctrine for photographic works created specifically as scientific data," comments on the publication Ms. Gail Clement, Head of Research Services at the Caltech Library.

"In these cases, the idea and expression are the same and the creator exercises no discretion in complying with an established convention. This paper is an important contribution to the literature on property interests in scientific research data - an essential framing question for legal interoperability of research data," she adds.

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Original source:

Egloff W, Agosti D, Kishor P, Patterson D, Miller J (2017) Copyright and the Use of Images as Biodiversity Data. Research Ideas and Outcomes 3: e12502. https://doi.org/10.3897/rio.3.e12502

February 2017 mirror update of SeaLifeBase in CA server

Wed, 15 Mar 2017 06:13:10 +0200

SeaLifeBase in CA server (www.sealifebase.ca) has been updated to date.

EEA Report: Climate change, impacts and vulnerability in Europe 2016

Mon, 06 Mar 2017 11:21:00 +0200

Europe’s regions are facing rising sea levels and more extreme weather, such as more frequent and more intense heatwaves, flooding, droughts and storms due to climate change, according to the latest European Environment Agency report published on 25 Jan 2017. The report assesses the latest trends and projections on climate change and its impacts across Europe and finds that better and more flexible adaptation strategies, policies and measures will be crucial to lessen these impacts.

Find a summary of the report's Key Findings, or download the full report.

Latest in our RIO Collection: Guidelines for scholarly publishing of biodiversity data from Pensoft and EU BON

Wed, 01 Mar 2017 17:43:00 +0200

While development and implementation of data publishing and sharing practices and tools have long been among the core activities of the academic publisher Pensoft, it is well-understood that as part of scholarly publishing, open data practices are also currently in transition, and hence, require a lot of collaborative and consistent efforts to establish.

Based on Pensoft's experience, and elaborated and updated during the Framework Program 7 EU BON project, a new paper published in the EU BON dedicated collection in the open science journal Research Ideas and Outcomes (RIO), outlines policies and guidelines for scholarly publishing of biodiversity and biodiversity-related data. Newly accumulated knowledge from large-scale international efforts, such as FORCE11 (Future of Research Communication and e-Scholarship), CODATA (The Committee on Data for Science and Technology), RDA (Research Data Alliance) and others, is also included in the Guidelines.

The present paper discusses some general concepts, including a definition of datasets, incentives to publish data and licences for data publishing. Furthermore, it defines and compares several routes for data publishing, namely: providing supplementary files to research articles; uploading them on specialised open data repositories, where they are linked to the research article; publishing standalone data papers; or making use of integrated narrative and data publishing through online import/download of data into/from manuscripts, such as the workflow provided by the Biodiversity Data Journal. Among the guidelines, there are also comprehensive instructions on preparation and peer review of data intended for publication.

Although currently available for journals using the developed by Pensoft journal publishing platform ARPHA, these strategies and guidelines could be of use for anyone interested in biodiversity data publishing.

Apart from paving the way for a whole new approach in data publishing, the present paper is also a fine example of science done in the open, having been published along with its two pre-submission public peer reviews. The reviews by Drs. Robert Mesibov and Florian Wetzel are both citable via their own Digital Object Identifiers (DOIs).

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Original source:

Penev L, Mietchen D, Chavan V, Hagedorn G, Smith V, Shotton D, Ó Tuama É, Senderov V, Georgiev T, Stoev P, Groom Q, Remsen D, Edmunds S (2017) Strategies and guidelines for scholarly publishing of biodiversity data. Research Ideas and Outcomes 3: e12431. https://doi.org/10.3897/rio.3.e12431

Setting temporal baselines for biodiversity could be an impediment for capturing the full impact of anthropogenic pressures

Tue, 31 Jan 2017 13:42:00 +0200

Published just recently, a new open access EU BON article discusses the need for additional research efforts beyond standard biodiversity monitoring to reconstruct the impacts of major anthropogenic pressures and to identify meaningful temporal baselines for biodiversity.

The article, published in Scientific Reports, reports on the temporal baselines that could be drawn from biodiversity monitoring schemes in Europe and compares those with the rise of important anthropogenic pressures.

With most biodiversity monitoring schemes initiated late in the 20th century, well after anthropogenic pressures had already reached half of their current magnitude, the team of scientists found that setting temporal baselines from biodiversity monitoring data would underestimate the full range of impacts of major anthropogenic pressures.

The authors stress that these limitations need to be explicitly acknowledged when designing management strategies and policies as they seriously constrain our ability to identify relevant conservation targets aimed at restoring or reversing biodiversity losses.

Find out more in the original research paper:

Mihoub J B, Henle K, Titeux N, Brotons L, Brummitt N A, Schmeller D S (2017) Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports. http://dx.doi.org/10.1038/srep41591

Save the date for EU BON’s Final Project Meeting!

Fri, 20 Jan 2017 18:38:00 +0200

The Final EU BON Meeting is scheduled to take place from 14-16 March 2017 at the Royal Belgian Institute of Natural Sciences in Brussels and at the stunning backdrop of Botanic Garden in Meise.

EU BON invites all interested parties to mark the dates in their diaries and come to learn about the project’s results and outputs some of which are presented in this newsletter and some are yet to come.

More information is available on the Conference website: http://symposium.eubon.eu

New RIO contribution: Summary report and strategy recommendations for EU citizen science gateway for biodiversity data

Wed, 04 Jan 2017 10:19:00 +0200

A new report has been added to the dedicated EU BON Outputs Collection in the innovative RIO journal. The paper reviews biodiversity related citizen science in Europe, specifically the data mobilization aspect and gives an overview of citizen science related activities in the project EU BON.

In addition, recommendations for a Pan-European citizen science gateway and data mobilization efforts will be given, with the aim of filling in existing biodiversity data gaps. Also the EU BON citizen science gateway is described, which is a part of the European Biodiversity Portal (http://biodiversity.eubon.eu) with citizen science related products.

Citizen science is a vital element for EU BON with regards to biodiversity information sources that provide data for research and policy-making. CS data are used by many research institutes, public organisations and local data portals. CS data offer volumes of field data, which would otherwise not be possible to collect with the limited resources of research institutes and agencies. Thus one of the main targets for EU BON is to make CS data available through various efforts, for example through networking and by using new technologies for data mobilisation. Overall, one of the main goals of a common EU citizen science Gateway is to integrate CS data for European biodiversity research. EU BON also seeks to develop a strategy for achieving this goal and encourages educational aspects of citizen science through networking and the development of tools.

Original Source:

Runnel V, Wetzel F, Groom Q, Koch W, Pe’er I, Valland N, Panteri E, Kõljalg U (2016) Summary report and strategy recommendations for EU citizen science gateway for biodiversity data. Research Ideas and Outcomes 2: e11563. https://doi.org/10.3897/rio.2.e11563

The Future of the European Biodiversity Observation Network: 4th EU BON Roundtable

Wed, 21 Dec 2016 10:11:00 +0200

The 4th EU BON roundtable took place on 17 November 2016 in the Museum für Naturkunde in Berlin. Focused on the topic "Pathways to sustainability for EU BONs network of collaborators and technical infrastructure" the 35 participants discussed key questions with regards to the sustainability of the EU BON network and products, and shared their rich expertise, coming from different backgrounds ranging from science to policy.

The Roundtable brought together key European users and stakeholders, such as the European Environment Agency, UNEP GRID, and the GEO secretariat, including 27 different institutions and organisations, as well as European funded projects, infrastructures and networks that share the EU BON objectives of assembling biodiversity and ecosystem-related data and knowledge, such as Lifewatch, the European Citizen Science Association (ECSA), ECOPOTENTIAL, EKLIPSE and others.

Credit: Florian Wetzel

In her welcome address, Katrin Vohland, head of the Science Programme "Public Engagement with Science" and task lead for stakeholder engagement in EU BON explained that key lessons learnt are that:

stakeholder identification may yield unexpected results as in the case of EU BON where next to scientifically based organisation less practitioners but more citizen scientists seem to become stakeholder;
early and continuous connections are necessary, as for example to other EU initiatives and projects;
target group specific communication avoiding acronyms helps; and
the idea of teal organisations may support overcoming the limitations to make networks economically sustainable - which are important but non-monetary assets.

While former Roundtables addressed European policy, citizen science and the link to practitioners, this final EU BON Stakeholder event discussed the future and sustainability of the European biodiversity observation network and its products and tools.

Key questions for the participants were:

How can the many different EU BON products be sustained and further developed after the project ends in May 2017?
Which institutions will host the products in the future and what key products could be further developed by EU BON to meet European and global policy and research needs (e.g. for monitoring, reporting)?
How can a European Biodiversity Network as a whole be sustained in order to serve as a central infrastructure and pool of expertise for generating biodiversity data and information on a European scale?

Ideas and plans were developed to secure the sustainability and long term re-use of EU BON products. More information on the outcomes of the meeting can be found below in the minutes and the presentations given during the day.

The report form the meeting was officially published in RIO Journal as a part of the dedicated EU BON outputs collection:

Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e1187 5

For further information please contact:

Dr. Katrin Vohland, Museum für Naturkunde Berlin, Email: katrin.vohland@mfn-berlin.de

Dr. Florian Wetzel, Museum für Naturkunde Berlin, Email: florian.wetzel@mfn-berlin.de

Presentations from the meeting:

1. EU BON_RT_Katrin Vohland

2. Key achievements _ Christoph Häuser

3.1 EUBON Products_ Lauren Weatherdon

3.2 EU BON products and stakeholders_David Rose

4. EU BON and modelling tools_Bill Kunin

5. CS and EU BON tools_Bernat Claramunt

6. Businessplan_Sustainability_Dirk Schmeller

7 .EKLIPSE_EUBON_Carsten Nesshöfer-Dirk Schmeller

8. EEA - EEA_EU BON_Beate Werner

9. LifeWatch_Wouter Los_Christos Arvanitidis

10. Thoughts on Sustainability_Gary Geller

11. Biodiversity data, gaps and effors_Florian_Wetzel

12. EUBON-portal_Tim Robertson

The GEO Handbook on Biodiversity Observation Networks

Fri, 02 Dec 2016 09:59:00 +0200

Recently published the GEO Handbook on Biodiversity Observation Networks presents a powerful resource that will provide valuable guidance to those committed to protecting, sustaining and preserving biodiversity across the planet. The practical experience which GEO BON has accumulated through its own actions, and through the efforts of its network partners, is a valuable resource to biodiversity information systems everywhere—from those just starting out in places where there has previously been little information, to large operations holding vii enormous amounts of data and wishing to know how better to use it.

The Group on Earth Observations (GEO) is a voluntary international partnership of 102 governments and 92 participating organisations which share a vision of a future in which decisions and actions for the benefit of humankind are informed by coordinated, comprehensive and sustained Earth observations. GEO achieves its mission largely through self-organising communities focused on important Earth observation domains where decision-making will benefit from data that is shared broadly and openly. These communities form connected systems and networks, creating a Global Earth Observation System of Systems (GEOSS).

During its first ten-year implementation period, 2005–2015, GEO identified biodiversity as a key ‘Societal Benefit Area’, resulting in the formation of the GEO Biodiversity Observation Network, GEO BON. As GEO moves into its second, ten-year implementation period, GEO BON is recognised as one of its strongest communities. It has helped to mobilise and coordinate the data and information needed for an effective response to the global threats faced by organisms, species and ecosystems. In collaboration with international treaty bodies such as the Convention on Biological Diversity (CBD) and the Ramsar Convention on Wetlands of International Importance, GEO BON has worked with national conservation agencies and non-governmental organisations at scales from regional to global. These efforts have revealed both the benefits of working together and the challenges of such a complex, but urgent task, not least of which is filling the remaining large gaps in data and information.

Presenting latest products and outcomes: a successful GEO XIII Plenary for EU BON

Mon, 21 Nov 2016 10:02:00 +0200

The GEO XIII Plenary in St. Petersburg enjoyed a huge interest and support from many member governments, agencies and networks with around 400 registered participants this year.

Having taken place from 7-10 November 2016, the event featured a plenary, a number of side events and exhibition to give a chance to participants to meet up and discuss ideas and progress.

Left: The EU BON booth at the GEO exhibition - F. Wetzel, Ch. Häuser, H. Saarenmaa; Right: Director General J.E. Smits and Christoph Häuser; Credits: F. Wetzel

On the sidelines of the Plenary the Director-General for Research and Innovation of the European Commission, Robert-Jan Smits, personally informed himself in a conversation with Dr. Christoph Häuser, project lead of EU BON on the success and performance of the EU BON project.

At the GEO Exhibition 45 participating organizations and agencies presented their current achievements in the realm of earth observation products. EU BON was part of the European Commission’s area where GEO-related projects were shown. The project showcased its latest products as well as provided live demonstrations by Dr. Hannu Saarenmaa of the beta-version of the European Biodiversity Portal.

Taking place just before the plenary, around 20 side events gave an interesting overview of current GEO-related projects and topics. One of the side events was targeted on citizen science and EU-funded projects, where EU BON’s coordinator Christoph Häuser presented the developments of the network with regards to its citizen science activities, particularly its developments of mobile apps for collecting citizen science data.

Christoph Häuser presenting citizen science related activities of EU BON; Credit: F. Wetzel.

Learn more about the portal in the relevant policy brief, or test it at: http://biodiversity.eubon.eu/

For more information about EU BON products and research, you can also watch the project video:

Article Alert: Fostering integration between biodiversity monitoring and modelling

Fri, 07 Oct 2016 11:29:00 +0300

A new editorial, published in the Journal of Apllied Ecology looks at modelling and monitoring as methods for adaptive biodiversity management in the 21st century.

Abstract:

With increasing threats on biodiversity, informed conservation decisions need to be based on currently observed and future predicted trends of biodiversity (Pereira, Navarro & Martins 2012; Guisan et al. 2013). In this regard, two essential components supporting informed biodiversity conservation decisions are good monitoring data to assess recent and ongoing trends (Collen et al. 2013; Pereira et al. 2013) and robust models to anticipate possible future trends (Pereira et al. 2010a; Akcakaya et al. 2016). Models benefit from robust monitoring data sets, that is repeated observations of biodiversity, as they need data to be fitted or validated, but models can also help assess data representativeness (e.g. by highlighting any bias), support proper data collection (e.g. covering the relevant gradients) or be used to make more effective use of biodiversity observations (Guisan et al. 2006, 2013; Ferrier 2011).

Citizen science might be voluntary but results are not always open: Recommendations to improve data openness

Thu, 29 Sep 2016 12:24:00 +0300

Being voluntary, citizen science work is often automatically assumed to also be openly available. Contrary to the expectations, however, a recent study of the datasets available from volunteers on the Global Biodiversity Information Facility (GBIF) prove to be among the most restrictive in how they can be used.

There is a high demand for biodiversity observation data to inform conservation and environmental policy, and citizen scientists generate the vast majority of terrestrial biodiversity observations. The analysis on GBIF showed that citizen science datasets comprise 10% of datasets on GBIF, but actually account for the impressive 60% of all observations.

Invaluable as a resource for conservationists and biodiversity scientists, however, these resources unfortunately often come with restrictions for re-use. Although the vast majority of citizen science datasets did not include a license statement, as a whole, they ranked low on the openness of their data.

The assumption that voluntary data collection leads to data sharing is not only not reflecting the real situation, but also does not recognize the wishes and motivations of those who collect data, nor does it respects the crucial contributions of these data to long-term monitoring of biodiversity trends.

In a recent commentary paper, published in the Journal of Applied Ecology, EU BON partners suggest ways to improve data openness. According to the researchers citizen scientists should be recognised in ways that correspond with their motivations, in addition its is advisable that organisations that manage these data should make their data sharing policies open and explicit.

Original Research:

Groom, Q., Weatherdon, L. & Geijzendorffer, I. (2016) Is citizen science an open science in the case of biodiversity observations? Journal of Applied Ecology. DOI: 10.1111/1365-2664.12767

Article Alert: Biophysical Characterization of Protected Areas Globally through Optimized Image Segmentation and Classification

Mon, 26 Sep 2016 17:27:00 +0300

A new EU BON derived paper, publsihed recently in the journal Remote Sensing, introduces eHabitat+, a habitat modelling service supporting the European Commission’s Digital Observatory for Protected Areas.

Abstract:

Protected areas (PAs) need to be assessed systematically according to biodiversity values and threats in order to support decision-making processes. For this, PAs can be characterized according to their species, ecosystems and threats, but such information is often difficult to access and usually not comparable across regions. There are currently over 200,000 PAs in the world, and assessing these systematically according to their ecological values remains a huge challenge. However, linking remote sensing with ecological modelling can help to overcome some limitations of conservation studies, such as the sampling bias of biodiversity inventories. The aim of this paper is to introduce eHabitat+, a habitat modelling service supporting the European Commission’s Digital Observatory for Protected Areas, and specifically to discuss a component that systematically stratifies PAs into different habitat functional types based on remote sensing data. eHabitat+ uses an optimized procedure of automatic image segmentation based on several environmental variables to identify the main biophysical gradients in each PA. This allows a systematic production of key indicators on PAs that can be compared globally. Results from a few case studies are illustrated to show the benefits and limitations of this open-source tool.

Original Source:

Martínez-López, J.; Bertzky, B.; Bonet-García, F.J.; Bastin, L.; Dubois, G. Biophysical Characterization of Protected Areas Globally through Optimized Image Segmentation and Classification. Remote Sens. 2016, 8, 780. DOI: 0.3390/rs8090780

New EU ABS Regulation Workshops - Stockholm, Warsaw, Leiden, Budapest

Sat, 10 Sep 2016 15:13:00 +0300

The EU is a party to the Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilisation. The EU ABS Regulation1, which transposes into the EU legal order the compliance pillar of the Protocol, became applicable as of 12 October 2014. The principal obligations of the Regulation – i.e. Article 4 on due diligence, Article 7 on monitoring user compliance and Article 9 on checks on user compliance – will become applicable as of 12 October 2015.

In this context it is important that those who utilise genetic resources (i.e. conduct research and development on the genetic and/or biological composition of genetic resources, including through the application of biotechnology) are aware of the obligations arising from the Regulation, and that they can take the necessary measures to ensure their activities are compliant.

What's in it for you?

The EU ABS Regulation workshop aims at providing the participants with knowledge about their obligations under the EU ABS Regulation and what they practically imply for their everyday work. In the first part of the workshop, the new legal framework will be explained, providing insight into the main provisions of the EU ABS Regulation. In the second part of the workshop, participants will have a chance to put the knowledge gained into practice through interactive case studies, based on real-life examples and realistic scenarios.

The workshop should allow participants to better understand their obligations under the EU law, and to establish which steps they need to follow and which practical measures they should take when dealing with genetic resources originating from Parties to the Nagoya Protocol.

Planning and location of the workshops:

Feel free to apply for registration to one of the following workshops:

18 October: Stockholm
17 November: Warsaw
21 November: Leiden
Date to be determined: Budapest

The workshop is targeted at senior academics and experienced researchers conducting research and development on genetic resources who have an interest in gaining an essential understanding of the new legal framework in the EU, in view of the ABS Regulation becoming fully operational later this year.

Registration page: http://www.euconf.eu/abs/en/registration/index.html

Article Alert: Measuring Rao's Q diversity index from remote sensing: An open source solution

Fri, 26 Aug 2016 10:47:00 +0300

Key in ensuring the effectiveness of conservation efforts and maintaining ecosystem health, measuring biodiversity can benefit greatly when remote sensing data comes into the equation. A new EU BON related paper, published in the journal Ecological Indicators, proposes open source solutions for measuring the important Rao's Q index, when it comes to remote sensing data.

Abstract:

Measuring biodiversity is a key issue in ecology to guarantee effective indicators of ecosystem health at different spatial and time scales. However, estimating biodiversity from field observations might present difficulties related to costs and time needed. Moreover, a continuous data update for biodiversity monitoring purposes might be prohibitive. From this point of view, remote sensing represents a powerful tool since it allows to cover wide areas in a relatively low amount of time. One of the most common indicators of biodiversity is Shannon's entropy H′, which is strictly related to environmental heterogeneity, and thus to species diversity. However, Shannon's entropy might show drawbacks once applied to remote sensing data, since it considers relative abundances but it does not explicitly account for distances among pixels’ numerical values. In this paper we propose the use of Rao's Q applied to remotely sensed data, providing a straightforward R-package function to calculate it in 2D systems. We will introduce the theoretical rationale behind Rao's index and then provide applied examples based on the proposed R function.

Original Source:

Rocchini, D., Marcantonio, M., Ricotta, C. (2017). Measuring Rao's Q diversity index rom remote sensing: an open source solution. Ecological Indicators, 72: 234-238. [5years-IF: 3.649] DOI:10.1016/j.ecolind.2016.07.039

Article alert: Local biodiversity is higher inside than outside terrestrial protected areas worldwide

Mon, 15 Aug 2016 17:52:00 +0300

Are protected areas working when it comes to promoting biodivesity? A new study, published in Nature Communications, shows that local biodiversity is actually higher within, rather than outside protected areas.

Abstract:

Protected areas are widely considered essential for biodiversity conservation. However, few global studies have demonstrated that protection benefits a broad range of species. Here, using a new global biodiversity database with unprecedented geographic and taxonomic coverage, we compare four biodiversity measures at sites sampled in multiple land uses inside and outside protected areas. Globally, species richness is 10.6% higher and abundance 14.5% higher in samples taken inside protected areas compared with samples taken outside, but neither rarefaction-based richness nor endemicity differ significantly. Importantly, we show that the positive effects of protection are mostly attributable to differences in land use between protected and unprotected sites. Nonetheless, even within some human-dominated land uses, species richness and abundance are higher in protected sites. Our results reinforce the global importance of protected areas but suggest that protection does not consistently benefit species with small ranges or increase the variety of ecological niches.

Original Source:

The original article is openly accessible at:

http://dx.doi.org/10.1038/ncomms12306

Science, Business and Environment: a UNEP-GRID Conference

Fri, 05 Aug 2016 18:14:00 +0300

As a part of the celebrations of a 25th Anniversary, GRID-Warsaw is holding an international conference Science, Business and Environment. The conference will take place on 15 Sep 206 and is organized in partnership with the United Nations Environment Programme (UNEP).

The main objective is to present the state, changes and threats (hot issues) for the pan-European continent, identified in the latest UNEP report, released as part of the Global Environment Outlook series. The "GEO-6 Assessment for the pan-European region" report was published in June 2016, and first time presented at a conference of Environment Ministers on June 8, 2016 in Batumi. The conference in Warsaw will be the first event during which the report will be presented to the broader community, as well as become the subject of discussion of experts representing different backgrounds and different countries.

EU BON is partner of the conference - the conference is also connected to relevant issues of EU BON, namely collecting, sharing, and utilizing data and geoinformation tools for environmental investigations and biodiversity assessments. These topics will fill the most of a special panel session dedicated to biodiversity and be also present at the plenary opening session Environmental changes in the pan-European region - current trends and challenges. Using environmental data in science, business and administration.

For further information about the event: agenda, invited panelists, descriptions of sessions, registration form etc. please visit www.gridw.pl/geo6.

New associated partner: EU BON and EKLIPSE, working together to better link science and policy

Thu, 21 Jul 2016 14:03:00 +0300

The EU project EKLIPSE has joined our family of associated partners. The MoU was signed by Dr. Carsten Neßhöver, UFZ, on behalf of EKLIPSE project Coordinator Dr. Allan Watt (NERC-Centre for Ecology and Hydrology, Edinburgh, UK) and Dr. Anke Hoffmann, on behalf of EU BON Coordinator Dr. Christoph Häuser, during the 2016 GEO BON Open Science Conference & All Hands Meeting in Leipzig, Germany.

Dr. Carsten Neßhöver and Dr. Anke Hoffmann at the handing of the MoU; Credit: EKLIPSE

EKLIPSE is a EU project that will set up a sustainable and innovative way of knowing, networking and learning about biodiversity and ecosystem services. EKLIPSE is an unusual project in several ways, particularly:

The project is funded for four years to develop a sustainable mechanism that will be in place for many years to come.
The development of the support mechanism through the project is facilitated by project partners. Their role is to facilitate linkages between science, policy and society, through different actions, such as knowledge synthesis, identifying research priorities, and building the Network of Networks that will support the other actions.

The latest ASEAN Biodiversity Updates

Thu, 21 Jul 2016 11:04:00 +0300

The ASEAN BIODIVERSITY UPDATES are published by the ASEAN Centre for Biodiversity (ACB) to keep stakeholders informed of news about biodiversity concerns and efforts that are relevant to the ASEAN region. In its latest issue the newsletter provides an overview of the 2016 World Environment Day, as well as gives information about the new ACB headquarters at the University of the Philippines Los Baños and the organization's training programs.

A special feature gives insights on the Nusa Penida Marine Protected Area in Indonesia, followed by country-specific biodiversity news from accross Southeast Asia.

The full issue is available here.

Article Alert: Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment

Wed, 20 Jul 2016 11:16:00 +0300

The planetary boundaries framework attempts to set limits for biodiversity loss within which ecological function is relatively unaffected. In a recent article in Science Newbold et al. present a quantitative global analysis of the extent to which the proposed planetary boundary has been crossed.

Abstract:

Land use and related pressures have reduced local terrestrial biodiversity, but it is unclear how the magnitude of change relates to the recently proposed planetary boundary ("safe limit"). We estimate that land use and related pressures have already reduced local biodiversity intactness—the average proportion of natural biodiversity remaining in local ecosystems—beyond its recently proposed planetary boundary across 58.1% of the world’s land surface, where 71.4% of the human population live. Biodiversity intactness within most biomes (especially grassland biomes), most biodiversity hotspots, and even some wilderness areas is inferred to be beyond the boundary. Such widespread transgression of safe limits suggests that biodiversity loss, if unchecked, will undermine efforts toward long-term sustainable development.

The study is available at http://dx.doi/10.1126/science.aaf2201

EU BON digital identifiers for fungal species in Science

Tue, 19 Jul 2016 17:17:00 +0300

A recent article in the academic journal Science published by Prof. Urmas Kõljalg and colleagues aims to explain the possibilities for identifying species determined based on DNA samples only.

The article was published as a response to David Hibbetts paper "The invisible dimension of fungal diversity". The American mycologist Hibbett argues that huge amount of fungal species cannot be identified and described scientifically as the international code does not permit describing new species based on DNA samples derived from molecular surveys of the environment. However, the Estonian and Swedish scientists show – analysing the same data – how DNA based fungal species have been identified and communicated for several years now using database UNITE (https://unite.ut.ee).

In the forests of Laos the mushroom season has already begun. Among the mushrooms presented on these dishes one can most likely also find species scientifically yet undescribed. The digital object identifiers (DOIs) system created by the scientists in Tartu permits comunication of these species already before they have been granted scientific names. Writing about poisonous mushrooms for example helps to keep people informed, so that cases of intoxication can be avoided more often. (Photo: Urmas Kõljalg)

"Traditionally species are determined based on their morphology and anatomy, in printed books – traditional keys to nature – species are displayed on pictures and in written descriptions. But DNA of fungi can also be found in samples of soil, of leaves, of air, in these circumstances we do not actually have the fungus itself and we cannot identify it visually," Urmas Kõljalg explains the core of the matter. "In this case, species can be determined evaluating their DNA sequences."

The UNITE Species Hypotheses approach demonstrates how the DNA based fungal species can be referred to in a proper scientific manner already before they have been described formally according to the code. This can be done using unique digital object identifiers (DOIs) given to all fungal species in the UNITE database. This keeps all the references automatically connected and machine-readable by other databases as well.

"Even if the species will have its name ten years from now, the DOI code will help us go back and see, where the species was first described and who found it," Urmas Kõljalg says.

For several years now by leading species classification platforms based on DNA sequences more than half a million DOI codes have been used as identifiers of fungal species. UNITE fungal codes are used by the most influential gene bank NCBI also. The UNITE system uses a new paradigm in identifying species, this paradigm was first described by Urmas Kõljalg and colleagues in 2013.

UNITE – the global unified system for the DNA based fungal species – contains information of all the fungal species known from sequence data, hundreds of researchers from all over the world are collaborating. UNITE is hosted by PlutoF cloud, which permits creating very complex databases for various biodiversity data, including DOIs. The development of PlutoF system is supported by the Estonian research infrastructures roadmap project NATARC (http://natarc.ut.ee), EU BON (http://eubon.eu), etc. All scientists can use PlutoF for free.

Joint forces to enhance access to biodiversity monitoring data

Thu, 07 Jul 2016 18:11:00 +0300

EU projects EuMon and EU BON call out to monitoring programs to share data and expertise for building the European Biodiversity Portal.

Combining forces, two large scale EU projects, EuMon and EU BON, are set to compile the largest data collection on biodiversity monitoring activities in Europe to date. Using existing biodiversity data and metadata collected by the two projects, the initiative is a stepping stone in completing a comprehensive European Biodiversity Portal. The projects now call out to monitoring programs across the Old Continent and beyond, to join in, provide information about their schemes and share their expertise for the cause.

For its life span between 2004 and 2008 the project EU-wide monitoring methods and systems of surveillance for species and habitats of Community interest (EuMon) created Europe's most comprehensive metadata catalogue of biodiversity monitoring activities.

Started in 2012, the five-year project Building the European Biodiversity Observation Network(EU BON) has been working towards building a new European Biodiversity Portal where this information is collected, highlighted and widely shared for future research and applied biodiversity conservation. The beta version is now all set up and available to test here.

To answer knowledge gaps since the project has ended in 2008, the original EuMon monitoring meta database is being further expanded with new information on data availability and access, as well as with new remote sensing data. Previously underrepresented, the marine realm is now also included in the EuMon collection.

"Monitoring data has received a central stage in recent years, a process largely facilitated by the instalment of the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES). However, while knowledge about monitoring efforts is important, we still miss a large variety of available programs and biodiversity data", explains EuMon's Project Leader Prof. Dr. Klaus Henle, Helmholtz Centre for Environmental Research - UFZ.

"We, therefore, currently aim to increase and update the number of monitoring programs in the EuMon catalogue, as the catalogue still covers less than half of all existing programs in Europe", adds EuMon Project Coordinator, Dirk Schmeller, UFZ.

In a joint initiative EuMon and EU BON are now looking to create the opportunity for monitoring program coordinators to publish their data by using the data publishing service of the EU BON portal (data embargos also possible).

The service will provide all interested parties with a professional database platform with a large amount of implications. For example, coordinators can receive information about related monitoring programs in different countries. Initiatives could integrate their data and compare the trends and status across different countries and regions. Volunteers can find contacts about schemes in their regions they may consider to join.

Using the data publishing service of EU BON will also facilitate data sharing with the Global Biodiversity Information Facility.

"The ultimate goal of EU BON is to build a comprehensive European Biodiversity Portal that will then feed into a Global Portal currently developed by GEO BON. This initiative will provide a completely new holistic way for analyzing global trends and processes. We invite projects from across Europe to publish their datasets via the European Biodiversity Portal and become a part of this one-of-a-kind initiative", concludes Dr. Hannu Saarenmaa, University of Eastern Finland and Work Package leader in EU BON.

How to take part:

To access the EuMon database, please visit http://eumon.ckff.si/biomat. For sharing information about your monitoring program, please register here. You will then be able to provide metadata about your scheme via a simple online questionnaire. Answering the full set of questions is desirable, but not compulsory.

EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement"

Thu, 07 Jul 2016 16:09:00 +0300

The EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" was organized to present the EU BON citizen science gateway, share accomplishments of the project, promote products, raise and discuss challenges of citizen science and facilitate networking between countries, especially eastern and central European countries.

There were 33 participants from Baltic countries and Finland and EU BON partners from Norway, Spain, Israel and Brussels. First day was showcasing the citizen science initiatives in Estonia, following best practice examples from EU BON consortium. During the second day the participants got a chance to learn the tools and methods for citizen science data management by ECSA and EU BON. This was followed by world cafe style discussion about the needs of citizen science initiatives and Pan-European citizen science gateway. One of the important conclusions for Baltic countries is that there is a need for stronger collaboration and supportive infrastructure to make citizen science more effective and also deliver accessible data to research community.

Some workshop participants also took part of Tartu Mini-BioBlitz on 29th June, first BioBlitz in Estonia. BioBlitz participants observed 239 species of animals, plants and fungi .

Workshop agenda

Read a first hand report form the workshop in the two great blog posts by Egle Marija Ramanauskaite (a workshop participant from Lithuania):

http://seplute.tumblr.com/post/146841955105/citsci-overtakes-the-baltics-citizen-science

http://seplute.tumblr.com/post/146844410470/citizen-science-workshop-in-tartu-recap-of-day-2

Article Alert: Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives

Fri, 01 Jul 2016 18:23:00 +0300

A new research paper Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives published in the journal Ecological Indicators looks at the ways in which earth observation (EO) techniques may provide a solution to overcome shortcomings in biodiversity monitoring by measuring entities of interest at different spatial and temporal scales.

Abstract:

Impacts of human civilization on ecosystems threaten global biodiversity. In a changing environment, traditional in situ approaches to biodiversity monitoring have made significant steps forward to quantify and evaluate BD at many scales but still, these methods are limited to comparatively small areas. Earth observation (EO) techniques may provide a solution to overcome this shortcoming by measuring entities of interest at different spatial and temporal scales.

This paper provides a comprehensive overview of the role of EO to detect, describe, explain, predict and assess biodiversity. Here, we focus on three main aspects related to biodiversity taxonomic diversity, functional diversity and structural diversity, which integrate different levels of organization molecular, genetic, individual, species, populations, communities, biomes, ecosystems and landscapes. In particular, we discuss the recording of taxonomic elements of biodiversity through the identification of animal and plant species. We highlight the importance of the spectral traits (ST) and spectral trait variations (STV) concept for EO-based biodiversity research.

Furthermore we provide examples of spectral traits/spectral trait variations used in EO applications for quantifying taxonomic diversity, functional diversity andstructural diversity. We discuss the use of EO to monitor biodiversity and habitat quality using differ-ent remote-sensing techniques. Finally, we suggest specifically important steps for a better integrationof EO in biodiversity research.EO methods represent an affordable, repeatable and comparable method for measuring, describing,explaining and modelling taxonomic, functional and structural diversity. Upcoming sensor developmentswill provide opportunities to quantify spectral traits, currently not detectable with EO, and will surelyhelp to describe biodiversity in more detail. Therefore, new concepts are needed to tightly integrate EOsensor networks with the identification of biodiversity. This will mean taking completely new directionsin the future to link complex, large data, different approaches and models.

Original reseach:

A. Lausch, L. Bannehr, M. Beckmann, C. Boehm, H. Feilhauer, J.M. Hacker, M. Heurich, A. Jung, R. Klenke, C. Neumann, M. Pause, D. Rocchini, M.E. Schaepman, S. Schmidtlein, K. Schulz, P. Selsam, J. Settele, A.K. Skidmore, A.F. Cord, Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives, Ecological Indicators, Volume 70, November 2016, Pages 317-339, ISSN 1470-160X, http://dx.doi.org/10.1016/j.ecolind.2016.06.022

New Book: Aquatic Biodiversity Conservation and Ecosystem Services

Thu, 30 Jun 2016 18:31:00 +0300

The newly published by Springer "Aquatic Biodiversity Conservation and Ecosystem Services" volume examines the topic of local biodiversity conservation in the Asia-Pacific region, one of the most rapidly changing areas in the world. With a focus on aquatic systems, this book offers insight on the state of local biodiversity, challenges in management and conservation of biodiversity, and newly developed methods for monitoring biodiversity. In addition, because the service provided by an ecosystem for humans is interlinked with conservation, the final part is dedicated to evaluating the socioeconomic aspect of ecosystem services, with special reference to local biodiversity. In effect, all contributions provide information that is invaluable for effective conservation and sustainable use of biodiversity.

This work will interest all stakeholders in biodiversity conservation, including policy makers, NPOs, NGOs, environment-related industries, and biodiversity researchers, not only in the Asia-Pacific region, but also across the entire globe.

More information here.

New Book: Camera Trapping for Wildlife Research

Thu, 30 Jun 2016 18:25:00 +0300

Camera trapping is a powerful and now widely used tool in scientific research on wildlife ecology and management. It provides a unique opportunity for collecting knowledge, investigating the presence of animals, or recording and studying behaviour. Its visual nature makes it easy to successfully convey findings to a wide audience.

The new book provides a much-needed guide to the sound use of camera trapping for the most common ecological applications to wildlife research. Each phase involved in the use of camera trapping is covered:

- Selecting the right camera type
- Set-up and field deployment of your camera trap
- Defining the sampling design: presence/absence, species inventory, abundance; occupancy at species level; capture-mark-recapture for density estimation; behavioural studies; community-level analysis
- Data storage, management and analysis for your research topic, with illustrative examples for using R and Excel
- Using camera trapping for monitoring, conservation and public engagement.

Each chapter in this edited volume is essential reading for students, scientists, ecologists, educators and professionals involved in wildlife research or management.

Find out more in the promotional video.

About the authors

Francesco Rovero is an ecologist and conservation scientist with a PhD in animal ecology. He is currently the Curator for Tropical Biodiversity at MUSE Science Museum in Trento, Italy.

Fridolin Zimmermann is a carnivore conservation scientist with a PhD on Eurasian lynx conservation and ecology. He is currently coordinator of the large carnivore monitoring in Switzerland at Carnivore Ecology and Wildlife Management (KORA).

Collectively they have nearly 30 years of professional experience in the use of camera trapping for wildlife research, and have worked on a range of species, habitat and study types.

UNEP GEO-6 Assessment for the pan-European region released

Tue, 28 Jun 2016 11:01:00 +0300

As part of the new 6th Global Environment Outlook (GEO-6) UNEP has just released a separate Assessment for the pan-European region. The report provides an overview on the current state, trends and an outlook for the environment, and also highlights environmental factors that contribute to human health and well-being at the regional level.

Biodiversity is of central importance for human well-being and features prominently in the GEO-6 regional assessment. The state of biodiversity and ecosystems continue to give reason for major concerns and call for continued attention and increased efforts. The European Biodiversity Observation Network – EU BON – through its coordinating institution, the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science contributed significantly to this report.

Credits: UNEP/UNECE 2016, UNEP-WCMC based on IUCN (2014) data

The assessment for the pan-European region clearly indicates that biodiversity loss and ecosystem degradation is continuing in the region. Ongoing biodiversity decline and loss is particularly high in Eastern and Western Europe. Some positive developments and individual success stories offer lessons worth learning, for example developments of protected area networks such as Natura 2000 and the pan-European Emerald Network. However, an important challenge that needs urgent attention is improving availability and open access to comprehensive and integrated biodiversity data to support assessments and analysis, as well as planning and implementation of conservation efforts.

The full report can be found here: http://bit.ly/21q2ghL

UNEP press release: http://bit.ly/24A7sQN

For more information please contact:

Dr. Christoph Häuser christoph.häuser@mfn-berlin.de and Dr. Florian Wetzel florian.wetzel@mfn-berlin.de
Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrassse 43, 10115 Berlin.

Article Alert:Biodiversity scenarios neglect future land-use changes

Wed, 22 Jun 2016 11:06:00 +0300

A new opinion piece published in the journal Global Change Biology looks at the development of biodiversity scenarios and their inclusion of future land-use changes.

Abstract:

Efficient management of biodiversity requires a forward-looking approach based on scenarios that explore biodiversity changes under future environmental conditions. A number of ecological models have been proposed over the last decades to develop these biodiversity scenarios. Novel modelling approaches with strong theoretical foundation now offer the possibility to integrate key ecological and evolutionary processes that shape species distribution and community structure. Although biodiversity is affected by multiple threats, most studies addressing the effects of future environmental changes on biodiversity focus on a single threat only. We examined the studies published during the last 25 years that developed scenarios to predict future biodiversity changes based on climate, land-use and landcover change projections. We found that biodiversity scenarios mostly focus on the future impacts of climate change and largely neglect changes in land use and land cover. The emphasis on climate change impacts has increased over time and has now reached a maximum. Yet, the direct destruction and degradation of habitats through land-use and land-cover changes are among the most significant and immediate threats to biodiversity. We argue that the current state of integration between ecological and land system sciences is leading to biased estimation of actual risks and therefore constrains the implementation of forward-looking policy responses to biodiversity decline. We suggest research directions at the crossroads between ecological and environmental sciences to face the challenge of developing interoperable and plausible projections of future environmental changes and to anticipate the full range of theirpotential impacts on biodiversity. An intergovernmental platform is needed to stimulate such collaborative research efforts and to emphasize the societal and political relevance of taking up this challenge.

Original Source:

Titeux, N., Henle, K., Mihoub, J.-B., Regos, A., Geijzendorffer, I. R., Cramer, W., Verburg, P. H. and Brotons, L. (2016), Biodiversity scenarios neglect future land-use changes. Glob Change Biol, 22: 2505–2515. doi:10.1111/gcb.13272

EU BON at the 10th GEO European Projects Workshop

Wed, 15 Jun 2016 10:42:00 +0300

The 10th GEO European Projects Workshop took place from 31 May until 2 June 2016 in Berlin, Germany. Representatives from science, business and public administration met in Berlin to discuss how European Earth observation initiatives can contribute to the Global Earth Observations System of Systems (GEOSS).

The workshop, was jointly organised by the European Commission, the Federal Ministry of Transport and Digital Infrastructure of Germany, and the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science. A wide range of events gave projects the opportunity to showcase their work and findings and discuss the future of earth observations. The event also featured a series of world cafés where, in a more informal and relaxed environment, experts could discuss topics focused on different aspects and challenges for biodiversity and ecosystem observation for the next ten years.

Group photo of the participants at the 10th GEO European Projects Workshop; Credit: H. Götz

During the meeting EU BON was presented at a specialized session focusing on the "Challenges for Biodiversity and Ecosystem Observation for the Next Ten Years". EU BON’s co-ordinator Dr. Christoph Häuser alongside project partner and WP2 leader Dr. Hannu Saarenmaa presented the latest project developments and results.

#GEPW16 @EUBON1 Christoph Häuser: gaps in biodiversity data in Europe pic.twitter.com/4j02nlUUxJ

— ENEON (@ENEONetwork) June 2, 2016

Special attention was paid to presenting and explaining the functionalities of the recently launched beta version of the EU BON European Biodiversity Portal, which aims to provide a substantial part of GEO BON’s Global Portal.

Clockwise from top left: Dr. Christoph Häuser presenting EU BON; Audience of the 10th GEO Projects Workshop; Panel at the Biodiversity and Ecosystem session; Credits: Florian Wetzel, Hwaja Götz and Anke Hoffmann.

For further information see:

Presentations

General Programme

Find out more resources on the official event webpage.

Online consultation to fill gaps in the global indicator framework for the Aichi Biodiversity Targets

Tue, 14 Jun 2016 10:45:00 +0300

The Biodiversity Indicators Partnership (BIP) Secretariat is looking for indicators to fill gaps in the global suite of biodiversity indicators and allow a full understanding of progress towards globally agreed targets.

They are inviting experts and organisations to participate in an open online consultation to fill the gaps in the global indicator framework for the Strategic Plan for Biodiversity 2011-2020. Through this short online survey they want to hear about any existing indicators (both global and sub-global in scale), indicators under development, potentially useful datasets or key experts or organisations in the fields. The main focus is on indicators that respond to the gaps in the global framework, which are listed on the attached flyer, but they are also keen to hear about any other indicators that could potentially enhance the existing indicator suite.

The consultation is open until 30 June 2016. Further information on the consultation is available in the attached flyer, the BIP website http://www.bipindicators.net/gaps, and the CBD notification SCBD/OES/RH/KNM/85710.

A new Biodiversity Portal for Europe to enhance access to monitoring data

Thu, 09 Jun 2016 17:45:00 +0300

Set to compile the largest biodiversity data collection for Europe to date, the EU-funded FP7 project Building the European Biodiversity Observation Network (EU BON) has now launched the beta-version of its European Biodiversity Portal.

Despite being a beta version, this release already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations.

Additionally, an online analytical data processing (OLAP) toolbox has been included in this release. Based on GEOSS technology, the new portal lets users harvest and simultaneously access data from several directories, including GBIF, LTER, EuMon (coming), PESI, and GEOSS sources.

Started in 2012, the five-year project EU BON has been working towards building this new European Biodiversity Portal where scattered and various information and tools are collected, highlighted and widely shared for future research.

"The ultimate goal of EU BON is to build a comprehensive European Biodiversity Portal that will then feed into a Global Portal currently developed by GEO BON. This initiative will provide a completely new holistic way for analyzing global trends and processes.", concludes Dr. Hannu Saarenmaa, University of Eastern Finland and Work Package leader in EU BON.

We invite everyone to test the new portal and send us their feedback and suggestions for improvements via our Feedback Form.

ConnectinGEO: a new EU BON associated partner

Thu, 09 Jun 2016 11:45:00 +0300

The 10th GEO European Projects Workshop that took place from 31 May - 2 June, in Berlin, was a success for EU BON in many ways. Among the significant achievements was signing a Memorandum of Understanding with the ConnectinGEO project to add this important initiative to our ever-growing list of associated partners.

The MoU handed over by EU BON coordinator Dr. Christoph Häuser to Dr. Joan Masó, coordinator of ConnectinGEO.

Handing over the MoU between Christoph Häuser, EU BON (left) and Joan Masó, ConnectinGEO (right); Credit: EU BON

ConnectinGEO is under the umbrella of GEOSS and the EU funding with the aim of linking existing coordinated Earth observation networks with the science and technology (S&T) communities, the industry sector and the GEOSS and Copernicus stakeholders. The goal is to facilitate a broader and more accessible knowledge base to support the needs of the GEO Societal Benefit Areas (SBAs) and their users. A broad range of subjects from climate, natural resources and raw materials, to the emerging UN Sustainable Development Goals (SDGs) will be addressed.

Job Alert: ACCOBAMS Survey Initiative Project Officer

Thu, 02 Jun 2016 10:07:00 +0300

Established under the auspices of the UNEP Convention on Migratory Species (UNEP/CMS), the Agreement on the Conservation of Cetaceans of the Black Sea, Mediterranean Sea and contiguous Atlantic area (ACCOBAMS) is an Intergovernmental Agreement aimed at achieving and maintaining a favorable conservation status for cetaceans though the implementation of coordinated measures.

The Secretariat of ACCOBAMS, based in Monaco, ensures the coordination of the Agreement implementation and provides assistance to the Contracting Parties. In this context, the Secretariat is working on the development of an initiative aimed at responding to the ACCOBAMS strategic objective on improving the understanding of the conservation status of cetaceans at the Mediterranean/Black Sea macroregional level (the "ACCOBAMS Survey Initiative" – ASI).

The overall coordination of the project is provided by the ACCOBAMS Secretariat, according to the mandate given by the Parties to ACCOBAMS, and under the guidance of a Steering Committee. A Scientific Coordinator will be involved in the project for specific tasks/actions related to the scientific aspects of the project.

The Project Officer will ensure the overall coordination of the "ACCOBAMS Survey Initiative" project. He/she will provide operational management of the project, under the general authority of the ACCOBAMS Executive Secretary and the supervision of the ACCOBAMS Project and Fundraising Officer. He/she will also liaise with the Scientific Coordinator.

Find out more about the requirements and how to apply for this position, from the job offer flyer.

Sharing biodiversity data: EU BON recommended tools and practices published in RIO Journal

Wed, 01 Jun 2016 09:13:00 +0300

Due to the exponential growth of biodiversity information in recent years, the questions of how to mobilize such vast amounts of data has become more tangible than ever. Best practices for data sharing, data publishing, and involvement of scientific and citizen communities in data generation are the main topic of a recent report by the EU FP7 project Building the European Biodiversity Observation Network (EU BON), published in the innovative Research Ideas & Outcomes (RIO) journal.

The report "Data sharing tools for Biodiversity Observation Networks" provides conceptual and practical advice for implementation of the available data sharing and data publishing tools. A detailed description of tools, their pros and cons, is followed by recommendations on their deployment and enhancement to guide biodiversity data managers in their choices.

"We believe publishing this report in RIO makes a lot of sense given the journal's innovative concept of publishing unconventional research outcomes such as project reports. This feature provides projects like EU BON with the chance to showcase their results effectively and timely. The report provides a useful practical guide for biodiversity data managers and RIO gives the project an opportunity to share findings with anyone who will make use of such information", explains Prof. Lyubomir Penev, Managing Director of Pensoft and partner in EU BON.

The new report is the second EU BON contribution featured in a dedicated project outcomes collection in RIO. Together with the data policy recommendations it provides a comprehensive set of resources for the use of biodiversity data managers and users.

"We did our biodiversity data sharing tools comparison from the perspective of the needs of the biodiversity observation community with an eye on the development of a unified user interface to this data - the European Biodiversity Portal (EBP)", add the authors.

The scientists have identified two main challenges standing in front of the biodiversity data community. On the one hand, there is a variety of tools but none can as stand alone, satisfy all the requirements of the wide variety of data providers. On the other hand, gaps in data coverage and quality demand more effort in data mobilization.

"For the time being a combination of tools combined in a new work-flow, makes the most sense for EU BON to mobilize biodiversity data," comment the report authors on their findings. "There is more research to be done and tools to be developed, but for the future there is one firm conclusion and it is that the choice of tools should be defined by the needs of those observing biodiversity - the end user community in the broadest sense - from volunteer scientists to decision makers."

Original Source:

Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe'er I, Runnel V, Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390. doi: 10.3897/rio.2.e9390

DataONE welcomes its first South American Member Node

Thu, 26 May 2016 18:12:00 +0300

EU BON partner DataONE welcomes the Program for Research on Biodiversity (PPBio) Western Amazon as its first Member Node in South America. PPBio’s Western Amazon Node data repository contains data from surveys conducted in the framework of the Research Program in Biodiversity, the Center for Integrated Studies of Biodiversity in the Amazon and partner projects.

About PPBio:

The Research Program in Biodiversity (PPBio) is structured into three components:

Biological Collections - support and development of biological collections such as herbaria, museums and living collections;
Biological Inventories - biodiversity surveys, collecting sites, metadata and data for long-term studies;
Thematic Projects - developing methods for sustainable management of biodiversity and bioprospecting.

PPBio’s research is based on spatial standardization that is crucial for answering the questions raised by decision makers, the integration of biodiversity and physical sciences and on the incorporation of local people and traditional knowledge in biodiversity research and bio-prospecting. PPBio uses a flexible, standardized, modular and economical sampling method, RAPELD, which is compatible with other existing methods and a data policy which enable their datasets to be quickly made available to other researchers. PPBio has produced several free online guides to the flora and fauna of the region and the book "Biodiversity and Integrated Environmental Monitoring" which is essential reading for anyone with questions about biodiversity whether or they also intend to collect data.

Welcoming our latest associated partner: ECSA - European Citizen Science Association

Thu, 26 May 2016 17:43:00 +0300

ECSA – the European Citizen Science Association is the latest addition to our ever growing group of associated partners. The Memorandum of Understanding handover took place at the reception of the ECSA Conference at the Museum für Naturkunde on 19 May 2016.

ECSA is a network of Citizen Science initiatives, research institutes, universities, museums, other organisations and individuals from 20 EU countries, Switzerland, Israel and the US, who are working together with the mission to connect citizens and science through fostering active participation. ECSA is a registered non-profit association administered by a Secretariat hosted at the Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Research (MfN) in Berlin, Germany.

See the full list of associated partners here.

Photo: Signing the MoU between ECSA Chair of Data, Tools and Technology Committee Dr. Jaume Piera and EU BON's Project manager Anke Hoffmann; Credit: Hwaja Götz

Job alert: Researcher and scientific project manager, DITOs

Wed, 18 May 2016 11:41:00 +0300

A new position for "Researcher and Scientific Project Manager" is opened by the Doing it Together science (DITOs) project, running under the European Citizen Science Association (ECSA) within the H2020 framework, and led by the UCL London.

The DITOs project aims to elevate public engagement with science across Europe from passive engagement with the process of developing science to an active one.

Deadline: 23.05.2016

For more information on how to apply and requirements for this position, please download the Official Job Offer.

We’ve been busy: EU BON discusses its Biodiversity Portal prototype & strategies for focused biodiversity data mobilization

Tue, 17 May 2016 17:48:00 +0300

April proved to be an eventful month for EU BON, hosting the presentation of two major project results, not only within the same month, but in the course of one week. While CSIC and partners were launching the beta-version of the long-waited Biodiversity Portal in Seville, another EU BON team was busy to search for Integrated approaches for focused biodiversity data mobilization in Stockholm.

About the Portal:

In a dedicated session at the WP2 meeting in Seville, Spain, EU BON partners had the chance to view their work for the last couple of years materialising into one of the main expected project results - the European Biodiversity Portal. That said, what was then presented on 29 April is a beta version, with the final release of the portal planned to become available in early 2017.

Participants at the Seville Workshop, April 2016. Credit: A. Hoffmann

Nonetheless, this beta version already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations.

This release also highlights the products of the EU BON project, including new methods and analyses packed in factsheets and infographics for the convenience of scientists and policy users alike. Explore the portal’s beta version here.

Suggestions of how to develop the beta portal further towards the full release are appreciated. Use the feedback form at the welcome page.

Integrated biodiversity data mobilization:

It is a challenge for Bioinformatics group in Europe and around the world to find better ways to integrate different systems and technology. In EU BON’s Task 1.4 the approach to solving this issue was to integrate different systems managing natural history collections and molecular data systems using the best techniques available.

In a dedicated workshop, which took place in Stockholm, Sweden, developers in the sphere of bioinformatics were presented with the project’s Data Mobilization Toolkit. This particular workshop was mainly focused on Docker as a tool to move towards a more integrated environment. Docker has revolutionized system integration and in the workshop the Swedish team shared their experience with dockerizing the DINA-system.

Discussions during the Stockholm workshop; Credit: Karin Karlsson

The workshop ended with a hackathon where they together explored the possibilities for using Docker in selected parts of integrating Pluto-F, JACQ and DINA.

New EU BON article looks into incorporating spatial autocorrelation in rarefaction methods

Mon, 16 May 2016 18:46:00 +0300

A new EU BON acknowledged article looks at the recently introduced in scientific literature methods for constructing Spatially Explicit Rarefaction (SER) and their implication for ecologists and conservation biologist. The research was published in the journal Ecological Indicators.

Abstract:

Recently, methods for constructing Spatially Explicit Rarefaction (SER) curves have been introduced in the scientific literature to describe the relation between the recorded species richness and sampling effort and taking into account for the spatial autocorrelation in the data. Despite these methodological advances, the use of SERs has not become routine and ecologists continue to use rarefaction methods that are not spatially explicit. Using two study cases from Italian vegetation surveys, we demonstrate that classic rarefaction methods that do not account for spatial structure can produce inaccurate results. Furthermore, our goal in this paper is to demonstrate how SERs can overcome the problem of spatial autocorrelation in the analysis of plant or animal communities. Our analyses demonstrate that using a spatially-explicit method for constructing rarefaction curves can substantially alter estimates of relative species richness. For both analyzed data sets, we found that the rank ordering of standardized species richness estimates was reversed between the two methods. We strongly advise the use of Spatially Explicit Rarefaction methods when analyzing biodiversity: the inclusion of spatial autocorrelation into rarefaction analyses can substantially alter conclusions and change the way we might prioritize or manage nature reserves.

Original Source:

Bacaro, G., Altobelli, A., Camelletti, M., Ciccarelli, D., Martellos, S., Palmer, M.W., Ricotta, C., Rocchini, D., Scheiner, S.M., Tordoni, E., Chiarucci, A. (2016). Incorporating spatial autocorrelation in rarefaction methods: implications for ecologists and conservation biologists. Ecological Indicators, 69: 233-238. [5years-IF: 3.494] doi: http://dx.doi.org/10.1016/j.ecolind.2016.04.026

Article Alert: A virtual species set for robust and reproducible species distribution modelling tests

Fri, 15 Apr 2016 11:22:00 +0300

A new EU BON acknowledging data article provides a virtual species set as a valuable tool in biodiversity monitoring.

Abstract

Predicting species potential and future distribution has become a relevant tool in biodiversity monitoring and conservation. In this data article we present the suitability map of a virtual species generated based on two bioclimatic variables, and a dataset containing more than 700,000 random observations at the extent of Europe. The dataset includes spatial attributes such as: distance to roads, protected areas, country codes, and the habitat suitability of two spatially clustered species (grassland and forest species) and a wide-spread species.

Original Source:

Garzon-Lopez, C.X., Bastin, L., Foody, G.M., Rocchini, D. (2016). A virtual species set for robust and reproducible Species Distribution Modelling tests. Data in Brief, 7: 476-479. doi: http://dx.doi.org/10.1016/j.dib.2016.02.058

Job Alert: Project Manager position open at the University of Granada

Tue, 12 Apr 2016 09:46:00 +0300

Applications for a Project Manager position for the Horizon 2020 project called COOP+ are now open at the University of Granada (Spain). This project aims to foster the cooperation among EU environmental research infrastructures (EISCAT, ICOS, EMSO, LifeWatch) and their international counterparts (NEON, TERN, AMERIFLUX, LBA, ILTER, OOI, AMISR, IMOS, etc.).

The Project Manager will be in contact with the project consortium on a daily basis to foster the cooperation among RIs. He/she will be responsible for communication with project partners (organizing meetings, workshops and videoconferences during the project duration, maintenance of web page). He/she will also participate in writing reports, timely production of deliverables as well as scientific outputs. He/she will join the "Laboratory of ecology" located in theAndalusian Institute for Earth System Research, at the University of Granada (Spain).

More infornation on the position, requirements and how to apply can be found in the offcial job offer.

Registration open for the 10th GEO European Projects Workshop

Wed, 06 Apr 2016 10:49:00 +0300

Registration for the "10th GEO European Projects Workshop" is now open until 2 May 2016. The event this year will take place in Berlin, Germany, spanning over three days from 31 May to 2 June 2016.

To register and learn more, please click here.

An EU BON-Team from the Museum für Naturkunde will also organize a Break Out Session at the event. The dedicated session #11 is called "Challenges for Biodiversity and Ecosystem Observation for the Next Ten Years", where several EU-projects will present their current and future activities with regards to biodiversity and ecosystem data, knowledge and contributions to the GEO work. This will be followed by interactive World Cafés:

World Café desk I: EEA and policy – data/model/portal needs.
World Café desk II: Follow-up joint products of GEO EU Biodiversity projects.
World Café desk III: Strengthening the in-situ approach in GEO by biodiversity and ecosystem-related projects.
World Café desk IV: Connecting with other GEO Societal Benefit Areas (SBAs), e.g. Agriculture, Health.

Potential of satellite remote sensing to monitor species diversity

Mon, 04 Apr 2016 18:07:00 +0300

The importance of measuring species diversity as an indicator of ecosystem health has been long recognized and it seems that satellite remote sensing (SRS) has proven to be one of the most cost-effective approaches to identify biodiversity hotspots and predict changes in species composition. What is the real potential of SRS and what are the pitfalls that need to be avoided to achieve the full potential of this method is the topic of a new research, published in the journal Remote Sensing in Ecology and Conservation.

The new study, supported by the FP7 funded EU project EU BON takes the assessment of diversity in plant communities as a case study. Showing the difficulties to achieve high results by relying only on field data, the paper discusses the advantages of SRS methods.

"In contrast to field-based methods, SRS allows for complete spatial coverages of the Earth's surface under study over a short period of time. Furthermore, it provides repeated measures, thus making it possible to study temporal changes in biodiversity," explains Dr. D. Rocchini from Fondazione Edmund Mach, lead author and WP deputy leader / task leader in EU BON. "In our research we provide a concise review of the potential of satellites to help track changes in plant species diversity, and provide, for the first time, an overview of the potential pitfalls associated with the misuse of satellite imagery to predict species diversity. "

Traditionally, assessment of biodiversity at local and regional scales relies on the one hand on local diversity, or the so called alpha-diversity, and on the other, on species turnover, or beta-diversity. Only in combination of these two measures can lead to an estimate of the whole diversity of an area.

While the assessment of alpha-diversity is relatively straightforward, calculation of beta-diversity could prove to be quite challenging. This is where increased collaboration between the remote sensing and biodiversity communities is needed in order to properly address future challenges and developments.

The new research shown the high potential of remote sensing in biodiversity studies while also identifying the challenges underpinning the development of this interdisciplinary field of research.

"Further sensitivity studies on environmental parameters derived from remote sensing for biodiversity mapping need to be undertaken to understand the pitfalls and impacts of different data collection processes and models. Such information, however, is crucial for a continuous global biodiversity analysis and an improved understanding of our current global challenges."concludes Dr. Rocchini.

Original Source:

Rocchini, D., Boyd, D. S., Féret, J.-B., Foody, G. M., He, K. S., Lausch, A., Nagendra, H., Wegmann, M., Pettorelli, N. (2016), Satellite remote sensing to monitor species diversity: potential and pitfalls. Remote Sensing in Ecology and Conservation, 2: 25-36. doi: 10.1002/rse2.9

Open access, data sharing, and citizen science among the topics of the last EU BON workshop

Tue, 29 Mar 2016 14:23:00 +0300

Open access to biodiversity is key for addressing pertinent ecological issues such as biodiversity loss and impacts of climate change. On 22 & 23 March 2016, experts from EU BON met with scientists, policy makers and practitioners from across Europe to discuss issues of biodiversity data sharing, curation and publishing.

The workshop, which took place in Sofia, Bulgaria, introduced participants to key concepts, demonstration and practical exercise in biodiversity data sharing using the GBIF Integrated Publishing Toolkit (IPT). Practical training sessions led by Larissa Smirnova from the Royal Museum for Central Africa (Belgium) and Kyle Braak from GBIF demonstrated the integration and management of datasets in GBIF. A step-by-step demo and practical session on how to publish a data was also featured in the workshop.

Participants at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

Special attention was paid to innovative data publishing practices in a session led by the local hosts Pensoft Publishers who introduced their ARPHA publishing platform, as well as its new journal Research Ideas & Outcomes (RIO), which publishes unconventional output types across the research cycle, including data and software descriptions, workflows, methods and many more.

PlutoF demonstrated its citizen science gateway and demonstrated how the citizen science data can be managed using the CS module. Plazi also presented their GoldenGate Imagine tool, optimized for marking up, enhancing, and extracting text and data from PDF files.

Sessions at the at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

Empowering stakeholders: EU BON publishes its roundtable reports to share know-how

Mon, 28 Mar 2016 10:58:00 +0300

Engagement with relevant political authorities and other stakeholders is of crucial importance for a research project, making sure its objectives are in tune with the real-world problems and its results provide adapted solutions. Now EU BON shares the outcomes, lessons learned and conclusions from a series of three roundtable meetings designed to identify stakeholder needs and promote collaboration between science and policy.

The collection of EU BON stakeholder roundtable reports provides a summarized overview of shared experiences gained in the three different workshops that were organized from 2013-2016. With more than 100 participants from over 20 countries altogether, the roundtable reports provide insights and exchange of ideas on highly relevant issues concerning policy, citizen science and local/regional stakeholders and its networks.

Simplified workflow from data mobilization via processing to stakeholders from the practice; Credit: Vohland et al.

The roundtables seek to build up a stakeholder dialogue with exemplary sector-specific user communities to incorporate feedback loops for the products of EU BON, as well as to develop improvements of existing biodiversity data workflows. Being published via the innovative Research Ideas & Outcomes (RIO) journal conclusions, derived knowledge and results are now made available for other projects and the wider community to ensure their re-use.

The three roundtable papers report on conclusion on highly relevant issues related to biodiversity information and its open-access and availability, data workflows and integration of citizen science as well as science-policy interfaces.

"In each of the three detailed reports of the roundtables we outline its aims, intentions, as well as results and recommendations, that were drafted based on the roundtable discussions, world café sessions and working groups. Such project results are now published for the first time in the new series of EU BON results, featured in RIO, providing a unique new medium to share experiences, outcomes and conclusions," comments Dr. Katrin Vohland, Museum für Naturkunde, Berlin.

"The three reports were published as workshop report provided by the Research Ideas & Outcomes (RIO) journal. This allows readers to publish, distribute and computationally analyse myriads of workshop reports that otherwise often get forgotten or just lost," comments Prof. Lyubomir Penev, co-founder and publisher of RIO.

Original Sources:

Rationale of the roundtables

Wetzel F, Hoffmann A, Häuser C, Vohland K (2016) 1st EU BON Stakeholder Roundtable (Brussels, Belgium): Biodiversity and Requirements for Policy. Research Ideas and Outcomes 2: e8600. doi: 10.3897/rio.2.e8600

Vohland K, Häuser C, Regan E, Hoffmann A, Wetzel F (2016) 2nd EU BON Stakeholder Roundtable (Berlin, Germany): How can a European biodiversity network support citizen science? Research Ideas and Outcomes 2: e8616. doi: 10.3897/rio.2.e8616

Vohland K, Hoffmann A, Underwood E, Weatherdon L, Bonet F, Häuser C, Wetzel F (2016) 3rd EU BON Stakeholder Roundtable (Granada, Spain): Biodiversity data workflow from data mobilization to practice. Research Ideas and Outcomes 2: e8622. doi: 10.3897/rio.2.e8622

General synthesis and lessons learnt from the three EU BON stakeholder roundtables

Making the most out of biological observations data: first of a series of EU BON publications in RIO

Tue, 22 Mar 2016 16:29:00 +0200

Creating and maintaining a biodiversity data collection has been a much-needed worldwide exercise for years, yet there is no single standard on how to do this. This has led to a myriad of datasets often incompatible with each other. To make the most out of biodiversity data and to ensure that its use for environmental monitoring and conservation is both easy and legal, EU BON published recommendations that provide consistent Europe-wide Data Publishing Guidelines and Recommendations in the EU BON Biodiversity Portal.

The report "Data Policy Recommendations for Biodiversity Data. EU BON Project Report" featured in the Research Ideas & Outcomes (RIO) journal, is the first contribution in a pioneering comprehensive project outputs compilation taking advantage of RIO's unique option to publish collections of project results.

Lyubomir Penev presenting the EU BON collection in RIO at the project's biodiversity data sharing and data publishing workshop in Sofia; Credit: Pensoft

Biodiversity data and information provide important knowledge for many biological, geological, and environmental research disciplines. Additionally, they are crucial for the development of strong environmental policies and the management of natural resources. Information management systems can bring together a wealth of information and a legacy of over 260 years of biological observations which are now dispersed in a myriad of different documents, institutions, and locations.

EU BON aims to build a comprehensive "European Biodiversity Portal" that will incorporate currently scattered Europe-wide biodiversity data, while at the same time helping to realize a substantial part of the worldwide Group on Earth Observations Biodiversity Observation Network (GEO BON). To achieve this ambitious plan, EU BON identifies the strong need for a coherent and consistent data policy in Europe to increase interoperability of data and make its re-use both easy and legal.

"Biodiversity data and information should not be treated as commercial goods, but as a common resource for the whole human society. The EU BON data sharing agreement is an important step in this direction," comments the lead author of the report Dr. Willi Egloff from Plazi, Switzerland.

In its report, the EU BON project analysis available single recommendations and guidelines on different topics. On this basis, the report provides structured guidelines for legislators, researchers, data aggregators, funding agencies and publishers to be taken into consideration towards providing standardized, easy-to-find, re-shareable and re-usable biodiversity data.

"We are extremely happy that EU BON is among the first to take advantage of our project outputs collections option in RIO. The first report they are publishing with us deals with issues of opening up data, and digitizing and collecting scientific knowledge, all close to RIO's mission to open up the research process and promote open science," says Prof. Lyubomir Penev, Founder and Publisher of RIO.

Original Source:

Egloff W, Agosti D, Patterson D, Hoffmann A, Mietchen D, Kishor P, Penev L (2016) Data Policy Recommendations for Biodiversity Data. EU BON Project Report. Research Ideas and Outcomes2: e8458. doi: 10.3897/rio.2.e8458

Shaping the EU BON Biodiversity Portal

Tue, 01 Mar 2016 15:41:00 +0200

From 26 to 28 January 2016, EU BON hosted its first Biodiversity Portal Hackathon in Seville, Spain. The event marked an important milestone for the project, paving the way towards one of the most important EU BON products - the European Biodiversity Portal.

It is a well known fact that current biodiversity observation systems and environmental datasets are unbalanced in coverage and not well integrated. This brings the need of a new system which will facilitate access to such knowledge and will effectively improve the work in the field of biodiversity observation in general.

Participants at the Biodiversity Portal Hackathon in Seville, Spain; Credit: Pensoft

The ultimate goal of EU BON is to create an European Biodiversity Portal which will collect and present biodiversity data from across Europe in a consistent and re-usable way. The portal will then feed into a global equivalent developed by the Group on Earth Observation’s Biodiversity Observation Network (GEO BON).

But what are the benefits from and what are the challenges in front of such an ambitious project?

Following the Biodiversity Data Portal hackathon, Dr. Hannu Saarenmaa, leader of WP 2 Data integration and interoperability, and Juan José Negro answered these questions in a video interview:

How to argue for biodiversity conservation: 2 guides

Tue, 01 Mar 2016 10:40:00 +0200

Recommendations from the FP7-funded EU project BESAFE

Biodiversity decline is a fact, but how can society be convinced of the benefits of biodiversity for human well being and of the necessity of further protective action? The FP7 funded EU project Biodiversity and Ecosystem Services: Arguments for our Future Environment (BESAFE) addressed this challenge to produce guidance that can help improve the way we use arguments for conservation and convincingly demonstrate the value of biodiversity to decision-makers.

Credit: Rob Bugter

Two key outputs of the project are the final brochure "How to Argue for Biodiversity Conservation More Effectively: Recommendations from the BESAFE project", including key conclusions from project publications and case studies, and an interactive online tool, which can lead stakeholders to the relevant information in a few mouse clicks.

Key recommendations of BESAFE featured in these resources are:

The success of a more integrated approach depends on stakeholder engagement. A top-down policy framework that sets goals for the protection of particular sites and species is important, but it is not enough to prevent biodiversity loss. - -- An integrated approach, seeking to 'mainstream' biodiversity concerns across all policy sectors (e.g. agriculture, forestry, water, energy, transport and urban planning) is needed.
Promote bottom-up initiatives at the local level. All stakeholders need to be actively involved in the decision-making process, which should facilitate building trust and working towards generally agreed and accepted solutions.
Tailor arguments to the audience. Arguments need to be framed to fit the values and goals of the audience, embracing the plurality of values attached to nature, and using appropriate language. For example, over-emphasising economic arguments could alienate people who are motivated mainly by ethical and moral concerns.
Use positive arguments. Positive framing of arguments to emphasise benefits is often more powerful than negative framing that focuses on threats and losses. The concept of ecosystem services is useful for emphasising positive benefits, provided that it is properly explained to stakeholders.
Use a wider range of arguments. Arguments based on the economic value of nature for humans dominate European and national policy-making, and are often seen as central to gaining high-level policy-maker support, but our results show that many decision-makers and other stakeholders also use and respond positively to ethical and moral arguments.

"We aimed to provide the essence of 4 years worth of research in an easy to read and reuse form, to maximise the potential of using the right arguments for conservation at the right time in order to successfully demonstrate the value of biodiversity to decision-makers," comments Rob Bugter, co-ordinator of the BESAFE project.

Try out the resources below:

Bugter R., Smith A.C. and the BESAFE consortium. 2015. How to argue for biodiversity conservation more effectively. Recommendations from the BESAFE project. Pensoft Publishers, Sofia, 26 pp. Available at: http://www.besafe-project.net/img/uplf/BESAFE_brochure_online_18.pdf

BESAFE web tool available at: http://tool.besafe-project.net/

MUSE part of the EU BON Associated Partners family

Tue, 23 Feb 2016 09:38:00 +0200

MUSE (Museo delle Scienze) joined EU BON's Associated Partners family in November 2015. We are now happy to present some more information about the museum and its initiative - the TEAM network.

MUSE is involved in biodiversity monitoring both locally in Trento Province, southeastern Alps, and globally. In particular, its Tropical Biodiversity Section runs a long-term biodiversity research and monitoring programme in the Udzungwa Mountains of Tanzania, an outstanding site for biological diversity and endemism. In 2009, this site became the first in Africa to enter the TEAM Network, a global programme for the standardized monitoring of biodiversity across the tropical moist forests.

Camera trap images from the MUSE site in Tanzania; Credit: MUSE – Science Museum

Started in 2002 by Conservation International (CI), the Tropical Ecology Assessment and Monitoring (TEAM) Network (http://www.teamnetwork.org/ ) – grew to a coalition in 2009 that includes CI, the Smithsonian Tropical Research Institute and the Wildlife Conservation Society. TEAM has collected and made publicly available more than 2.5 million photos from camera traps in tropical forests across the planet. With support from Hewlett Packard Enterprise, formerly Hewlett Packard Company, the TEAM Network is now able to analyze this global data set in near real-time and provide data-driven insights for improving natural resource management.

A major analysis of TEAM data was recently published in PloS Biology and caught vast media coverage as it represents the first standardized assessment of its kind for population trends of tropical forest mammals and terrestrial birds (http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002357). TEAM researchers monitored 244 species of ground-dwelling mammals and birds in 15 protected areas spanning tropical regions in Central and South America, Africa and Southeast Asia. They analyzed more than 2.5 million pictures captured by more than 1,000 camera traps and found that 17% of the animal populations they monitor increased in number while 22% remained constant and 22% decreased. The Wildlife Picture Index (WPI) Analytics System was developed in partnership with Hewlett Packard Company.

WPI is an index that summarizes the occupancy trends at community level and is an official indicator to monitor progresses against the Aichi Targets under the CBD (http://www.bipindicators.net/wildlifepictureindex).

In 2015, MUSE – Science Museum established in a Natural Park in the Brenta Dolomites (near Trento) the first site in Europe of systematic camera trapping that adopts the standardized protocol developed by the TEAM Network. This entails the sampling of 60 camera trap locations within an area of 200-250 km2 for 30 days each year, to derive data that are suitable to occupancy analysis and that can allow, as demonstrated by the recent paper in PLoS Biology, to assess population trends using state-of-the-art ecological methods.

MUSE’s scientists hope that this protocol may attract the interest of other partners within the EU BON family that may be keen to replicate this sampling at other sites in Europe.

Interview: Clint Alibrandi from REDIAM on the benefits of an European Biodiversity Portal

Mon, 22 Feb 2016 15:01:00 +0200

One of the main outputs of EU BON will be the establishment of an European Biodiversity Portal based on data collected and compiled from a variety of sources including earth observations but also observations and monitoring data from (local) sites. One of the main points of this portal is to serve as a substantial building block of a global biodiversity portal planned by the Group of Earth Observations project GEO BON.

But how will this portal be useful to stakeholders on a more local level - for example for people involved in questions connected to biodiversity across European regions? What will be the real benefits of it for biodiversity monitoring and conservation? Just a couple of weeks after the Third EU BON Stakeholder Round Table in Granada, Spain, Mr Clint Alibrandi from REDIAM (Environment and Water Agency in Andalusia) gives us his views on these questions.

Picture: Excursion to Sierra Nevada.; Credit: Katrin Vohland

Q: REDIAM shares a mission with EU BON in its attempt to collect, standardize and distribute available biodiversity data. What will be the expected benefits and challenges in the process of making this type of datasets available for society and environmental policy?

A: Among the responsibilities of the Regional Environmental Government of Andalusia are promoting Social Environmental Awareness, Managing a vast, diverse and very complex territory, Control and Mitigate any threats posed to the fragile ecosystems present in our region as well as all the responsibilities derived from the management and planning of the existing natural resources.

Considering these facts, it is necessary to be able to account for the best environmental information available. Since the early 80’s the Regional Environmental Government of Andalusia has been working on its Environmental Information System with the purpose of generating, compiling, standardizing and analyzing Environmental Information covering topics such as Climate, Water, Air Quality and Biodiversity by means of ICTs. This the REDIAM. The name comes from the Spanish Acronym "REd De Información AMbiental de Andalucía" which means the Environmental Information Network of Andalusia. It serves as a Unified Regional Environmental Information Registry.

From this effort, the information obtained by the REDIAM is made publicly available to be then employed in Decision Making processes and Management Planning on behalf of the Administrations, for Dissemination and Awareness as well as for Research purposes.

As such, it is of vital importance for the REDIAM to be able to account for updated and verifiable Information and Data Sources and this is what we consider to be the most important benefit on behalf of EU BON, as it will offer the possibility to have a higher level reference covering a larger perspective, allowing stakeholders, be it either from a local, regional or national level, to consult or work with data, tools and have reference to relevant policies concerning Biodiversity on the European scale in order to be able to better transpose them to a more local context.

Yet the greatest challenge we believe that EU BON might come to face is the fact that the different contexts that exist over the whole European territory make it very difficult to tailor tools and information formats which can cover the different priorities or needs that exist in the diverse makeup of stakeholders that exist from a local, regional and national perspective. The same can most probably apply to the feedback, queries or requests made to EU BON on behalf of the stakeholder and user community. It is never easy to reach a common base level and from the regional perspective, REDIAM has faced the same type of situations.

Q: What type of stakeholders do you hope to engage through your network - who is using your data and for what purposes?

A: The stakeholders which are currently engaged with the REDIAM consist in Universities, Research Centres, Public Bodies, Local Administrations, Private Companies just to name a few examples. There are over 150 organizations which are partners of the REDIAM, they provide relevant Environmental Information to the REDIAM and are responsible for updating the information.

And as can be expected,the information provided is as diverse as the makeup of stakeholders that are part of the REDIAM, with the following formats being made available: Cartography, Satellites Images, Databases, Reports, Statistics, Applications, Management Plans and Programmes, Orthophotos, Indicators, Studies.

Additionally the REDIAM offers the user community different alternatives in order to access the previously indicated information. The REDIAM Channel is a web portal with a Catalogue and Information Search System, OGC Services, Query and Viewer tools, Downloader. The user community is able to access its information and services. This community consists in Citizens, Universities, Public Administrations and Companies from the Public and Private Sector.

Q: Where do you see the cross section between REDIAM’s work and EU BON - what are the products from EU BON and other European projects that would be helpful for the work that you are doing?

A: The REDIAM has great interest in the following issues and we believe that EU BON would be up to the task of providing solutions and/or guidelines on how to be able to proceed to solve them:

The elaboration of a common tool for the description and localization of species throughout the European Territory. This can prove a very useful service for Environmental Impact Assessments by providing a more complete view on different species distribution on determined area.
Defining a standardized list of species which contains the taxonomically correct name for each one of them. EU BON could serve as a base reference to set guidelines for standardizing the taxonomical classification of species.
Support and guidance in defining specific biodiversity indicators as proposed by EUROSTAT, a methodological and assessment guide of some sort.

Q: In your opinion what are the three greatest benefits of a European level biodiversity portal?

A: 1) Offering an opportunity of Standardizing and Harmonizing Biodiversity related information. We all speak the same "language" when referring to Biodiversity, but it is necessary that we all be able to follow the same "rules" as well. This is the first and most important pillar we believe that a European level Biodiversity portal can bring into play.

2) It would allow for and facilitate a widespread exchange of information amongst stakeholders throughout the whole European Territory.

3) And finally, it would allow a common analysis on a European level which would provide a general assessment on how different efforts and policies are effective, value which is the real status of Biodiversity and/or specific species independently from the limit of administrative or country borders.

About REDIAM:

The Environmental Information Network REDIAM has onboard experts from the Regional Ministry of Environment in Andalusia and its Water and Environmental Agency. With a team expertise ranging from local to regional and European level and from technical know-how to regional and thematic assessment, the main aim of the network is to integrate all spatially-referenced biodiversity data produced in Andalusia. Raw data are used to generate knowledge and improve its distribution, making it accessible and comprehensible for the general public.

PhD Offer: monioring biodiversity variables from satellite remote sensing using artificial intelligence methods

Fri, 12 Feb 2016 11:30:00 +0200

The Faculty of Geo-Information Science and Earth Observation (ITC) at the University of Twente has recently launched an investment programme to strengthen its international academic fields. For 11 pioneering-multidisciplinairy projects a PhD-position is made available, three of them already are filled in. The Department of Natural Resources (NRS) specialises in advanced spatial and temporal analysis and technique development for the environment as well as sustainable agriculture.

Job Description:

The aim of this PhD project is to develop a cloud based artificial neural network for processing large remotely sensed data sets in order to generate essential biodiversity variables (as defined by Pereira et al. (2013) and Skidmore et al. (2015)). The PhD candidate, in combination with supervisors and programming support, will develop innovative artificial intelligence techniques for estimating biodiversity variables using massive cloud based data sets of satellite remotely sensed, in situ and ancillary data. Potential candidate biodiversity variables to be retrieved from satellite remote sensing include pertinent indicators of ecosystem function, ecosystem structure and species traits. The research will result in a PhD thesis.

For more information visit the official job offer.

Save the dates for the EU BON biodiversity data sharing and data publishing workshop

Tue, 09 Feb 2016 14:26:00 +0200

Are you in Eastern Europe and actively involved in monitoring and managing biodiversity data? Then the EU BON "Biodiversity data sharing and data publishing workshop" might just be the thing for you.

The event will take place on 22-23 March 2016 in Sofia, Bulgaria with focus on publishing of biodiversity data, in particular species occurrences, sample-based and citizen science data. The training will include a practical session during which participants will be assisted by experienced trainers from the EU BON project. To register and for more information, click here.

The sessions on data sharing will cover introductory overview of key concepts, demonstration and practical exercise using the GBIF Integrated Publishing Toolkit (IPT). The Global Biodiversity Information Facility (GBIF) is the world's largest initiative for enabling free access to biodiversity data via internet.

Special attention will be paid to data paper publishing led by specialists from Pensoft Publishers - a company well known among biodiversity scientists worldwide for technologically cutting-edge open access journals, such as: Research Ideas and Outcomes, ZooKeys, Biodiversity Data Journal, Nature Conservation, and a strong advocate of data publishing. Registration of data in GEO registry system will be also addressed during the workshop.

The following topics will be covered (detailed program will follow):

The data publishing landscape, gaps and mobilization efforts
Demonstration and practical session on data publishing using the GBIF IPT: step-by-step demo will show in detail (and in practice) how to publish a dataset using IPT.
The Data Publishing Toolkit at EU BON: Automated creation of data papers, data and text integrated publishing via the ARPHA Publishing Platform
Citizen Science gateway and demo of PlutoF Citizen Science module
GoldenGate Imagine tool and copyright issues
Registration of data in the GEO Registry System

Context and background:

Addressing global problems, such as biodiversity loss and impacts of climate change requires open access to data. This was concluded by world leaders at Johannesburg Summit in 2002 when they established the Group for Earth Observations (GEO). EU BON (Building the European Biodiversity Observation Network) seeks to enhance biodiversity data availability and integration, and is the European contribution to the GEO Biodiversity Observation Network.

All biodiversity databases need to be integrated in GEO. Therefore, EU BON undertakes capacity building of biodiversity communities (e.g. researchers, citizen scientists, non-governmental organisations) that are involved in collecting and disseminating biodiversity information, including monitoring initiatives.

To register and for more information, click here.

Job Offer: Two new positions at UNEP-WCMC

Tue, 02 Feb 2016 11:48:00 +0200

WCMC is a UK charity, based in Cambridge, which supports the United Nations Environment Programme. We work in collaboration with UNEP, under the banner of UNEP-WCMC. Our mission is to evaluate and highlight the many values of biodiversity and put authoritative biodiversity knowledge at the centre of decision-making. Since our establishment in the 1970s, the Centre has been at the forefront of the compilation, management, analysis and dissemination of global biodiversity information, and has an outstanding record of achievement.

Currently there are two new positions open at UNEP-WCMC:

Assistant Programme Officer – Marine Digital Products (AD 916) Deadline: 5^th February 2016
Assistant Programme Officer (AD 922) Deadline: 5^th February 2016

Interview: Dr. Mark Frenzel on LTER-Europe, ecological research and co-working with EU BON

Mon, 01 Feb 2016 11:28:00 +0200

EU BON has signed memoranda of understanding with almost thirty institutions and projects from across Europe and outside to state its desire for collaboration and exchange of expertise. Among the early partners in this list is the LTER-Europe group, focussed on the integration of scientific research and ecosystem research approaches, including the human dimension.

Dr. Mark Frenzel who took part in the EU BON Third Stakeholder roundtable in December 2015, gives an overview of his impressions from the meeting as well as his ideas on the co-work between LTER-Europe and EU BON.

Credit: Florian Wetzel

Q: The LTER-Europe network looks at conceptualizing Long-Term Ecosystem Research (LTER) as an essential component of world-wide efforts to better understand ecosystems. How is the network planning to achieve this?

A: This is / will be achieved mainly by funded project work. Actually the H2020 eLTER project is the most important backbone, an ESFRI eLTER initiative is running too. In terms of content there are several challenges which need to be addressed: (1) Harmonisation in terms of what and how is being measured at LTER sites, (2) collection and representation of metadata about sites, actors and data sets within the web tool DEIMS, (3) open access of data and DOI registration of data sets, (4) considering the human component as a major driver for changes in ecosystems by including socio-economy and socio-ecology in the LTER approach.

Q: How would EU BON and its planned European biodiversity portal be beneficial to LTER-Europe and its aims in the next years?

A: Biodiversity is not the only, but an important focus within LTER. It depends on the services and benefits connected with this portal and its long-term perspective. The most important added value I would see in an elaborated framework-based agreement on the set of "essential biodiversity variables" which will be a compromise between importance and feasibility. This selection process should be well tuned with the relevant players in this field.

Q: The LTER-Europe network includes several hundreds of sites that are collecting large amounts of data – how can this data be used for improving our knowledge of biodiversity, particularly for policy-relevant questions?

A: The big advantage (and potential) of LTER-Europe sites is the coverage in terms of geography and bioms, the general shortcoming is in the heterogeneous reasons why these sites have been set up (e.g. for monitoring air pollution) and that there is no targeted funding (in terms of a specific research question) for all sites.

Not all sites are dealing with biodiversity data. First, suitable sites need to be selected according to metadata in DEIMS (https://data.lter-europe.net/deims/). Second, data sets according to fitting topics have to be compiled (perhaps no easy task, as datasets up to now are not exhaustively documented). Site managers of representative sites (depending on the question to be addressed) could be motivated to create a common standardised data sets (needs external funding depending on the resources necessary for the task or at least a very attractive research question) responding to e.g. policy needs. Moreover, the long-term knowledge of site coordinators about the development and the important drivers of change at their sites (e.g. by assessing ecosystem services) comprises valuable meta information about the context of data sets.

Data obtained from the sites could potentially help with policy-relevant questions like status of endangered species or status of ecosystem service relevant system parameters which could be extracted from LTER sites.

Q: According to you what are the next three most urgent step in order to achieve better understanding of ecosystem services and their benefits for policy, economics and society?

A: (1) reliable data and suitable scale of data, (2) understanding the effect of scale on ecosystem services, (3) make use of large networks to approach this issue, bring the results down to a scale understandable for the layman.

About LTER-Europe:

Long-Term Ecosystem Research (LTER) is an essential component of world-wide efforts to better understand ecosystems. LTER contributes to the knowledge base informing policy and to the development of management options in response to the Grand Challenges under Global Change. From the beginning (around 2003) the design of LTER-Europe has focussed on the integration of natural sciences and ecosystem research approaches, including the human dimension. LTER-Europe was heavily involved in conceptualizing socio-ecological research (LTSER). As well as LTER Sites, LTER-Europe features LTSER Platforms, acting as test infrastructures for a new generation of ecosystem research across European environmental and socio-economic gradients.

Article Alert: New TEAM network paper looks at standardized assessment of biodiversity trends in tropical forest protected areas

Tue, 26 Jan 2016 17:42:00 +0200

The Tropical Ecology Assessment and Monitoring (TEAM) network has the aim to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment.

A recent TEAM network paper published in PLOS Biology deals with the standartization of methods in assessing biodiversity trends in tropical forest protected areas.

Abstract:

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world’s species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropicalforests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3–8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse.

Original Source:

Beaudrot L, Ahumada JA, O'Brien T, Alvarez-Loayza P, Boekee K, Campos-Arceiz A, et al. (2016) Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight. PLoS Biol 14(1): e1002357. doi:10.1371/journal.pbio.1002357

You can also read more in the paper's commentary.

3rd EU BON stakeholder roundtable: Workflow from data mobilisation to practice

Mon, 18 Jan 2016 10:24:00 +0200

The 3rd EU BON stakeholder roundtable took place from 10 to 11 December 2015 in Granada, Spain. The meeting brought together participants from global, European and regional projects, institutions, governmental organizations and universities to discuss biodiversity data workflows across different scales. Other important issues to discuss were current limitations of workflows but also tools and products from EU BON and other projects that may help to improve data collection, analysis and use in policy and practice.

Images from the workshop showing participants and group discussions; Credit: Dirk Schmeller/Florian Wetzel

The roundtable focused on EU BON test sites, workflows of data/information and the further usage for policy reporting and political processes. These issues were discussed with partners from EU BON and related biodiversity projects (LTER, GEO BON, Life Watch, Ecoscope) and stakeholders of biodiversity data (regional biodiversity networks: the environmental information network of Andalusia (Rediam), the Center for Monitoring and Assessment of Global Change (CAESCG), the Life project ADAPTAMED as well as local scientists).

On the first day, the different approaches from global (GEO BON) and European projects (EU BON, LTER, Life Watch, Ecoscope) were presented with a special emphasis on data collection, integration and analysis tools from EU BON. Furthermore, regional stakeholders pointed out their demands with regards to data mobilizations issues.

During the second day, discussions focused on the workflow of biodiversity data and the current barriers was discussed and current barriers and possible solutions to overcome the problems. Currently particularly socio-economic data is lacking as well as funding schemes to support interdisciplinary work as well as lacking capacities to address these questions.

In the World Café session, smaller groups discussed details of the workflow, particularly on (1) data mobilization, (2) data and tools, (3) implementation, and (4) upscaling.

As outcomes of the discussions at the round table, several recommendations were drafted, for example, to prioritise developed EU BON tools for further usage in the project and through the portal, to better address the user groups on different levels and provide a detailed and specific description for the tools. There are several biodiversity data workflows existing at the test sites, that could be improved by additional / existing tools, guidelines and standards from projects such as EU BON and by an enhanced communication between local sites, regional networks (as "middle-ware") and European networks.

Overall, it was agreed that a showcase for the workflow of biodiversity data from collection up to visualization (e.g. maps and using user such as the Andalusian Rediam network or/and IPBES as an example) is needed to showcase better the benefits of a European biodiversity network and enhance current functionalities by analyzing barriers and limitations in such an example of an "EU BON storyline".

Presentations:

Presentations Day 1

Presentations Day 2

Picture: Main European networks, projects and regional participants; Credits: Dirk Schmeller/EU projects logos

MUSE talk: "Biodiversity from space: old theories, new frontiers"

Mon, 18 Jan 2016 10:03:00 +0200

On December 2 EU BON partner Duccio Rocchini, the Edmund Mach Foundation, gave a talk "Biodiversity from space: old theories, new frontiers" at MUSE, who recently joined the list of EU BON associated partners. The talk was aimed at explaining how to protect the Earth's biodiversity through the use of images from space.

Introduction from the talk; Credit: Duccio Rocchini

Satellite images, space station, drones: does this have to do with biodiversity? Duccio Rocchini, researcher at the Department of Molecular Ecology and Biodiversity of the Edmund Mach Foundation explain how biodiversity can benefit from it. In his research Rocchini tries to understand how to monitor biodiversity and its changes in space and time, through the use of satellite images. Such images may in fact help to identify spots in biodiversity and provide basic data for developing models of distribution of species at risk.

Aricle Alert: Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services

Thu, 14 Jan 2016 16:45:00 +0200

A new paper "Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services" published in the journal Environmental Science & Policy looks at ways to motivate actions for biodiversity conservation and ecosystem services provision. The paper is a result of the EU FP7 funded project BIOMOT.

Abstract:

This paper analyses the possibility of building a mutually supportive dynamics between internally and externally motivated behaviour for biodiversity conservation and ecosystem services provision. To this purpose a face to face survey amongst 169 key actors of 34 highly successful and prominent biodiversity arrangements in seven EU countries was conducted. The main finding of the paper is the feasibility of combining inherently intrinsically motivated behaviours (providing enjoyment, pleasure from experimentation and learning, aesthetic satisfaction) and internalized extrinsic motivations (related to the identification with the collective goals of conservation policy) through a common set of governance features. Successful initiatives that combine internal and external motivations share the following features: inclusive decision making processes, a broad monitoring by "peers" beyond the core staff of the initiatives, and a context that is supportive for the building of autonomous actor competences. These findings are in line with the psycho-sociological theory of motivation, which shows the importance of a psycho-social context leading to a subjective perception of autonomy and a sense of competence of the actors.

Original Source:

Tom Dedeurwaerdere, Jeroen Admiraal, Almut Beringer, Flavia Bonaiuto, Lavinia Cicero, Paula Fernandez-Wulff, Janneke Hagens, Juha Hiedanpää, Paul Knights, Erica Molinario, Paolo Melindi-Ghidi, Florin Popa, Urban Šilc, Nathalie Soethe, Tiina Soininen, Jose Luis Vivero, Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services, Environmental Science & Policy, Volume 58, April 2016, Pages 1-10, ISSN 1462-9011, http://dx.doi.org/10.1016/j.envsci.2015.12.003

EU BON meets LTER Europe

Thu, 14 Jan 2016 14:22:00 +0200

From the 9th to 10th of December 2015 in Granada, Spain EU BON met representatives of LTER Europe. The aim of the meeting was to see where working programmes overlap and whether potential joint products can be identified. In addition the meeting was attended by GEO BON colleagues and included a vision of the upcoming GSEO initiative.

The first day was used to get to know each other and to present first ideas for joint developments. On the second day smaller groups concentrated on three possible joint working areas for the near future:

1) Extended test phase and application of WP3 tools and others

2) Technical/IT aspects, besides others, the use of DEIMS, PlutoF, datasets

3) Development of a manual/best practice for site-based long-term biodiversity observation and monitoring programme

Three working groups will be established and will start their work immediately.

Benchmark survey of the common plants in North-east of England to help biodiversity change monitoring

Tue, 05 Jan 2016 14:58:00 +0200

A recently completed benchmark survey of common plants provides a comprehensive dataset of vascular plant diversity and abundance in South Northumberland and Durham, contributing an additional 35,000 observations to the 200,000 observations collected by local recorders since the turn of the millennium.

Apart from contributing an updated inventory of vascular plant diversity, the survey is intended to be used as a reference point with which to identify change in the countryside and study the drivers of biodiversity change in the North-east of England.

Changes in the abundance of rare species have little impact on other species, but change in the abundance of common species can have cascading effects on whole ecosystems. The new survey provides a solid foundation that can be used to qualify the abundance of common species and compare against previous and future studies.

The distribution of heather predicted from the common plant survey data. This is one of the region's most characteristic species and one that many other organisms rely upon for food and cover.

The survey was part of the North-East Common Plants Survey Project, conducted over four years and required volunteers to go to various places. Some surveyed post-industrial brown-field sites, while others walked for miles across bleak moorland to reach sites high in the hills. Although these moors are arguably wilder and natural, the industrial wastelands turn out to be far more biodiverse.

Botanical surveying continues in the region despite the end of the project. Volunteers continue to monitor rare plants in the region and are currently working towards the next atlas of Britain and Ireland, coordinated by the Botanical Society of Britain and Ireland.

This survey is also among the first one to make use of the Integrated Publishing Toolkit (IPT) functionality, jointly developed by EU BON and GBIF, that allows the easy export and exposure of datasets to maximize their discoverability and reuse. The survey was published in the Biodiversity Data Journal, providing easy and streamlined publication of GBIF data via a variety of newly introduced plugins.

Original Source:

Groom Q, Durkin J, O'Reilly J, Mclay A, Richards A, Angel J, Horsley A, Rogers M, Young G (2015) A benchmark survey of the common plants of South Northumberland and Durham, United Kingdom. Biodiversity Data Journal 3: e7318. doi: 10.3897/BDJ.3.e7318

Article Alert: How Aphia Can Serve Both the Taxonomic Community and the Field of Biodiversity Informatics

Tue, 22 Dec 2015 18:26:00 +0200

A new article published in the Journal of Marine Science and Engineering looks at how Aphia, the core platform that underpins the World Register of Marine Species (WoRMS), can Serve the taxonomic community and the field of biodiversity informatics.

Abstract

The Aphia platform is an infrastructure designed to capture taxonomic and related data and information, and includes an online editing environment. The latter allows easy access to experts so they can update the content of the database in a timely fashion. Aphia is the core platform that underpins the World Register of Marine Species (WoRMS) and its more than 80 related global, regional and thematic species databases, but it also allows the storage of non-marine data. The content of Aphia can be consulted online, either by individual users or via machine-to-machine interactions. Aphia uses unique and stable identifiers for each available name in the database through the use of Life Science Identifiers (LSIDs). The system not only allows the storage of accepted and unaccepted names, but it also documents the relationships between names. This makes it a very powerful tool for taxonomic quality control, and also allows the linking of different pieces of information through scientific names, both within the Aphia platform and in relation to externally hosted databases. Through these LSIDs, Aphia has become an important player in the field of (marine) biodiversity informatics, allowing interactions between its own taxonomic data and e.g., biogeographic databases. Some applications in the field of biodiversity informatics encompass the coupling of species traits and taxonomy, as well as the creation of diverse, expert validated data products that can be used by policy makers, for example. Aphia also supplies (part of) its content to other data integrators and the infrastructure can be used to host orphan databases in danger of being lost.

Original Source: http://www.mdpi.com/2077-1312/3/4/1448/htm

Museum für Naturkunde & the Botanic Garden and Botanical Museum are hosting two events in June, 2016

Mon, 21 Dec 2015 18:59:00 +0200

The Museum für Naturkunde and the Botanic Garden and Botanical Museum are honored to be hosting the 31st Annual Meeting of the Society for the Preservation of Natural History Collections (SPNHC) as well as the 2nd International Conference on Biodiversity Biobanking of the Global Genome Biodiversity Network (GGBN) in Berlin from June, 20 to June, 25, 2016. The conferences will be held in parallel at the andel’s Hotel Berlin, Landsberger Allee.

SPNHC conference web site: http://www.spnhc2016.berlin/, conference theme: "Green Museum – How to practice what we preach?"
GGBN conference web site: https://meetings.ggbn.org/conference/ggbn/2016/index, conference theme: "Meeting the Challenge: How to Preserve a Cross-Section of the Tree of Life"

The registration for both conferences is now open. Please check the conference web sites for information on the conference program, field trips, social events, accommodation, registration and abstract submission. All social events and field trips as well as the opening session on Tuesday are joint events for attendees of both conferences. During lunch and coffee breaks one will have the chance to visit the vendor booths and chat with attendees of both conferences. The sessions of both conferences cover complementary topics to avoid duplications.

Integrating Biodiversity Observations to Better Track the CBD 2020 Targets: A special issue

Tue, 15 Dec 2015 05:12:00 +0200

A new special issue titled "Connecting the Dots: Integrating Biodiversity Observations to Better Track the CBD 2020 Targets" looks at Biodiversity Observatios and the ways that can be integrated into the CBD 2020 targers, for better results in biodiversity conservation.

The issue, where a number of GEO BON partners are authors, explores a wide variety of aspects of Biodiveristy Observations, including data management, integration of in-stiu data, the roles and contricutions of BONs, contextualization with the UN's Sustainable Developmen Goals, and many more.

For more information and to see what is included in the Special Issue, click here.

Joint WP2/3/4/6/7 Workshop: Packaging EU BON’s outputs into solutions for decision-makers

Fri, 04 Dec 2015 17:06:00 +0200

A joint WP2/3/4/6/7 workshop took place on 23-24 November 2015 in Cambridge, UK. The overall goal of the workshop was to identify synergies and overlapping objectives across WP3/4 and 6/7 and beyond and to thereby identify applications of EU BON’s tools to decision-making, including at the policy level.

The idea for this small, focused workshop emerged as a result of the popularity and outreach achieved by the Aquamaps North-Sea fisheries infographic, developed under WP6. This infographic has demonstrated how the AquaMaps modelling tool can help answer a clear policy or question relevant to decision-making.

Under EU BON, WP3 and WP4 have developed some powerful tools, and more are in the making. The next challenge for EU BON is to use these tools to address policy-relevant issues/questions and to link EU-BON’s modelling capacity to policy needs. Producing cutting-edge innovations is important, but their implementation for policy and decision-making needs is what has real impact.

This is what the Cambridge workshop was about - bringing different players together to identify the right ways to make EU BON innovation policy relevant.

Outcomes of the meeting:

An improved vision of how to ‘market’ EU BON’s products for end-users;
A better understanding of the end-users and the barriers that they face in accessing and using biodiversity data tools; and
Improved collaboration between EU BON Work Packages and a coherent vision for future synergies.

Butterfly monitoring: an important biodiversity loss indicator made easier to measure

Thu, 03 Dec 2015 11:24:00 +0200

Butterfly monitoring at local, national, regional, and global levels is the topic of the first of the GEO BON Technical Series reports produced to provide stakeholders with practical guidance for biodiversity conservation.

The report is jointly produced by GEO BON, EU BON, UNEP-WCMC, the German Centre for Integrative Biodiversity Research (iDiv) and Dutch Butterfly Conservation, as a follow up of a joint workshop, which took place in December 2014, to catalyse the process for the development of global butterfly monitoring guidelines and the creation of a new specialist butterfly monitoring group.

The report titled "Guidelines for Standardised Global Butterfly Monitoring" provides a suite of standard field protocols that can measure butterfly population change over various spatial and temporal scales, and that can be applied in any part of the world.

The importance of butterfly monitoring programmes lies in the fact that they provide information about population trends and changes that can be then used as indicators of biodiversity and environmental change outside of the butterfly context.

The guidelines are intended for scheme coordinators, i.e. people wishing to establish butterfly monitoring in any part of the world. The guidelines explain how to set up butterfly monitoring that can provide consistent and comparable results between sites and between years, consistent with international standards.

The ambition behind this new publication is that butterfly populations around the world are well monitored, thereby providing vital information on how these insect populations and other parts of biodiversity are changing. This information is important for feeding into local, national, regional, and global decision-making to help reduce biodiversity loss as well as raising awareness of butterflies and biodiversity in general.

Original Source:

Van Swaay, C., Regan, E., Ling, M., Bozhinovska, E., Fernandez, M., Marini-Filho, O.J., Huertas, B., Phon, C.-K., Kőrösi, A., Meerman, J., Pe’er, G., Uehara-Prado, M., Sáfián, S., Sam, L., Shuey, J., Taron, D., Terblanche, R., and Underhill, L. (2015). Guidelines for Standardised Global Butterfly Monitoring. Group on Earth Observations Biodiversity Observation Network, Leipzig, Germany. GEO BON Technical Series 1, 32pp.

Fauna Europaea presents its updated and modernized website

Wed, 02 Dec 2015 16:21:00 +0200

Europe's main zoological taxonomic index - Fauna Europaea presents its updated and modernized website at http://www.fauna-eu.org/. Scientific names and distributions of all living, currently known, multicellular, European land and freshwater animal species are available in one authoritative database.Fauna Europaea offers key information on:

Taxonomical index for European land and freshwater species
Information on the geographical distribution of many species
Database on taxonomic experts in Europe
References on literature of European species taxonomy and distribution
A browsable taxon tree

Fauna Europaea provides access to its rich and quality-checked data via this public web portal that also links to other key biodiversity services. It is installed as a taxonomic backbone in a wide range of biodiversity services and actively contributes to biodiversity informatics innovations in various initiatives and EC programs. Fauna Europaea started in 2000 as an EC funded FP5 project and provides a unique taxonomic reference for many user-groups such as scientists, governments, industries, nature conservation communities and educational programs. Fauna Europaea was formally accepted as an INSPIRE standard for Europe, as part of the European Taxonomic Backbone established in PESI. Today it is hosted by the Museum für Naturkunde in Berlin.

Europe for GEOSS: EU BON attracts high level attention at the GEO XII Plenary in Mexico City

Thu, 26 Nov 2015 10:37:00 +0200

The GEO-XII Plenary and Ministerial Summit, as well as many associated meetings and events were hosted by the Mexican Government and took place in Mexico City from 9 to 13 November 2015.

The five-day event brought together GEO member countries and organizations, as well as scientists and stakeholders from across the world to debate the next decade for GEO, and to discuss the latest developments in Earth Observation technologies and applications. The GEO-XII Plenary approved the GEO Strategic Plan 2016-2025, and the Summit endorsed a Mexico City Declaration (see: http://www.earthobservations.org/geo12.php).

Mexican music and folklore performances at the hosted conference dinner at GEO-XII; Credit: Hannu Saarenmaa

EU BON participated at GEO-XII and was represented at the European Commission Stand "Europe for GEOSS" with a poster and a short video clip. A real highlight was the visit by the European Commissioner for Research, Science and Innovation, Carlos Moedas. During his short visit, the Commissioner took specific interest in the project and spent some time discussing EU BON's relevance with the coordinator and his staff.

The EC stand "Europe for GEOSS" at GEO-XII, and discussions on EU BON with Commissioner Carlos Moedas; Credits: Jose Miguel Rubio Iglesias (left), Helmut Staudenrausch (right)

EU BON was also presented during a dedicated side event entitled "The GEO Biodiversity Observation Network (GEO BON): Enhancing Biodiversity Observations and Products for User Needs". The project’s key products were introduced by the project coordinator Christoph Häuser and the workpackage 2 leader Hannu Saarenmaa.

EU BON at the BACI Workshop "Remote sensing applications related to land use/change"

Wed, 25 Nov 2015 15:28:00 +0200

From 9 to 11 November in Vienna, Austria the EU H2020 project Detecting changes in essential ecosystem and biodiversity properties – towards a Biosphere Atmosphere Change Index: BACI has organised a special workshop titled "Remote sensing applications related to land use/change" with the aim to facilitate co-design and co-production of knowledge with regard to innovative applications of remote sensing products.

EU BON project partner Duccio Rocchini was among the invited lecturers at the event. His talk titled "Like in a Rubik’s cube: Recomposing Biodiversity Information by Remote Sensing Data" introduced some experience from EU BON.

The overarching objective of BACI is to tap into the unrealized potential of existing and scheduled space-borne Earth observation data streams to detect changes in ecosystem functioning and services that have repercussions for essential biodiversity variables, land use potentials, and land-atmosphere interactions.

10 years ASEAN Centre for Biodiversity

Tue, 24 Nov 2015 17:14:00 +0200

The ASEAN Centre for Biodiversity (ACB) marked its 10^th year with the theme, "ACB and ASEAN Member States: A Decade of Cooperation on Biodiversity Conservation." The celebration covered a number of activities on 2 October 2015 at the College of Forestry and Natural Resources, University of the Philippines, Los Banos, Philippines. These included the groundbreaking ceremony of the new ACB headquarters; Tree Growing Activity at the "Tree World"; awarding of the Zooming in on Biodiversity Photo Contest Winners; and "Nawa'y Muli Tayong Makauwi," a musical theatre show on biodiversity conservation.

The event provided ACB with an opportunity to promote the milestones of the Centre, and a venue for the ASEAN Member States, ACB and its partner organizations and countries to get together and further strengthen collaborations and reaffirm commitments to conserve the rich biodiversity of the ASEAN region.

Find more updates in the latest ASEAN Biodiversity Bulletin.

The DEST taxonomy training programme 2015-2016

Mon, 23 Nov 2015 09:44:00 +0200

The Distributed European School of Taxonomy (DEST), an initiative under the CETAF umbrella and managed by RBINS, has launched its training programme for 2015-2016.

Check out the Expert-in-training programme enabling trainees to develop and strengthen their taxonomic research skills through on-the-job-training and the Modern Taxonomy programme offering intensive theoretical courses in various subjects.

The Distributed European School of Taxonomy (DEST) was established within the framework of the EU funded project European Distributed Institute of Taxonomy (EDIT) and under the umbrella of the Consortium of European Taxonomic Facilities (CETAF). The EDIT consortium agreement lasted from March 2006 until March 2011. Since then, the Royal Belgian Institute of Natural Sciences (RBINS) remains responsible for the continued management of DEST, organization of courses and related logistical matters. The DEST currently includes a network of around 100 training providers from 60 institutions.

FishBase and SeaLifeBase updates are now online!

Fri, 20 Nov 2015 10:57:34 +0200

October 2015 updates for both FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org) are now online!

EU BON welcomes a new Associated Partner - MUSE (Museo delle Scienze)

Thu, 19 Nov 2015 16:06:00 +0200

We are happy to announce the latest member of our Associated Partners list - MUSE (Museo delle Scienze).

MUSE, or the Science Museum is an auxiliary body of the Autonomous Province of Trento. Its task is to interpret nature, starting from the mountains, using the eyes, tools, and applications of scientific research, taking advantage of the challenges of the contemporary world, stimulating scientific curiosity and the pleasure of knowledge, giving value to science, innovation, and sustainability.

We look forward to more institutions and projects joining our Associated Partners family.

The GEO BON bi-annual progress report is now available

Thu, 19 Nov 2015 13:49:00 +0200

The new GEO BON bi-annual report is now published. It provides an overview of the activities developed by our network over the last two years. It starts with a brief presentation of the GEO BON mission and structure.

It also presents the two core activities of GEO BON: the development of the Essential Biodiversity Variables framework and of the Bon-in-a-Box toolkit. The different national, regional and thematic biodiversity observation networks associated with GEO BON are presented. The report highlights the most important activities from each of the nine working groups of GEO BON, where experts around the world work around specific biodiversity monitoring topics.

For more information, download the report here.

Investing in European success – A Decade of Success in Earth Observation Research and Innovation

Thu, 19 Nov 2015 11:59:00 +0200

The European Commission has recently released publication focused on Earth Observation Research and EU BON is one of the successful projects featured in it.

The publication titled "Investing in European success – A Decade of Success in Earth Observation Research and Innovation" looks at the benefits that Earth Observation brings to studying and protecting the environment.

The Earth’s atmosphere, oceans and landscapes are changing rapidly, with human activities being a major driver. Monitoring and modelling these changes are critical because they allow governments, society and the private sector to make informed decisions about climate, energy, food security, natural hazards, health and other societal challenges. To be effective, these responses must be grounded in comprehensive and timely information. More importantly, decision makers, managers and experts must have access to the information they need, when they need it and in a format which can be easily utilised.

To address this challenge, the intergovernmental Group on Earth Observations (GEO) has provided a voluntary framework since 2005 where 98 governments, the European Commission and 87 international organisations develop new projects and coordinate their strategies and investments in the field of Earth observation. The vision of GEO is to realise a future wherein decisions and actions for the benefit of humankind are informed by coordinated, comprehensive and sustained Earth observations and information. GEO’s main objective is to develop and implement the Global Earth Observation System of Systems (GEOSS).

EU BON is an attempt to overcome these problems at European level and to contribute to the Group on Earth Observations’ (GEO) global initiative with the same aims – GEO BON.

Find the full publication here, EU BON can be found featured on pages 26 - 27.

Postdoctoral position: Modelling of the land-sea nutrient transfer to the Mediterranean sea under different land management scenarios

Mon, 09 Nov 2015 11:21:00 +0200

Post-doctoral scientist position is open for the project "Towards an integrated prediction of Land & Sea Responses to global change in the Mediterranean Basin" (LaSeR-Med), which focusses on integrated socio-ecological modelling. The duration of the contract is initially one year, with a possible extension for a second year, depending on the initial results. The post-doc will be based within the Mediterranean Institute of marine and terrestrial Biodiversity and Ecology (IMBE) in Aix-en-Provence, France. The project is part of the Labex OT-Med (http://www.otmed.fr/).

Applicants should hold a doctoral degree in physics, chemistry, microbiology, geosciences, environmental sciences or a related field of science. They should be familiar with modelling biogeochemical interactions between ecosystems and capable to further develop existing numerical ecosystem models. Programming skills (C) and modelling experience are therefore mandatory. Knowledge of R and of Unix/Linux environment will be an advantage. The candidate should have good written and oral communication skills. For work, good skills in the English language will be essential.

The project:

Terrestrial and marine ecosystems are connected through groundwater, river discharge and nutrient outflows (especially N and P). River catchments in the Mediterranean are N-intensive regions, mostly due to intensive agriculture in the North and to crop N2 fixation or food & feed import in the South. The fraction of nutrient reaching the sea constitutes significant anthropogenic forcing of many marine biological processes. For simulating the dynamics of the first levels of the marine food web (from nutrients to jellyfishes), the ocean biogeochemical model, Eco3M-MED, used and developed by the Mediterranean Institute of Oceanography (MIO) within OT-Med, currently uses N and P measurements at river mouths, e.g. for the Rhône.

In order to estimate the impacts of global change on the functioning of marine ecosystems, the project aims at modeling the dependency of N and P outflows to the Mediterreanean sea toward land management. Land management is modelled as part of the agro-ecosystem model LPJmL (Bondeau et al., 2007), that has been especially adapted to the Mediterranean cropping systems (Fader et al., 2015). Among others, LPJmL simulates the daily carbon and water cycles, and the river discharges to the sea. Following existing approaches in the scientific literature, the post-doc will implement the nutrient N and P transfer in LPJmL, covering the net nutrient inputs to the river catchments by accounting for the processes occurring at the agro-ecosystem level (N2 biological fixation, fertilization, atmospheric deposition) and the net food and feed imports. Since only a minor fraction of the net nutrient inputs from Mediterranean basins reaches the sea, the retention along the nutrient cascade will have to be added to the LPJmL river routing scheme, similarly to the method used by the Riverstrahler model. Once the nutrient transfers have been introduced into LPJmL, simulations will be validated using current climate and land use forcing for comparisons with the existing observations from river outlets. Finally, future conditions will be assessed by using the model with scenarios of changing regional climate and land use / land management.

Your application:

Applications should contain a suitable motivation letter describing your anticipated role in the project, a CV, a list of scientific publications and the names of at least two scientists that can be contacted for references. They must be sent to Ms. Gabriela Boéri (gabriela.boeri@imbe.fr). Please prepare your application as a single file in pdf-format.

Questions about the project or the position can be directed to Dr. Alberte Bondeau (alberte.bondeau@imbe.fr). The position will be filled as soon as a suitable candidate has been found – work should start soon after that date. The salary and contract conditions will be determined according to standards set by Aix-Marseille University – questions in this regard can be directed to Sophie Pekar (pekar@otmed.fr).

Monitoring farmland biodiversity across Europe: It could cost less than you think

Fri, 06 Nov 2015 18:15:00 +0200

How can we monitor Europe-wide farmland biodiversity so that it makes sense to farmers, is ecologically credible and scientifically sound and can be implemented for a reasonable price? Two new studies answer these questions.

First, stakeholders were asked, which indicators provided best "value for money" for their purpose. Habitat, plant species and farm management indicators ranked highest. Wild bees, earthworms and spiders as important providers of ecosystem services came next. Together they form a minimum set of indicators which provides non-redundant information and which can make dominant changes in farmland biodiversity visible.

Researchers from the FP7 funded EU projects "Biodiversity Indicators for European Farming Systems (BioBio)" and "Building the European Biodiversity Observation Network (EU BON)", then developed cost estimates for nine monitoring scenarios and the authors conclude that a continent-wide farmland biodiversity monitoring scheme would require only a modest share of the Common Agricultural Policy (CAP) budget (2014-2020).

Cost assessments showed that the farmland biodiversity monitoring scenarios require 0·01% - 0·74% of the total CAP budget and 0·04% - 2·48% of the CAP budget specifically allocated to environmental targets. With 30% of the CAP devoted to environmental targets (more than 120 billion EURO), investing in a monitoring process seems a logical choice given these results. The researchers provide a framework for individual countries to start farmland biodiversity monitoring, building towards a coherent European picture.

The studies were published in the Journal of Applied Ecology and the Journal of Environmental Management.

"Despite scientific proof that monitoring increases the (cost) efficiency of policy measures, monitoring rarely gets included in policy programme budgets. We identified that the cost are not as high as feared. To further facilitate implementation, the study provides stepping stones to build a European monitoring scheme, offering a choice in indicators and using regions as a unit of trend analysis," explains Dr. Ilse Geijzendorffer, the lead author of the Journal of Applied Ecology paper.

Original Source:

Geijzendorffer, I. R., Targetti, S., Schneider, M. K., Brus, D. J., Jeanneret, P., Jongman, R. H.G., Knotters, M., Viaggi, D., Angelova, S., Arndorfer, M., Bailey, D., Balázs, K., Báldi, A., Bogers, M. M. B., Bunce, R. G. H., Choisis, J.-P., Dennis, P., Eiter, S., Fjellstad, W., Friedel, J. K., Gomiero, T., Griffioen, A., Kainz, M., Kovács-Hostyánszki, A., Lüscher, G., Moreno, G., Nascimbene, J., Paoletti, M. G., Pointereau, P., Sarthou, J.-P., Siebrecht, N., Staritsky, I., Stoyanova, S., Wolfrum, S., Herzog, F. (2015), How much would it cost to monitor farmland biodiversity in Europe?.Journal of Applied Ecology. doi: 10.1111/1365-2664.12552

S. Targetti, F. Herzog, I.R. Geijzendorffer, P. Pointereau, D. Viaggi, Relating costs to the user value of farmland biodiversity measurements, Journal of Environmental Management, Volume 165, 1 January 2016, Pages 286-297, ISSN 0301-4797, http://dx.doi.org/10.1016/j.jenvman.2015.08.044.

1st GLOBAQUA International Conference: Deadline for abstracts extended

Sat, 31 Oct 2015 10:28:00 +0200

The 1st GLOBAQUA International Conference will be held on 11-12 January 2016 in Freising, Germany. The interdisciplinary conference will go under the motto "Managing The Effects Of Multiple Stressors On Aquatic Ecosystems Under Water Scarcity".

The conference will serve as a platform for exchange and discussion of innovative scientific findings and methods in aquatic ecosystems research. It will focus on novel methods of environmental monitoring and modeling of various scopes, scales and structural complexity to improve process understanding the interconnectivity and feedback mechanisms of climate (regional), land use (regional), economy, hydrology and hydraulics (catchment and river), water quality (river), biology and aquatic ecosystems (reach scale). Further, the conference builds the bridge to the scientific assessment of implications on policy and management.

The deadine for submitting an abstract for the conference has been now extended until 7 Nov 2015.

More information on the conference, registration, abstract submitting is available on the GLOBAQUA website.

Streamlined import of specimen & occurrence records into taxonomic manuscripts

Fri, 30 Oct 2015 10:55:00 +0200

Substantial amount of documented occurrence records is awaiting publication stored in repositories and data indexing platforms, such as the Global Biodiversity Information Facility (GBIF), Barcode of Life Data Systems (BOLD Systems), or Integrated Digitized Biocollections (iDigBio). In order to streamline the authoring process, save taxonomists time, and provide a workflow for peer-review and quality checks, Pensoft has introduced an innovative feature that makes it possible to easily import occurrence records into a taxonomic manuscript.

Prior to this development, Pensoft's ARPHA Writing Tool (AWT) only used the "upload from Excel" approach for this workflow. Although this method significantly simplified the process of importing materials and is actively used by the authors, it still required one extra transposition step.

Now, we added a new even more user-friendly option. By simply specifying an identifier (ID) in the relevant box, the new import plugin allows for occurrence data, stored at GBIF, BOLD systems, or iDigBio, to be be directly inserted into the manuscript. It all happens in the user-friendly environment of the AWT, where the imported data can be then edited before submission to the Biodiversity Data Journal.

Not having to retype or copy/paste species occurrence records, the authors save a lot of efforts. Moreover, they automatically import them in a structured Darwin Core format, which can be easily downloaded from the article text into structured data by anyone who needs the data for reuse after publication.

Another important aspect of the workflow is that it will serve as a platform for peer-review, publication and curation of raw data, that is of unpublished individual data records coming from collections or observations stored at GBIF, BOLD and iDigBio.

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.

Call for Applications (Traineeship): FishBase and Fish Taxonomy Training Session 2016

Mon, 26 Oct 2015 12:50:53 +0200

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa in the FishBase database. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five (5) grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training will have three subsets:

A detailed explanation of FishBase in all its aspects;
A training in the taxonomy of African fishes;
A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). For more information and to apply for this three-month training grant, see: http://fishbase.africamuseum.be or www.fishbaseforafrica.org. Please note that for 2016, this course will be given in French only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

Call to host the ecoSERVICES international project office

Wed, 21 Oct 2015 16:07:00 +0300

ecoSERVICES is seeking a new host institution to establish its international project office from 2016. Expressions of interest will be examined with the scientific steering committee on the week of 30 November 2015.

Currently hosted at the Institut Méditerranéen de Biodiversité et d’Ecologie (IMBE) in France, ecoSERVICES is seeking a new host for its international project office from 2016

The ideal host institution works on scientific issues related to biodiversity, ecosystem services and human well-being, at various scales from local or national to global; and meets a few practical specifications via direct funding or in-kind support for establishment of a fully operational office.

Expressions of interest need to be sent to Karine Payet-Lebourges by email with subject "ecoSERVICES IPO – Offer".

Applications will be examined with the scientific steering committee on the week of 30 November 2015.

More information here.

Manuscript at the click of a button: Streamlined conversion of metadata for GBIF and DataONE into scholarly manuscripts

Thu, 15 Oct 2015 11:19:00 +0300

Data collection and analysis are at the core of modern research, and often take months or even years during which researchers remain uncredited for their contribution. A new plugin to a workflow previously developed by the Global Biodiversity Information Facility (GBIF) and Pensoft, and tested with datasets shared through GBIF and DataONE, now makes it possible to convert metadata into a manuscript for scholarly publications, with a click of a button.

Pensoft has currently implemented the feature for biodiversity, ecological and environmental data. Such records are either published through GBIF or deposited at DataONE, from where the associated metadata can be converted directly into data paper manuscripts within the ARPHA Writing Tool, where the authors may edit and finalize it in collaboration with co-authors and peers and submit it to the Biodiversity Data Journal (BDJ) with another click. Until now, the GBIF metadata have been exported into an RTF file. The new feature will be also part of future Pensoft projects, including the recently announced Research Ideas & Outcomes (RIO) Journaland the forthcoming Ecology and Sustainability Data Journal.

Metadata can be directly downloaded from the repository site (example with ONEMercury from DataONE) and then imported via the ARPHA Writing tool; Credit: ONEMercury, a tool by DataONE

The concept of the data paper was introduced in the early 2000's by the Ecological Society of America in order to solve issues of handling big data and to make the metadata and the corresponding datasets discoverable and citable. It was then brought to the attention of the biodiversity community in 2011 as a result of a joint GBIF and Pensoft project and later implemented in the routine publishing process in all Pensoft journals.

Since then, Pensoft has been working with GBIF, and subsequently DataONE to automate the process of converting metadata into a human-readable data paper format. The novel workflow means that with only a couple of clicks, publishers of datasets on either GBIF, DataONE or any other portal storing metadata in the same format, may submit a manuscript for peer-review and open access citable publication in BDJ.

The process is simple, yet it brings a lot of benefits. Publishing data does not only mean a citable publication and, thus, credit to the authors and the repository itself, but it also provides the option to improve your work and collect opinion though peer-review. BDJ also shortens the distance between "narrative (text)" and "data" publishing.

"Metadata descriptions (e.g., data about the data) are of primary importance for data dissemination, sharing and re-use, as they give essential information on content, scope, purpose, fitness for use, authorship, usage rights, etc. to any potential user. Authoring detailed metadata in repositories can seem a tedious process, however DataONE users will now benefit from direct export of already created metadata into data paper manuscripts and have even better exposure of their work through discoverability mechanisms and scholarly citations," commented Dr Amber Budden, DataONE Director for Community Engagement and Outreach

"It is great to reap the fruits of a process that started back in 2010. The automated streamlining of biodiversity data between repositories and publisher is an elegant feature that makes publishing a data paper an easy and rewarding process to crown scientists data collection efforts and ensure its use and re-use," added Prof. Lyubomir Penev, Managing Director of Pensoft.

More detailed information on how data authors could use the workflow can be found on the Pensoft blog.

References:

Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics. 12(Suppl 15):S2. DOI: 10.1186/1471-2105-12-S15-S2

Pan-European Species-directories Infrastructure: Basis for handling big taxonomic data

Wed, 30 Sep 2015 18:39:00 +0300

Looked down on with scepticism by many taxonomists, handling big data efficiently is a huge challenge that can only be met with thorough and multi-layered efforts from both scientists and technological developers. Projects like the Pan-European Species-directories Infrastructure (PESI), started in 2009, prove that harmonised taxonomic reference systems and high-quality data sets are possible through dynamic, expertly created and managed online tools. The methods, results and future prospects of PESI are available in the open access Biodiversity Data Journal.

With environmental changes occurring at an unprecedented rate around the world, biological communication needs to be left off the pace at no point. Phenomena such as species' migration, extinction, intrusion; ecosystem stability; decline of pollinators and pest invasion have to be monitored closely and identified momentarily. In order to do so, proper identification based on reliable and easily accessible data is crucial.

Therefore, the three key objectives of PESI include standardisation in taxonomic reference systems, enhancement of the quality and completeness of taxonomic data sets and creation of integrated access to taxonomic information. The five pillars of biological community networks, Zoology, Botany, Marine Biota, Mycology and Phycology, have been integrated in five infrastructural components: knowledge, consensus, standards, data and dissemination.

As a result, PESI did not only merge data from a range of sources and published a total of nearly 450,000 scientific names online. It also maintains networks of outstanding experts and national focal points, so that it makes sure that the taxonomic information, it relies on, is always at its finest, while simultaneously takes care about delivering persistent standards and easily accessible up-to-date biodiversity data.

PESI results will also feed as an essential part for the advancement of relevant EU projects, such as Building the European Biodiversity Observation Network (EU BON). In the EU BON project, the PESI Backbone will be advanced to satisfy the needs of the GEO BON / GEOSS system, also serving as a taxonomic backbone for the projected EU BON Biodiversity Portal.

Aiming at standardisation and integration of taxonomic data across platforms PESI also works in close collaboration with other relevant projects including GBIF, LifeWatch, the Catalogue of Life, the Encyclopedia of Life, the Global Names Architecture, GÉANT, ViBRANT, OpenUp!,BioVeL, iMarine , EU BON and BiodiversityKnowledge .

"Scientific names are key carriers of biodiversity information. Therefore, for the efficient exploring and integration of biodiversity data, the development of a functional taxonomic resolution system, including the establishment of a shared taxonomic standard (as a core component), is essential for all sorts of biodiversity assessments. PESI provides such an infrastructure for Europe, integrating the relevant technical (informatics) and social (knowledge & users) networks into a common work program, serving a wide community of biodiversity workers," says Dr. Yde de Jong, coordinator of the Pan-European Species-directories Infrastructure (PESI) project.

"The PESI Taxonomic Backbone serves as a taxonomic data standard resource, facilitating and optimising the integration and sharing of European biodiversity data, supporting a wide range of European services, major biodiversity programs and stakeholders on nature conservation and biodiversity management," conclude their results the scientists.

Original Source:

de Jong Y, et al. (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848.doi: 10.3897/BDJ.3.e5848

Additional Information:

The Pan-European Species-directories Infrastructure (PESI) provides standardised and authoritative taxonomic information by integrating and securing Europe's taxonomically authoritative species name registers and nomenclators (name databases) and associated expert(ise) networks that underpin the management of biodiversity in Europe. PESI kicked-off as an EC-FP7 project, running from 2009 to 2011.

PESI proceeded from the EC-FP6 Networks of Excellence EDIT, on developing a European Distributed Institute of Taxonomy, and MarBEF, on Marine Biodiversity and Ecosystem Functioning.

Building the European Biodiversity Observation Network (EU BON) is a European research project, financed by the 7th EU framework programme for research and development (FP7). EU BON seeks ways to better integrate biodiversity information and implement into policy and decision-making of biodiversity monitoring and management in the EU.

Connecting the dots: Integrated biodiversity data could be the key to a sustainable future

Thu, 24 Sep 2015 17:43:00 +0300

Biodiversity Observation Networks (BONs) have recently become a hot topic on the scene of natural sciences. But what is their role in advancing our knowledge of biodiversity and associated ecosystem services?

A new paper in the Biodiversity journal uses the European Biodiversity Observation Network (EU BON) as an example, to explain how they can fill in gaps and address existing barriers in knowledge through implementing an integrated biodiversity information framework.

Biodiversity supports essential ecosystem services that are key to human well-being. The ongoing global biodiversity decline is a threat to humans, particularly in developing countries.

The Aichi biodiversity targets of the United Nations' Strategic Plan for Biodiversity set ambitious goals for protecting biodiversity from further decline, but gaps in knowledge still sit in the way of monitoring progress, hindering the assessment of the current status and future trends of biodiversity.

There is an urgent need for a paradigm shift with regards to how biodiversity data are collected, stored, shared and streamlined in order to tackle many sustainable development challenges ahead.

Solving issues of biodiversity knowledge gaps and data reuse are a main focus of the EU BON project and provide a European contribution to GEO (Group on Earth Observations) and the wider Global Earth Observation System of Systems (GEOSS).

The EU BON project aims at addressing the need for a shift towards an integrative biodiversity information framework, starting from collection to the final interpretation and packaging of data.

At the centre of the EU BON's efforts is promoting and adopting existing standards of good practice and integrating data within a single biodiversity portal in order to make it discoverable, accessible and digestible. The aim of the portal is to collect and standardize existing data sources, as well as to work towards translating and visualizing the collected raw data to show trends and prognoses useful to policy and society.

"Biodiversity data, information and knowledge are diverse, dispersed and disparate. It is hard for a non-specialist to make sense of raw data and often separate data sets and gaps in data prevent effective policy reporting. This is why progress towards the Aichi targets is often hard to calculate, and where BONs can play a central role by working towards standardization to achieve true interoperability of data sets." explains the lead author Dr. Florian T. Wetzel,Museum für Naturkunde (MfN), Berlin.

"For advancing with the biodiversity challenge and the Aichi Targets globally, regional BONs are needed, and this is where EU BON attempts to make a difference for Europe" adds Dr. Christoph L. Häuser, EU BON coordinator and Deputy Director General at MfN, Berlin.

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Original Source:

Florian T. Wetzel, Hannu Saarenmaa, Eugenie Regan, Corinne S. Martin, Patricia Mergen, Larissa Smirnova, Éamonn Ó Tuama, Francisco A. García Camacho, Anke Hoffmann, Katrin Vohland & Christoph L. Häuser (2015): The roles and contributions of Biodiversity Observation Networks (BONs) in better tracking progress to 2020 biodiversity targets: a European case study, Biodiversity, DOI: 10.1080/14888386.2015.1075902

A TEDx Trento talk on Extreme Biodiversity

Thu, 24 Sep 2015 17:26:00 +0300

What are the threats for biodiversity from global to local spatial scales? How might human beings succeed in fighting biodiversity loss?

EU BON partners, Annapaola Rizzoli and Duccio Rocchini give a TEDx talk on extreme biodiversity in space and time at 2200 metres in the Pale di San Martino on September 6, organized by TEDxTrento (soon will be also available with English subtitles).

Learn more here.

ESA Living Planet Symposium 2016: Abstract Submission is Open

Thu, 24 Sep 2015 16:55:00 +0300

The 2016 European Space Agency Living Planet Symposiumwill be held in Prague, Czech Republic from 9-13 May 2016 and is organised with the support of the Ministry of Transport, Ministry of Environment and Ministry of Education, Youth and Sports of the Czech Republic. The event follows previous successful symposia held in Edinburgh (2013), Bergen (2010), Montreux (2007) and Salzburg (2004).

The first announcement has been now released, with a deadline for abstract submission on 16 October 2015.

All received abstracts will be reviewed by a Scientific Committee, notification of acceptance will be provided in early February 2016. Registration to attend the event (free of charge) will be opened in February 2016, after the publication of the preliminary programme.

The objectives of the ESA Living Planet Symposium are to:

Present the progress and plans for the implementation of ESA Earth Observation strategy and the relevance of ESA's EO Programme to societal challenges, science and economy.
Provide an international forum to scientists, researchers and users to present and share state of the art results based on ESA's Earth Observation and third-party mission data.
Review the development of Earth Observation applications.
Present the Copernicus space component and operational services.
Report on ESA’s Exploitation Programmes (i.e. Climate Change Initiative, SEOM, DUE, VAE, STSE).
Introduce the current and future planned Earth Observation missions.
Outline ESA’s international cooperation in the field of Earth Observation.
Provide dedicated thematic tutorials and demonstrations.

For more information, please visit: http://lps16.esa.int

New EU BON Policy Brief on Open Data

Thu, 24 Sep 2015 12:26:00 +0300

The fifth EU BON Policy brief focuses on the need for open data in biodiversity monitoring. The Group on Earth Observation’s Biodiversity Observation Network, of which EU BON is a part, has a vision to better monitor and manage the global biosphere for our common good. This creates research challenges that require use of all appropriate data. Yet, access to data is impaired because, traditionally, few data are released, they are often locked up in traditional scientific literature, or because of concerns over intellectual property rights.

Because of this, EU BON endorses the free and open exchange of data and knowledge in accordance with the "Joint Declaration on Open Science for the 21st Century", especially in regard to scientific information produced in Europe as outlined by the European Commission.

Find out more in the Policy Brief below:

Strengthening cooperation on Earth observation and the environment

Tue, 15 Sep 2015 11:18:00 +0300

The European Environment Agency (EEA) and the European Space Agency (ESA) signed a Memorandum of Understanding, which sets out common objectives and areas of cooperation in the field of Earth observation and the environment over the coming years, announces a news item published on the EEA website.

Satellite data, such as that provided by the ESA, is a key component of environmental knowledge. The broader view satellite measurements offer of a particular subject at a particular time have improved environmental monitoring, leading to more evidence based policy and, ultimately, better environmental management.

The Memorandum of Understanding sets objectives for the exchange of scientific expertise and technical information between the agencies, providing the basis for mutual access to data and the promotion of joint activities.

Read more in the original news item here.

Nature commentary: Agree on biodiversity metrics to track from space

Mon, 31 Aug 2015 15:56:00 +0300

A new commentary "Environmental science: Agree on biodiversity metrics to track from space" published in Nature looks at why conservation and space agencies should agree on a definitive set of biodiversity variables and ways in which these will be tracked from space, to address conservation targets. The paper is a result of two Group on Earth Observations Biodiversity Observation Network (GEO BON) workshops which took place earlier this year.

Global biodiversity loss is intensifying. But it is hard to assess progress towards the Aichi Biodiversity Targets for 2011–20 set by the Convention on Biological Diversity (CBD). Target 5, for instance, aims to halve global deforestation rates by 2020; but reliable indicators for deforestation that can be monitored remotely have not been developed or agreed on. National biodiversity monitoring programmes differ widely, most data sets are inconsistent, and few data are shared openly.

Read more on the topic in the original commentary article.

EU BON featured as a success story: Combining citizen and satellite biodiversity data

Wed, 19 Aug 2015 16:17:00 +0300

We are happy to announce that earlier this summer EU BON has been selected to be featured as a successful EU-funded project. The DG Research & Innovation communication team has interviewed our project co-ordinator Christoph Häuser and the resulting article - Combining citizen and satellite biodiversity data - is now a fact!

The news item focuses on EU BON's efforts to bring together biodiversity and Earth observation data, that are accumulated from data sources ranging from the individual citizen scientist, researchers to the most technologically advanced satellites in one EU-wide initiative.

"Information on life on Earth is crucial to addressing global and local challenges, from environmental pressures and societal needs, to ecology and biodiversity research questions," commented Christoph Häuser in his interview.

View the full story on the Horizon 2020 site.

EU BON Workshop in Manaus, Brazil

Mon, 17 Aug 2015 13:45:00 +0300

An EU BON workshop took place on 20-23 July in Manaus, Brasil for a targeted group of representatives of the different EU BON WPs or task forces. The workshop was attended by European representatives of EU BON and INPA to discuss potential options to further the integration between European teams and the Brazilian team.

Among topics discussed at the workshop were issues of designing and running biodiversity monitoring observatories (i.e. optimization and guidelines for planning biodiversity monitoring); analyses of biodiversity data to be addressed for assessing changes and patterns; and linkage of (meta-) data to EU BON portal.

Images from the workshop; Credit: William Magnusson (INPA) & Israel Peer (GlueCAD)

Being hosted in Manaus, this workshop also looked into facilitationg the integration of Brazilian and European expertise, for instance by updating about the progress made by Brazil in starting participatory resource monitoring in Brazilian National parks and the development of databases to integrate this information.

Besides presentation and discussions, INPA organized an excursion to show their log-term biodiversity monitoring field sites (RAPELD) and to explain the rationale and methodology behind their design and organization.

Images from the excursion; Credit: Charlie Marsh

Article Alert: Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)

Fri, 07 Aug 2015 16:59:00 +0300

One of our recent associated partners, the EU project GLOBIS-B has published its first paper: "Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)". You can find the article here.

Abstract:

Essential biodiversity variables (EBVs) have been proposed by the Group on Earth Observations Biodiversity Observation Network (GEO BON) to identify a minimum set of essential measurements that are required for studying, monitoring and reporting biodiversity and ecosystem change. Despite the initial conceptualisation, however, the practical implementation of EBVs remains challenging. There is much discussion about the concept and implementation of EBVs: which variables are meaningful; which data are needed and available; at which spatial, temporal and topical scales can EBVs be calculated; and how sensitive are EBVs to variations in underlying data? To advance scientific progress in implementing EBVs we propose that both scientists and research infrastructure operators need to cooperate globally to serve and process the essential large datasets for calculating EBVs. We introduce GLOBIS-B (GLOBal Infrastructures for Supporting Biodiversity research), a global cooperation funded by the Horizon 2020 research and innovation framework programme of the European Commission. The main aim of GLOBIS-B is to bring together biodiversity scientists, global research infrastructure operators and legal interoperability experts to identify the research needs and infrastructure services underpinning the concept of EBVs. The project will facilitate the multi-lateral cooperation of biodiversity research infrastructures worldwide and identify the required primary data, analysis tools, methodologies and legal and technical bottlenecks to develop an agenda for research and infrastructure development to compute EBVs. This requires development of standards, protocols and workflows that are ‘self-documenting’ and openly shared to allow the discovery and analysis of data across large spatial extents and different temporal resolutions. The interoperability of existing biodiversity research infrastructures will be crucial for integrating the necessary biodiversity data to calculate EBVs, and to advance our ability to assess progress towards the Aichi targets for 2020 of the Convention on Biological Diversity (CBD).

Original Source:

W. Daniel Kissling et. al. (2015) Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs). Biodiversity. DOI: 10.1080/14888386.2015.1068709

Data Management in Citizen Science Projects: share your experience!

Fri, 31 Jul 2015 17:45:00 +0300

It has been recognized that issues regarding the sustainability and interoperability of data collected by citizens hinder the re-usability and integration of these data across borders. The European Commission’s Joint Research Centre (JRC), is following up on these findings with a detailed study of interoperability arrangements, hosting and data management practices of Citizen Science projects. These activities include a survey designed to capture the state of play with regard to data management practices on the local, national and continental scales. The questions are especially inspired by the recently proposed data management principles of the Group on Earth Observations and those of the Belmont Forum.

Beyond the pure stocktaking and awareness raising, the results should establish a base line for prioritizing follow-up activities and measuring progress. The results will also inform the discussion on the potential roles of the European Commission – and especially the JRC – in Citizen Science.

After discussions with members of the European Citizen Science Association (ECSA) and the international Citizen Science Association (CSA), it was decided to open the scope of the questionnaire to the international community, so that non-EU and globally acting organizations could also benefit from the outcomes.

The survey will be open until 31 August 2015, and the results of the subsequent analysis will be available by the end of September. We invite all those involved in Citizen Science projects to take the survey in order to provide us with invaluable information and insight into Citizen Science projects and best practice.

Take the Survey! >> https://ec.europa.eu/eusurvey/runner/CSDataManagement

EU 2010 biodiversity baseline — adapted to the MAES typology (2015)

Tue, 28 Jul 2015 10:26:00 +0300

The report ‘EU 2010 biodiversity baseline - adapted to the MAES typology (2015)’ presents a revised overview of the EEA's EU 2010 biodiversity baseline report.

The revision is necessary because the typology of ecosystems used in the 2010 report has since been altered by a working group of biodiversity experts. The revised report provides recalculated information on the state and trends of the different biodiversity and ecosystem components, based on the new typology of ecosystems.

Find the report here.

New Paper: Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets.

Tue, 21 Jul 2015 10:51:00 +0300

A new EU BON derived open access paper looking into Earth Observations (EO) and the Aichi Targets was recently published in the journal Remote Sensing in Ecology and Conservation.

The paper reviews the ABTs and EBVs against direct and indirect, operational and emerging, EO data products. The review was conducted by consulting expert opinion and categorically rating the Targets based on the adequacy of currently available EO technology to build indicators per target. The potential RS-EBVs were also matched with their respective EO data products.

To summarize this information a monitoring framework is proposed where RS-EBVs are used to harmonize observations prior to the indicator stage. Potential obstacles to implementing this framework and challenges to its adoption by the wider science and policy community are discussed. Finally, upcoming satellite missions which could offer potential for assessing global biodiversity status and trends beyond the 2020 timeframe of the CBD's current Strategic Plan for Biodiversity are discussed.

Original Source:

O'Connor B. et. al. (2015) Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets. Remote Sensing in Ecology and Conservation. DOI: 10.1002/rse2.4

Job offer: Population Biologist / Conservation Biologist (Postdoc) (m/f)

Fri, 17 Jul 2015 11:18:00 +0300

The Department of Conservation Biology at the Helmholtz Centre for Environmental Research (UFZ) is offering a full-time position for a Population Biologist / Conservation Biologist (Postdoc) focussing on assessing past and future trends in species under land use and climate change and improving the design of monitoring schemes. The position will be part of EU BON.

The Helmholtz Centre for Environmental Research (UFZ) with its 1,100 employees has gained an excellent reputation as an international competence centre for environmental sciences. We are part of the largest scientific organisation in Germany, the Helmholtz association. Our mission: Our research seeks to find a balance between social development and the long-term protection of our natural resources.

More information on the oficial job offer page: http://bit.ly/1MexC6Q

2016 GEO BON Open Science Conference: Biodiversity and ecosystem Services Monitoring for the 2020 Targets and beyond. Building on observations for user needs

Wed, 15 Jul 2015 09:58:00 +0300

The 2016 GEO BON Open Science Conference: "Biodiversity and ecosystem Services Monitoring for the 2020 Targets and beyond. Building on observations for user needs" will take place from 4 to 9 July 2016 in Leipzig, Germany.

Biodiversity Science is facing enormous challenges as the pressures upon the earth’s biotic systems are rapidly intensifying and we are unlikely to reach the CBD 2020 Aichi Targets. But how far or close are we to reach the targets? The GEO BON Open Science Conference on "Biodiversity and Ecosystem Services Monitoring for the 2020 Targets and beyond" will assess this question. The conference is open to the wide scientific public and is sponsored and co-organized by iDiv, UFZ, SASCAL (others to come).

For more information please visit: http://conf2016.geobon.org

Future Directions for Scientific Advice in Europe - a book

Wed, 01 Jul 2015 13:17:00 +0300

Future Directions for Scientific Advice in Europe was published in April 2015 and updated in June 2015 to take account of developments in the European Commission, focuses on scientific advice in Europe.

In May 2014, the Centre for Science and Policy (CSaP) and the European Commission co-hosted a Brussels workshop on ‘New technologies and better evidence for EU policymaking’. One of its conclusions was the need to better connect the latest theory, policy and practice in this field. Building on an 2013 essay collection on Future Directions for Scientific Advice in Whitehall, a similar collection exploring the future of scientific advice at the European level was created.

A free digital copy of and more information on Future Directions for Scientific Advice in Europe can be found here.

Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing

Tue, 23 Jun 2015 10:58:00 +0300

A new EU BON acknowledging special issue "Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing" published in the open access journal Remote Sensing provides a collection of important researchers in the field, as well as the most challenging aspects of the application of remote sensing to study ecosystems.

The special issue represents a stimulating discussion concerning innovative techniques/approaches that are based on remote sensing data, which are used for the study of ecosystems at different spatial and temporal scales. Research scientists and other subject matter experts submitted innovative and challenging papers that showed advances in several topics:

- estimating the spatial distribution of plant species richness by Light Detection and Ranging (LiDAR) and hyperspectral

data,

- assessing habitat quality of forest corridor based on NDVI,

- applying remote sensing to study (marine) coral ecosystems,

- identifying ecosystem functional types,

- distinguishing between different forest trunk size classes from remote sensing,

- detecting changes in forest patterns,

- applying light use efficiency models to estimate vegetation productivity,

- classifying grassland successional stages by airborne hyperspectral images

- proposing monitoring programs of grasslands based on multi-temporal optical and radar satellite images,

- estimating the potential of remote sensing to capture field-based plants phenology.

Original Source:

Rocchini, D. (2015). Earth observation for ecosystems monitoring in space and time: a special issue in Remote Sensing. Remote Sensing, 7: 8102-8106. [IF: 3.180] [DOI | PDF]

The full collection of papers can be found here:
http://www.mdpi.com/journal/remotesensing/special_issues/ecosystemsmonitoring

BESAFE/BIOMOT Conference: Motivations and arguments to act for biodiversity

Tue, 23 Jun 2015 10:47:00 +0300

The joint BESAFE/BIOMOT Conference "Motivations and arguments to act for biodiversity" took place on 10 & 11 June 2015 in Brussels, Les Ateliers des Tanneurs. The main objective of the conference was to present alternative ways to inspire innovative policy making to act for nature.

Based on four years of large-scale research by the two European projects, the conference aimed to define what could really work to motivate society to act for nature. The conference involved a wide audience in high-level keynotes, science-policy interface sessions, stakeholder meetings and panels.

The joint event was also a platform for the BESAFE project Final Conference where the beta version of the BESAFE tool was presented and tested. The tool is planned as a user-friendly application where stakeholders can browse project results and background information to help them to help them to improve biodiversity argumentation.

EU BON presented in a special biodiversity and ecosystems session during the 9th GEO European Projects Workshop

Fri, 19 Jun 2015 15:00:00 +0300

The 9th GEO European Projects Workshop took place on 15 and 16 June 2015, in Copenhagen, Denmark. A special session dedicated to biodiversity and ecosystems was held as a part of the meeting, where EU BON and other topic relevant projects were presented.

The session was started by Gary Geller with an introduction and overview. Particularly the importance of the long-term sustainability of the projects and the linkages to the overall aims of GEO were stressed, as well as the opportunity of the session to find further synergies among the GEO-related projects.

Participants at the biodiversity and ecosystems sessions during the 9th GEO European Projects Workshop; Credit: Florian Wetzel

EU BON was presented at the meeting by the project coordinator Christoph Häuser, who outlined the core elements for an integrated biodiversity information system. There is the challenge to provide a sound framework to overcome the fragmentation of available biodiversity information to obtain better information for political decision making. EU BON with its 31 partners tackles this challenge and its main objective is to serve as a European contribution to GEO BON.

Other projects presented during the session were EU H2020 projects ECOPOTENTIAL and GLOBIS‑B, both already in the list of associated partners of EU BON. The third H2020 project presented here was SWOS, a Satellite-based Wetland Observation Service.

One of the major outcomes of the session was the agreement that further follow-ups of the discussions are needed and that the projects should have further exchange among each other.

European Environmental Agency (EEA) Annual Report 2014

Wed, 17 Jun 2015 17:16:00 +0300

The European Environmental Agency (EEA) has published its Annual Report describing the work carried out by the EEA in 2014. The EEA annual report includes the EMAS environmental statement 2014.

The EEA aims to support sustainable development and to help achieve significant and measurable improvement in Europe's environment through the provision of timely, targeted, relevant and reliable information to policymaking agents and the public.

Download the report here.

GEO/Ramsar free webinar: Wetlands, Biodiversity and the Role of Earth Observations

Wed, 17 Jun 2015 15:09:00 +0300

A free GEO/Ramsar webinar titled "Wetlands, Biodiversity and the Role of Earth Observations" is taking place today - 18 June 2015. The webinar is designed for anyone with an interest in or passion for biodiversity and wetlands - students, scientists, experts, or anyone with a general interest in one or more of these topics – who wants to learn from these vast global communities.

This is the first of a series of planned webinars on the role of Earth observations in monitoring and sustaining biodiversity and wetlands. The webinars will be hosted by the GEO Biodiversity Observation Network (GEO BON) and GEO Water Community, together with the Ramsar Secretariat and will include leading experts from the global communities highly engaged in biodiversity, wetlands and Earth observations.

To watch the event and register follow the link: https://blbgroup.leadpages.net/webinar-wetlands/

Three new Associated Partners join the EU BON family

Wed, 17 Jun 2015 14:33:00 +0300

Our family of Associated Partners has grown with three new members that joined us this month. EU BON has signed MoUs with the GLOBal Infrastructures for Supporting Biodiversity research (GLOBIS-B), the Institute of Geosciences and Earth Resources of the National Research Council of Italy (IGG-CNR) and ECOPOTENTIAL: Improving Future Ecosystem Benefits through Earth Observations, The hand over took place during the 9th GEO European Projects' Workshop in Copenhagen (15 – 16 June 2015).

Left: EU BON coordinator Christoph Hauser and Anke Hoffmann handing over the MoUs to our partners from IGG-CNR and ECOPOTENIAL Antonello Provenzale, Carl Beierkuhnlein and Palma Blonda; Right: Handing over the MoU to Daniel Kissling - scientfic coordinator of GLOBIS-B; Credits: Anke Hoffmann

The GLOBIS-B project is a new H2020 project aiming to bring together biodiversity scientists with research infrastructure operators and legal interoperability experts to address the research needs and infrastructure services required to calculate Essential Biodiversity Variables (EBV) at a global scale.

ECOPOTENTIAL makes significant progress beyond the state-of-the-art and creates a unified framework for ecosystem studies and management of protected areas (PA). ECOPOTENTIAL focuses on internationally recognized PAs in Europe and beyond in a wide range of biogeographic regions, and it includes UNESCO, Natura2000 and LTER sites and Large Marine Ecosystems. Best use of Earth Observation (EO) and monitoring data is enabled by new EO open-access ecosystem data services (ECOPERNICUS).

IGG-CNR conducts studies based on mineralogy, petrology, geochemistry, geodynamics and geophysics, aimed at understanding the processes occurring both in the interior and at the surface of the Earth, and providing the fundamental knowledge for the applications (technological use of geomaterials, mitigation of the natural risks and correct management of the Earth resources for a sustainable development).

9th GEO European Projects Workshop is on & streamlined live

Mon, 15 Jun 2015 15:30:00 +0300

The 9th GEO European Projects Workshop is now taking place on 15 and 16 June 2015 in Copenhagen, co-organised by the Danish Meteorological Institute, the European Commission and the European Environment Agency.

While registration is now closed, due to demand the event will be recorded and streamed live on http://stream.dvc.dk/9thgeo/ for those who are interested to follow.

The objective of the GEO European Projects Workshop is to bring together European players interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS). The aim is to enable participants to present their work and discuss how Europe can contribute to this international effort. Its timing has been set to maximise early insight and awareness of the new Implementation plan for the next decade of GEO as well as input to and awareness of Horizon 2020 work programme for 2016 and 2017.

Building on the experience from previous GEO European Projects Workshops, it is intended to continue working towards greater involvement of the European private sector, especially SMEs, in GEO. The workshop will also focus on user engagement, and the priorities for future flagship initiatives, foreseen to be strengthened in the next phase of GEO, in order to fulfil GEO's ambition to provide information for decision making.

More information available on the official event page: http://geo.pbe.eionet.europa.eu/

Monitoring Nature: Research Developments

Mon, 15 Jun 2015 13:46:00 +0300

A new issue in Science for Environment Policy "Monitoring Nature: Research Developments" provides a flavour of recent work by scientists in the area of biodiversity monitoring to highlight both up-to-date approaches to conservation and evaluation, and how long-term monitoring data could be used more effectively in management and policy decisions.

This Issue also includes topics such as monitoring to environmental policy, remote sensing, citizen science, DNA barcoding and more.

Find this issue on the SEP website here, or go straight to download.

EU BON General Meeting 2015: working toward building the European Biodiversity Observation Network

Wed, 10 Jun 2015 18:35:00 +0300

The annual EU BON General Meeting was successfully held from 1 to 4 June 2015 at the Clare College Conferencing, Cambridge, United Kingdom.

The meeting was attended by a total of 85 participants with various organizational background and relation to EU BON. Among these were almost all EU BON alongside representatives of eight associate partners and many guests.

Participants at the EU BON General Meeting, 2015; Credit: Dirk Schmeller

One of the highlights of the meeting was its very start with three inspiring keynote speakers.

Among these, Bill Sutherland from the University of Cambridge started off to give an interesting speech about the progress and future plans on combining Biodiversity science and policy. Second was Gary Geller from the GEO secretariat who talked about GEO, GEOSS and GEO BON, its vision and goals.
Later on, Johannes Peterseil from LTER-Europe shared some interesting thoughts about linking ecosystem research and earth observation through the cooperation between LTER-Europe and EU BON.

During the meeting other relevant projects were also introduced to all participants. These were DataOne and Species 2000/Catalogue of Life and two new EU projects Ecopotential and Globis-B.

The General Meeting included six thematic sessions on highly relevant EU BON topics, followed by many cross-task modules which led to better cooperation and communication between work packages and tasks. The exchange of experience gave new input to all work packages and set the milestones for the work ahead.

Presentations from the meeting will be uploaded shortly.

PRESENTATIONS:

AGENDA - EU BON 3rd General Assembly

Keynote speakers:

W.Sutherland - Biodiversity science and policy

G.Geller - GEO / GEOSS / GEOBON

J.Peterseil - Linking ecosystem research and earth observation

Other projects:

B.Wilson - DataONE

C.Flann - Species 2000 Catalogue of Life

C.Marangi - Ecopotential

W.Los - Globis-B

EU BON presentations:

C.Haeuser - EU BON core elements for an integrated biodiversity information system

U.Koljalg - Data mobilization strategy and show case

H.Saarenmaa - European biodiversity portal

Y.Gavish - Developing EU BON's site-specific portal

E.Regan - Stakeholder requirements

I.Geijzendorffer - Context of EU BON

Selection of pictures from the meeting:

Green Week: stakeholders put nature in the spotlight

Thu, 04 Jun 2015 10:38:00 +0300

Stakeholders from across Europe are coming together at Green Week to discuss biodiversity and ecosystem services in Europe. The European Environment Agency (EEA) will present its latest findings, recently published in its reports 'State of nature in the EU' and 'The European Environment – state and outlook 2015'.

The European Environment Agency's recent assessments, including The European environment – state and outlook 2015 and State of Nature in the EU, show that Europe's biodiversity is still being eroded, despite significant local improvements. To halt the loss of biodiversity, stabilise and restore degraded ecosystems, the European Union has adopted the EU Biodiversity Strategy to 2020, which sets various targets and actions. An effective implementation of the strategy depends, among others, on the data and information available on biodiversity in Europe. Through its extensive network and close collaboration with partners, the EEA contributes extensively to the knowledge base on Europe's biodiversity.

Read the full original news story on the EEA website.

Climate Change & Biodiversity: What may happen to bony fishes in the North Sea?

Tue, 02 Jun 2015 14:44:00 +0300

Sustainable governance of our biological resources demands reliable scientific knowledge to be accessible and applicable to the needs of society. To achieve this, the EU BON project aims to develop a European Biodiversity Observation Network that facilitates open access to biodiversity data of relevance to environmental policy, and to develop innovative platforms for sharing and conveying this information through visually effective and policy-relevant media.

As part of this endeavour, EU BON partners FishBase Information and Research Group (FIN), the Museum für Naturkunde Berlin (MfN), and the UNEP World Conservation Monitoring Centre collaborated to produce an infographic titled ‘Climate Change & Biodiversity: What may happen to bony fishes in the North Sea?’. This infographic explains the economic and ecological importance of bony fishes in the context of the North Sea. It also visualises potential changes to species diversity and composition over time, using habitat suitability and climate change predictions. These changes have been projected to 2100 based on modelled environmental conditions under the Intergovernmental Panel on Climate Change’s A2 emissions scenarios. The projections have direct policy relevance to Aichi Biodiversity Target 10 of the Convention on Biological Diversity, which seeks to understand trends in climatic impacts on community composition in ecosystems, and to thereby minimize these impacts.

The infographic was published on the 1^st June 2015 on page 26 of The Parliament Magazine’s ‘Green Week’ edition (Issue 413), which is distributed to all members of European Parliament, the European Commission, Presidency Office, Party political groups, and various other EU institutions, with over 50,000 readers worldwide.

Conservation Biology Special Section: "Conservation in Europe as a model for emerging conservation issues globally

Mon, 01 Jun 2015 15:06:00 +0300

A Special Section: "Conservation in Europe as a model for emerging conservation issues globally" is featured in the Early View module of Conservation Biology online. The section includes:

Mapping opportunities and challenges for rewilding in Europe

Silvia Ceaușu, Max Hofmann, Laetitia M. Navarro, Steve Carver, Peter H. Verburg and Henrique M. Pereira

DOI: 10.1111/cobi.12533

Conservation in Europe as a model for emerging conservation issues globally

Luigi Boitani and William J. Sutherland

DOI: 10.1111/cobi.12530

The alignment of agricultural and nature conservation policies in the European Union

Ian Hodge, Jennifer Hauck and Aletta Bonn

DOI: 10.1111/cobi.12531

Scenarios of large mammal loss in Europe for the 21st century

Carlo Rondinini and Piero Visconti

DOI: 10.1111/cobi.12532

On how much biodiversity is covered in Europe by national protected areas and by the Natura 2000 network: insights from terrestrial vertebrates

L. Maiorano, G. Amori, A. Montemaggiori, C. Rondinini, L. Santini, S. Saura and L. Boitani

DOI: 10.1111/cobi.12535

The role of agri-environment schemes in conservation and environmental management

Péter Batáry, Lynn V. Dicks, David Kleijn and William J. Sutherland

DOI: 10.1111/cobi.12536

Framing the relationship between people and nature in the context of European conservation

John D. C. Linnell, Petra Kaczensky, Ulrich Wotschikowsky, Nicolas Lescureux and Luigi Boitani

DOI: 10.1111/cobi.12534

FishBase Mirror Updates for April 2015

Fri, 29 May 2015 11:05:12 +0300

FishBase on the US and CA servers (www.fishbase.us and www.fishbase.ca) are now updated to version April 2015.

BiodivERsA3 2015 joint call

Thu, 21 May 2015 14:43:00 +0300

BiodivERsA3 has officially launched its 2015 pan-European joint call for research proposals. The call, co-funded by the European Commission, will focus on understanding and managing the biodiversity dynamics to improve ecosystem services and functioning.

BiodivERsA is a network of 29 research-funding agencies across 18 European countries. It is an ERA-NEt Co-fund, funded under the EU’s Horizon 2020 Framework Programme for Research and Innovation. BiodivERsA works to coordinate national research programmes on biodiversity across Europe and to organize international funding for research projects in this field.

The complete announcement on this call, including details on the topics, is listed here.

Scientific teams are invited to form international consortia comprising research groups from at least three countries participating in the BiodivERsA call. The complete list of participating countries can be found here.

The deadline for submission of pre-proposals (mandatory) is set on Monday 20 July 2015, 17:00 GMT +1:00. More information on the time schedule can be found here.

DEST course ‘BASICS of TAXONOMY’

Tue, 19 May 2015 10:09:00 +0300

The 4th edition of the DEST course ‘BASICS of TAXONOMY’ will take place from 5 to16 October 2015 at the Sven Lovén Centre for Marine Sciences, Kristineberg, Sweden.

Taught by renowned experts in their field, the course topics are:

- DELTA
- Digital drawing
- Scientific illustration
- Scientific writing and communication
- Scratchpads, a tool to build, publish and share information on the web

Target audience: MSc students, PhD students, early career researchers

Thanks to funding of the Royal Swedish Academy of Sciences, this 2-weeks course is offered at a discounted rate of 550 EUR.

Fee includes accommodation and meals.

More info: http://taxonomytraining.eu/content/basics-taxonomy-describing-illustrating-and-communicating-biodiversity

New life for old data: Integrating and visualizing primary biodiversity data from prospective and legacy taxonomic literature

Mon, 18 May 2015 15:38:00 +0300

XML markup of taxonomic research and specimen data is a valuable tool for structuring the incessantly accumulating biodiversity knowledge. It allows for the opportunity to collectively use the currently fragmented information for more detailed analysis.

A new research paper, published in theBiodiversity Data Journal, demonstrates how XML markup using GoldenGATE can address the challenges presented by unstructured legacy data, like those presented in the widely used PDF format. The paper demonstrates how structured primary biodiversity data can be extracted from such legacy sources and aggregated with and jointly queried with data from other Darwin Core-compatible sources, to present a visualization of these data that can communicate key information contained in biodiversity literature.

Specimen data in taxonomic literature are among the highest quality primary biodiversity data. Innovative cybertaxonomic journals such as the Biodiversity Data Journal are using workflows that preserve the data's structure and semantic specificity and disseminate electronic content to aggregators and other users that makes these data reusable.

Such structure however is lost in traditional taxonomic publishing and currently, access to that resource is cumbersome, especially for non-specialist data consumers.

The question is: how do you manage this vast distributed repository of knowledge about biodiversity to make it easily available reusable for future research?

To answer this challenge this project queried XML structured articles published in Biodiversity Data Journal along with historical taxonomic literature marked up using GoldenGATE, and represents the results as a series of standard charts. XML structured documents are maintained by the Swiss NGO Plazi and are freely available online.

In such form, data associated with specimens becomes much more valuable as it can reveal key information about a particular species, and even about the scientists who investigate them. Charts indicate at a glance, for example, what time of year and elevation range a species is likely to be found at, useful information if you want to search for it in the field.

Our accumulated biodiversity knowledge includes an estimated 2-3 billion specimens in natural history collections and 500 million pages of printed text. These are the data we need to answer questions that are relevant to our world today, like setting conservation priorities and anticipating the effects of climate change on biodiversity and ecosystem functions that affect the lives of people.

"In short, we have half a billion pages worth of biodiversity knowledge and are just learning how to query it. The real power comes when data from many articles are combined, queried, and reused for new purposes. Potential applications span the scientific, policy, and public spheres. When we all have better access to the information that already exists in the global corpus of biodiversity literature, this helps us do a better job of exploring what we don't know and wisely applying what we do." explains the lead author Dr Jeremy Miller, Naturalis Biodiversity Center.

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This project was supported by pro-iBiosphere and EU BON, two FP-7 (European Union Seventh Framework Programme, 2007-2013) grants (No 312848 and 308454).

Original source:

Miller J, Agosti D, Penev L, Sautter G, Georgiev T, Catapano T, Patterson D, King D, Pereira S, Vos R, Sierra S (2015) Integrating and visualizing primary data from prospective and legacy taxonomic literature. Biodiversity Data Journal 3: e5063. doi: 10.3897/BDJ.3.e5063

New associated partner: GFBio - German Federation for Biological Data

Fri, 15 May 2015 10:38:00 +0300

EU BON is happy to announce a new addition to our growing family of associated partners. In April 2015, the project has signed a Memorandum of Understanding with the German Federation for Biological Data (GFBio).

GFBio is a project that brings together national key players providing environmentally related biological data and services to develop the ‘German Federation for Biological Data' . The overall goal is to provide a sustainable, service oriented, national data infrastructure facilitating data sharing and stimulating data intensive science in the fields of biological and environmental research.

The federation will build on proven data archiving infrastructures and workflows such as those of PANGAEA for environmental data and the resources of Germany's major natural history collection data repositories. The new infrastructure will improve and integrate these existing components within a common technological and organizational framework.

Job Alert: Postdoctoral researcher in ecology at SLU

Mon, 11 May 2015 10:56:00 +0300

The Swedish University of Agricultural Sciences offers a new position for Postdoctoral researcher in ecology: Spatial population dynamics at a species’ northern range margin at the Department of Ecology.

The department conducts empirical and theoretical research for sustainable forest and agricultural production and efficient biological conservation. Research on populations, communities, and ecosystems forms the foundation for studying the influence of land use and climate on animals, plants, soils nutrient status, and greenhouse gas balances. Solutions are sought that will mitigate climate change, preserve threatened species, benefit biological diversity and ecosystem services, and control pests in forest and agricultural landscapes as well as in urban areas.

Duties: The postdoc researcher will study spatial population dynamics in an insect at the northern margin of its global distribution, by taking advantage of a data from a long-term study of the butterfly Pyrgus armoricanus. The main purpose of the project is to understand how climate, habitat fragmentation and habitat quality influence the regional distribution and population dynamics of this butterfly, and to use this knowledge to predict population persistence and distribution in an altered climate and after changed land use. The successful candidate wull also analyze time-series data on population dynamics in relation to weather and habitat quality. There will also be opportunities to model future regional distribution or population persistence under scenarios of future land use and climate change.

Place of work: Uppsala

Form of employment: Temporary employment, 1 year.

Deadlines: June 1, 2015

For more information on requirements and how to apply, lease visit the official job offer page: http://www.slu.se/sv/om-slu/fristaende-sidor/aktuellt/lediga-tjanster/las-mer/?eng=1&Pid=1875

Article Alert: Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence

Fri, 08 May 2015 18:11:00 +0300

A new aticle published in Ecology Letters looks into the indirect interactions among tropical tree species through shared rodent seed predators. The reasearch is part of the work of EU BON postdoc Carol X. Garzon-Lopez.

Abstract: The coexistence of numerous tree species in tropical forests is commonly explained by negative dependence of recruitment on the conspecific seed and tree density due to specialist natural enemies that attack seeds and seedlings (‘Janzen–Connell’ effects). Less known is whether guilds of shared seed predators can induce a negative dependence of recruitment on the density of different species of the same plant functional group. We studied 54 plots in tropical forest on Barro Colorado Island, Panama, with contrasting mature tree densities of three coexisting large seeded tree species with shared seed predators. Levels of seed predation were far better explained by incorporating seed densities of all three focal species than by conspecific seed density alone. Both positive and negative density dependencies were observed for different species combinations. Thus, indirect interactions via shared seed predators can either promote or reduce the coexistence of different plant functional groups in tropical forest.

Carol X. Garzon-Lopez et. al. (2015) Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence. Ecology Letters. doi: 10.1111/ele.12452

EU BON meets JRC

Fri, 08 May 2015 10:27:00 +0300

A team representing the EU BON project travelled to the Joint Research Centre (Ispra, Italy) on 23-24 April 2015 to meet with representatives of various JRC Units dealing with biodiversity.

Working in close collaboration with policy Directorate-General, the JRC’s mission is to provide EU policies with independent, evidence-based scientific and technical support, throughout the whole policy cycle. Gregoire Dubois (JRC), who seats the Advisory board of the EU BON project, chaired the two-day meeting intended to establish concrete links between EU BON and JRC.

The objectives of the meeting were hence to become familiar with JRC’s biodiversity work, present the EU BON project to JRC, and above all identify overlapping interests, so as to develop cooperation between the EU BON project and JRC. Stimulated by a number of presentations from both sides, long discussions took place, mainly centred around how can JRC and EU BON work together to ensure the long-term presence of EU BON and its products.

The ASEAN Biodiversity Updates

Thu, 30 Apr 2015 19:42:00 +0300

The ASEAN Centre for Biodiversity (ACB) publishes a monthly newsletter to keep stakeholders informed of news about biodiversity concerns and efforts that are relevant to the ASEAN region, including about the work of ACB.

In their latest issue they feature articles about:

ASEAN-Japan cooperation on nature parks management
Phl hosts international conservation financing conference
ACB briefs German researchers on coastal ecosystem management

And many more news, features and updates. To read the newsletter, please go to: http://e-news.aseanbiodiversity.org/acb_eweb_mar15/#phl

The ASEAN Centre for Biodiversity (ACB) is an intergovernmental regional centre of excellence that facilitates cooperation and coordination among the members of ASEAN, and with relevant governments and organizations on the conservation and sustainable use of biological diversity. Protecting Southeast Asia’s rich but highly threatened web of life is its main goal.

GEO BON with a new website

Thu, 30 Apr 2015 19:28:00 +0300

GEO BON announces the launch of their newly designed webpage located at the same address: www.geobon.org

The site’s home page welcomes visitors with a clean uncluttered design with featured content focused on GEO BON's to improve the acquisition, coordination and delivery of biodiversity information and services to users, particularly decision-makers, achieved through easier navigation to content, applications and products, but also for the site to serve as a data portal in future.

Go and explore if you haven't done so: www.geobon.org

EU BON Job Alert: Research Associate, University of Cambridge (Fixed Term)

Tue, 28 Apr 2015 16:26:00 +0300

The University of Cambridge invites for applications for a Research Associate to work on EU-BON, a major EU-funded research project, seeking to improve the use of biodiversity data in public policy. EU-BON will carry out research towards building a European gateway for biodiversity information, which will integrate a wide range of biodiversity data from on ground observations to remote sensing datasets and make it accessible for scientists, policy makers, and the public. The project is coordinated from the Berlin Natural History Museum with the University of Cambridge contribution being led Professor William Sutherland (Department of Zoology) and Dr Robert Doubleday (Centre for Science and Policy and Department of Geography). EU-BON started on 1 December 2012 and runs for 4.5 years.

The post The researcher will carry out research on how biodiversity data is currently used in European policy making and will contribute to analysis of the opportunities to increase its effective provision and use. Research methods are likely to combine qualitative and quantitative analysis and to focus on the use of biodiversity data in public policy contexts. The researcher will be expected to spend time working in both the Department of Zoology and the Centre for Science and Policy.

In addition to carrying out research on the use of biodiversity data in European policy making, the researcher will support Cambridge's contribution to EU BON as a whole. This will involve contributing to other workpackages as and when required. More information about EU BON can be found here:http://www.eubon.eu

Person Specification Applicants should have a PhD in a relevant field. Experience in both qualitative and quantitative analysis is desirable. Applicants should ideally have some first-hand experience of public policy processes and a willingness to travel within the European Union for research. Excellent organisational and communication skills will be essential in working as a successful part of this large, multi-partner and multinational team.

Any enquiries concerning the position can be made to Dr Robert Doubleday,rob.doubleday@csap.cam.ac.uk or Professor William Sutherland, w.sutherland@zoo.cam.ac.uk

Interviews for this post will take place on Thursday 18th June 2015.

To apply and for more information, please go to teh official job offer.

Bridging the gap between biodiversity data and policy reporting needs: An EBV perspective

Thu, 02 Apr 2015 16:52:00 +0300

Reporting under policy instruments to inform on the trends in biodiversity requires information from a range of different elements of biodiversity, from genetically viable populations to the structure of ecosystems. A new research looks into the Essential Biodiversity Variables as an analytic framework to identify ways in which gaps between biodiversity data and policy reporting needs could be bridged. The study was published in theJournal of Applied Ecology.

The Essential Biodiversity Variables (EBVs, Pereira et al. 2013) which were previously developed by ecology experts in GEO BON, is as a list of the most essential elements that need to be monitored worldwide, if we want to know how biodiversity is really changing.Example of essential variables is the population abundances of species (like the Living Plant Index from the WWF) or the extent of habitat fragmentation.

In the recently published study, funded by the EU FP7 project EU BON, scientists used the identified EBVs as a framework to analyse the gaps between the biodiversity objectives stated in international policy instruments, the indicators used to develop the related policy reports and the data that is actually available to quantify indicators and proxies.

Results of the recently published study show:

1) which aspects of biodiversity are being asked for the reporting on policy instruments. Based on this knowledge,it became apparent which aspects of biodiversity are not often asked to be in these reports and thus for which aspects policy makers are unlikely to receive information. For example information on the changes in the EBV class "Genetic Composition", was not often asked in reports, not often used in indicators and little data is directly available.

2) which of these biodiversity aspects actually end up being in the CBD reports, because scientists were able to quantify indicators. For instance, information for Ecosystem function is often asked for, but is not represented by many indicators.

3) for some EBVs data seems available to improve current reporting efforts, for instance for indicators on Ecosystem structure.

Additionally, the study identified which potentially available data could be used to improve existing indicators by adding more taxa or spatial or temporal coverage. This analysis also showed that the EBVs will not cover all the information asked in policy reporting. This is because the policy objectives also include things related to awareness raising of the public and the implementation of protection measures - aspects which are not within the scope of EBVs.

"Analytical properties, such as an identification of which data and indicators are relevant per EBV, will need to be addressed before EBVs can actually become operational and facilitate the integration of data flows for monitoring and reporting." commented the lead author of the study Dr. Ilse Geijzendorffer.

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Original Source:

Geijzendorffer, I.R., Regan, E.C., Pereira, H. M., Brotons, L., Brummitt, N., Gavish, Y., Haase, P., Martin, C.S., Mihoub, J.-B., Secades, C., Schmeller, D.S., Stoll, S., Wetzel, F. T., & Walters, M.,Journal of Applied Ecology http://onlinelibrary.wiley.com/doi/10.1111/1365-2664.12417/abstract

Additional information:

Pereira, H.M., Ferrier, S., Walters, M., Geller, G.N., Jongman, R.H.G., Scholes, R.J. M. W. Bruford, Brummitt, N. , Butchart, S.H.M., Cardoso, A.C., Coops, N.C., Dulloo, E., Faith, D.P., Freyhof, J., Gregory, R.D., Heip, C., Höft, R., Hurtt, G., Jetz, W., Karp, D.S., McGeoch, M.A., Obura, D., Onoda, Y., Pettorelli, N., Reyers, B., Sayre, R., Scharlemann, J. P. W., Stuart, S.N., Turak, E., Walpole, M., & Wegmann, M. (2013) Essential biodiversity variables. Science, 339, 277-278.

European Environment - State and Outlook 2015

Tue, 31 Mar 2015 14:45:00 +0300

The European Environment Agency has published its flagship report, the European Environment - State and Outlook 2015 (SOER 2015) .

It contains excellent online resources with detailed information, including downloadable graphs, tables and images. The report is compiled every five years and includes an assessment of trends and prospects, information on individual countries and regions, cross-country comparisons and the global context.

Aggregated level information on climate change, impacts, vulnerability and adaptation is included.

Read more and find the report online here: http://www.eea.europa.eu/soer

Northern lights and solar eclipse celebrate new data standards for biodiversity observation

Wed, 25 Mar 2015 15:13:00 +0200

EU BON and CETAF informatics groups had an astronomically successful meeting at Digitarium in Joensuu, Finland, 17-20 March 2015. The event coincided with solar eclipse and show of the decade for northern lights.

Major progress in data standards for information exchange took place during the week when the Biodiversity Information Standards TDWG organisation announced ratification of five new terms for quantitative biodiversity data, which had been proposed by the EU BON project one year earlier. The new terms include, in particular, organismQuantity and sampleSizeValue. This allows for exchange of ecological data in much wider scale than what has been possible until now. The participants of the meeting applauded for this occasion.

Northern lights over Joensuu Science Park 2015-03-18. Photo: Riitta Tegelberg

The meeting included a training workshop on new data sharing tools, and working sessions for designing the EU BON portal, which will allow using biodiversity observation data in research.

The 40 attendees came from 18 different countries.

Participants at the meeting.

During the meeting the attendees also were given presentations and demonstrations of Digitarium's equipment and methods for high-performance digitisation.

The need for a more open attitude towards invasive alien species data

Wed, 18 Mar 2015 15:51:00 +0200

New research published with the support of the FP7 large-scale bioinformatics project Building the European Biodiversity Observation Network (EU BON) and the Alien Challenge COST action reveals the importance of open data in the study and control of invasive alien species. The study was published online in open access in the journal Management of Biological Invasions.

Invasive alien species cause a wide variety of problems, including issues related to conservation; to human and animal health; to agriculture and to fisheries management. But how can science be useful to manage such potential issues?

"To advise policy makers and inform land managers on the dangers posed by and how to fight alien species we need to understand the invasion process. Ideally, we would like to be able to predict the causes, routes and progression of invasions." explains Dr. Quentin Groom, Botanic Garden Meise, Belgium.

Recently, several research groups have pioneered the process of "Horizon Scanning" for new alien species, also there have been parallel developments in the creation of dynamic ecological models to predict invasions. However, the greatest limitation to these advances is the lack of suitable data.

"The problem of invasive species is international and rapidly changing. Data are required from an extensive area, for many species and for a long period but what is currently available is patchy and often inaccessible. We argue for the importance of open data to tackle the problem of invasive alien species." explains Dr. Groom.

This new research reviews why access to data are so important to invasive alien species research and gives an overview of the reasons why data are unavailable to researchers. Currently access to data is patchy and is restricted in many ways:

Legally, the use of restrictive data licensing blocks its use.
Technically, many software systems don't adequately support sharing, particularly in their provision of unique identifiers.
Culturally, data secrecy is the default position for most organizations.

Currently invasive species data is patchy and often restricted legally, through the use of restrictive data licensing. Credit: Peter Desmet

Gradually, data are becoming more accessible and attitudes towards data access are changing. The advent of data publications allows researchers to attract citations from their data, while simultaneously making their data accessible and discoverable.

The community of biodiversity observers is highly fragmented and the creation of a European biodiversity network will improve communication so that grassroots biodiversity surveyors will understand issues of data sharing, citation and licensing that are so critical for a rapid response to invasive species.

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Original Source:

Groom QJ, Desmet P, Vanderhoeven S & Adriaens T (2015) The importance of open data for invasive alien species research, policy and management. Management of Biological Invasions 6: in press. doi: 10.3391/mbi.2015.6.2.02

FishBase and SeaLifeBase Mirror Updates

Wed, 18 Mar 2015 04:12:14 +0200

FishBase on the US and CA servers (www.fishbase.us and www.fishbase.us) are now updated to version February 2015.

The domain www.sealifebase.org is now served with load balancing between the two mirrors below.

- sealifebase.ca (UBC, Vancouver)
- sealifebase.de (Geomar, Kiel)

You will see which mirror is serving at the bottom left corner of the page.

The DE domain is recently acquired.

Second WP6 and 7 workshop

Fri, 20 Feb 2015 18:08:00 +0200

The second WP6 and 7 workshop was organised by CNRS and took place from 16 to 18 of February in Aix-en-Provence, France. During this meeting, partners brainstormed on possible cross work package papers, products and tasks. Partner’s enthusiasm for the ongoing work and possible impact of EU BON outputs fuelled energetic discussions.

Participants at the workshop. Credit: Florian Wetzel

Topics on the agenda include:

The possibilities of visualisations like Aquamaps and Fishbase to provide information for Marine policy targets or for capacity building on marine biodiversity information. We were very happy to have Sandrine Vaz from IFREMER, Montpellier joining us as an expert on marine data and its policy context.

For the EU BON business plan, the next steps were defined for its development, part of which Pan Xingliang will explore in his masters project. One of the steps will include a strategy meeting with other initiatives and European projects that face the same challenge of ensuring life of their products and networks of knowledge after the project end date.

The objective of the third stakeholder round table was further defined based on lessons learned from previous stakeholder round tables and identifying the information needs from the data portal for EU BON from our EU BON test case study regions.

EU BON acknowledged paper is classified as the fourth hottest article in Ecological Informatics

Wed, 18 Feb 2015 11:24:00 +0200

A recent paper by Duccio Rocchini et al. (2015) has been classified as the fourth hottest article in Ecological Informatics. The paper is part of the EU BON project, and discusses from a conceptual point of view, the potential of remote sensing in estimating biodiversity using various diversity indices, including alpha- and beta-diversity measurements.

Abstract:

Many geospatial tools have been advocated in spatial ecology to estimate biodiversity and its changes over space and time. Such information is essential in designing effective strategies for biodiversity conservation and management. Remote sensing is one of the most powerful approaches to identify biodiversity hotspots and predict changes in species composition in reduced time and costs. This is because, with respect to field-based methods, it allows to derive complete spatial coverages of the Earth surface under study in a short period of time. Furthermore, remote sensing provides repeated coverages of field sites, thus making studies of temporal changes in biodiversity possible. In this paper we discuss, from a conceptual point of view, the potential of remote sensing in estimating biodiversity using various diversity indices, including alpha- and beta-diversity measurements.

Original source:

Rocchini D, Hernández Stefanoni JL, He, KS (2015) Advancing species diversity estimate by remotely sensed proxies: a conceptual review. Ecological Informatics, 25: 22-28. doi:10.1016/j.ecoinf.2014.10.006

Second EU BON Roundtable: An Interview with Jose-Miguel Rubio-Iglesias

Tue, 10 Feb 2015 09:42:00 +0200

The second EU BON Roundtable took place on 27 November 2014 at the Museum für Naturkunde in Berlin. The workshop was dedicated to explore ways in which EU BON can support citizen science (CS) activities. Many partners and interested stakeholders participated, coming from different European research institutions, Natural History Museums, SMEs or representatives from European Institutions like European Commission (DG Research & Innovation and the Joint Research Centre) or the European Environmental Agency and EU-funded Citizen Observatories projects. On secondment to the Earth Observation Sector at DG Research and Innovation, European Commission, Jose-Miguel Rubio-Iglesias showed the possibilities of Citizen Science as one option to improve the science-society bridge. In the following interview he gives an overview of the topic covered and his participation at the round table.

Jose-Miguel Rubio-Iglesias gave a talk on improving the science-society-policy bridge by Citizen Science

Jose-Miguel Rubio-Iglesias, Policy Officer (Spanish National Centre for Geographic Information, on secondment to the European Commission)

Q: Where do you see the place of citizen science in the future of European research and innovation efforts?

A: I see a brilliant future of Citizen Science as a driver for research and innovation activities, especially in its shape of "Citizens' Observatories". The vertiginous increase in the use of mobile technologies, with a pervasive Internet accessible to everyone and social media usage at its peak, offers a world of opportunities for research and innovation in the domain of environmental monitoring technologies where citizens have a key role to play. Citizen science can also foster advancement in social innovation as these are normally collective actions carried out by citizens, sometimes in partnership with NGOs, researchers and public organisations, which are bringing benefits for the whole society. Furthermore, the European Union's Framework Programme for Research and Innovation, Horizon 2020, is already offering a framework to mainstream public engagement in science and research, from programming to implementation and evaluation, being citizen science a one of the key instruments to realise this objective. Data and information gathering, results interpretation and co-creation are examples of activities in which citizens can be involved, leading to different kinds of innovation, including social innovation.

Q: What are the success factors for citizen science? What are the challenges for Citizen Science on a European scale?

A: In my opinion there is no magic formula to achieve success in a citizen science activity, nor any plug-and-play solution. There are many variables that have to be considered, such as the thematic, spatial or temporal scope of the activity. But a common element that seems to be an ingredient for success is to plan carefully not only the process of engagement but the feedback mechanisms, so citizens realise their actions and the outcomes of what they have done are really being useful. Working on creating a strong perception of ownership is always a success factor on a voluntary initiative.

I see a number of challenges for Citizen Science at a European scale, especially, the need for a better coordination of the local and regional activities. This can avoid duplication of initiatives, foster best practices across activities and help position better citizen science vis-à-vis the EU and national and local governments, so citizen science can be higher up on their agendas. In this sense, I think the role of associations such as ECSA (European Citizen Science Association) is key in achieving this coordination.

Q: How can EU projects on biodiversity information like EU BON facilitate the process?

A: EU BON, like other EU projects which have biodiversity information as a focus, has an important role to make visible the knowledge treasured by citizen science groups. The European Biodiversity Portal, one of the EU BON main achievements, is a fantastic opportunity to open up the wealth of biodiversity data which has been collected by citizens throughout Europe, making it available for a better informed decision making in those areas in which biodiversity has a role.

Q: Where do you see the place of large European Earth observation projects such as EU BON in the global context?

A: The biodiversity information system resulting from EU BON is one of the main European contributions to GEO BON (GEO Biodiversity Observation Network), which is a flagship initiative of GEO (Group on Earth Observation). GEO BON is joining forces at international level to coordinate the activities relating to the Societal Benefit Area on Biodiversity of the Global Earth Observation System of Systems (GEOSS). Its main goals are to organize and improve terrestrial, freshwater and marine biodiversity observations globally and make their biodiversity data, information and forecasts more readily accessible to policymakers, managers, experts and other users. As EU BON is creating a stable and open-access platform for sharing biodiversity tools and data, taking stock of existing components such as LifeWatch or GBIF, this is clearly a step forward towards the fulfilment of the objectives of GEO BON.

At global level, EU BON and GEOBON are strategically positioned to contribute to delivery of data for the UN Convention on Biological Diversity (CBD) and the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES).

Finally, together with EU BON, other large EU Earth Observation projects, such as SIGMA or Earth2Observe, are also providing an important contribution at global level to GEO, in this case to the GEO Societal Benefit Areas of Agriculture (GEO-GLAM) and Water respectively.

NOTE: The views expressed in this interview are only of the speaker and do not necessarily reflect the official opinion of the European Commission.

SEP: More needs to be done to halt global biodiversity loss and meet Aichi targets

Fri, 06 Feb 2015 14:25:00 +0200

A new policy brief featured a recent issue of Science for Environment Policy highlights a new study suggesting that the Aichi biodiversity targets, set by the UN Convention on Biological Diversity, are unlikely to be achieved by 2020— despite some progress towards halting the global loss of biodiversity. The authors of the study call for policy responses to be strengthened if the ongoing loss of nature is to be stopped.

The loss of biodiversity affects the healthy functioning of ecosystems and the benefits they provide to people. The ongoing loss of the world’s natural diversity, which underpins all life, prompted Parties to the UN Convention on Biological Diversity (CBD) at the World Summit for Sustainable Development in 2002 to pledge reductions in the global decline in biodiversity by 2010.

The 2010 targets set by the CBD were missed. Consequently, a new set of goals to curb the loss of species and ecosystem services, supported by the 20 Aichi targets, were adopted by 193 nations in 2010. The Aichi targets, to be achieved by 2020, are part of the global Strategic Plan for Biodiversity 2011–2020.

A global panel of 51 experts, drawn from a wide range of institutions, has recently assessed mid-term progress towards meeting these targets. They based their assessment on an analysis of 55 indicators (for example, extent of wetlands) selected from 163 potential indicators, which are key measures of the world’s biodiversity. They built statistical models for each indicator, based on their status in 2010 and data trends and then projected changes to the indicators by 2020. The value for each indicator in 2010 was then compared with the projected value in 2020 to assess progression towards the 2020 Aichi targets.

Read more in the original SEP policy brief.

Original Study:

Tittensor, D.P., Walpole, M., Hill, S.L.L. et al. (2014) A mid-term analysis of progress toward international biodiversity targets. Science 346 (6206): 241- 244. DOI:10.1126/science.1257 484

Job Alert: EEA - Project Manager - Biodiversity indicators

Mon, 19 Jan 2015 10:02:00 +0200

The European Environment Agency (EEA) is organising an open competition with a view to recruiting a contract agent to work as Project Manager within the area of biodiversity indicators and assessments and further with a view to establishing a reserve list.

THE AGENCY

The EEA is an Agency of the European Union (EU) and one of the decentralised Union bodies. The EEA aims to support sustainable development and to help achieve significant and measurable improvement inEurope’s environment, through the provision of timely, targeted, relevant and reliable information to policy-making agents and the public.

More information is available on the official EEA page: http://www.eea.europa.eu/about-us/jobs/eeavacancy.2015-01-14.3625557226

The PREDICTS database

Thu, 15 Jan 2015 09:36:00 +0200

A new paper describing the PREDICTS database has been published and is now available in open-access publication in Ecology and Evolution.

PREDICTS - Projecting Responses of Ecological Diversity In Changing Terrestrial Systems - is a collaborative project aiming to use a meta-analytic approach to investigate how local biodiversity typically responds to human pressures such as land-use change, pollution, invasive species and infrastructure, and ultimately improve our ability to predict future biodiversity changes.

Abstract:

Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project – and avert – future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups – including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems –

Original Source:

Hudson L. N. et. al. (2014) The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution, Vol 4, 24: 4701–4735. DOI: 10.1002/ece3.1303

EU BON and CETAF joint informatics workshop

Tue, 13 Jan 2015 14:22:00 +0200

The 2nd EU BON training on data sharing tools will take place side by side to CETAF/EU BON informatics workshops (see full program and logistic details here). The event will be organised by UEF and Digitarium, EU BON consortium member and work package leader (WP2), in collaboration with CETAF ISTC and other EU BON work packages.

Next topics will be covered:

Introduction to GEOSS, GEO BON, EU BON (Hannu Saarenmaa)
Information architecture of EU BON (Antonio Garcia)
Data standards, Darwin Core and extensions for sample-based quantitative data (Éamonn Ó Tuama)
Demonstration of GBIF/EU BON IPT for monitoring networks (Larissa Smirnova and Franck Theeten)
Practical exercise with sample dataset (Larissa Smirnova and Franck Theeten)
Practical exercise with own data (all trainees)

The workshop will include lectures and hands-on work, so participants are required to bring their own laptops. We will provide information and instructions on software installations. If the participants want to install IPT tool themselves, they can read and learn how to de it here. For the practical exercises it’s recommended to bring own data (taxonomic, monitoring).

Place and date: Joensuu, Finland, 19 March 2015

Venue: Joensuu Science Park, Digitarium and the Conference Facility "Network Oasis"

To register, please fill in the registration form

Find the event in our calendar here.

Towards a Global Butterfly Indicator

Mon, 12 Jan 2015 11:39:00 +0200

UNEP-WCMC, Dutch Butterfly Conservation, and EU BON recently convened a workshop of 14 global experts from the field of butterfly monitoring, specifically the tropics and subtropics. The workshop has catalysed the process for the development of global butterfly monitoring guidelines and the creation of a new specialist butterfly monitoring group.

Hosted by GEO BON (Group on Earth Biodiversity Observation Network) at the offices of the German Centre for Integrative Biodiversity Research (iDiv) in Leipzig, Germany, the meeting took place on 8^th and 9^th December 2014. The global experts attending the meeting shared their significant experience and knowledge from the tropics, sub-tropics and deserts; including countries such as Papua New Guinea, Belize, Brazil, Colombia, USA, South Africa, Malaysia, and Liberia.

Blue Copper (Lycaena helle); Credit: Chris van Swaay

Butterfly populations have been monitored in Europe for over 35 years. This monitoring has used standardized protocols, produced long-term datasets, and has resulted in indicators tracking the changes in butterfly populations. These data are proving to be very valuable for informing decision-makers on biodiversity changes and are used at local, national and regional levels to inform conservation management decisions and policies. As a result of the success of schemes in Europe, butterfly monitoring is growing and is now being implemented in countries outside of Europe including North America and Israel using similar protocols.

However, the protocols for butterfly monitoring in temperate regions are not applicable in regions with high numbers of butterfly species such as the tropics. In these biomes methodologies such as fruit-bait traps, counts of puddling butterflies, and timed counts have been used. The aim of this meeting, therefore, was to agree a standard set of methodologies that could be applied globally and from which data could be aggregated through an Essential Biodiversity Variable into a Global Butterfly Indicator.

The main agenda items and points of discussion were an overview of current butterfly monitoring, structured by continent and habitat, with emphasis on the different protocols; steps to process count data into indicators and trends; essential variables required to measure changes in butterfly populations; compatibility of different protocols and the logistics of creating a global indicator; whether the entire species diversity should be measured or just a portion; and agreement on a standard set monitoring protocols.

This workshop has catalysed the development of a number of products, including: global butterfly monitoring guidelines; the development of a Global Butterfly Indicator; and a suite of scientific journal articles on butterfly monitoring in different regions of the world. The development of an Essential Biodiversity Variable (EBV) ‘butterfly population abundance’ that will facilitate the harmonisation of butterfly monitoring data from different habitat types and regions is also being developed. A new butterfly monitoring specialist group has also been established to provide support for practitioners working in the field of butterfly monitoring and to continue momentum from this workshop.

The standardization of monitoring protocols that can be implemented in any country is crucial for the robust estimation of butterfly populations globally to assess progress towards the 2020 targets of the Convention on Biological Diversity (CBD). These guidelines can also provide the foundation for developing scenarios for the future of butterfly populations under different policy and management options. The outcomes of this meeting provide a clear path to increased harmonization among the efforts of global butterfly experts in different regions and towards the establishment of a Global Butterfly Indicator.

We would like to thank GEO BON and EU BON for funding this meeting.

Participants of the butterfly monitoring experts meeting at iDiv, Leipzig, Germany, December 2014

2nd WP4 meeting: linking environment to biodiversity

Fri, 19 Dec 2014 13:50:00 +0200

A second WP4 (Link environment to biodiversity: analyses of patterns, processes and trends) meeting was held on 8 & 9 December 2014 in Brussels, to discuss progress towards objectives and set plans for future development.

Hot topics during the meeting were: GBIF data: who will use them, and how; development and use of methodology; collaboration between WP4 and the relevant WP3 (Improving tools and methods for data analysis and interface) and WP5 (EU BON testing and validation of concepts, tools, and services); as well ways to translate WP4 results for the use of policy and practice.

Image: Participants at the meeting; Credit: Dirk Schmeller

Memorandum of Understanding signed: EU BON and Socientize

Wed, 17 Dec 2014 18:39:00 +0200

A Memorandum of Understanding (MoU) was signed at the second EU BON Stakeholder Roundtable on Citizen Science between Christoph Häuser, on behalf of EU BON, and Fermin Serrano Sanz, on behalf of the Citizen Science Project Socientize at the 27^th of November 2014. The Roundtable on Citizen Science took place at the Museum für Naturkunde in Berlin, Germany and followed the General Assembly Meeting of the European Citizen Science Association.

Signing the MoU: (left) Christoph Häuser, EU BON and (right) Fermin Serrano Sanz, Socientize

Socientize (Society as e-Infrastructure through technology, innovation and creativity) is a Citizen Science Project that was funded by the European Union. The project aims to coordinate agents involved in the citizen science process and to foster and promote the usage of citizen science infrastructures. There are several linkages between the citizen science related work of EU BON and Socientize (e.g. policy recommendations for citizen science) and by signing the MoU, a further exchange and follow-ups were agreed.

2nd EU BON Stakeholder Roundtable: Citizen Science in the Spotlight

Wed, 17 Dec 2014 14:01:00 +0200

The second EU BON Roundtable took place on 27 November 2014 at the Museum für Naturkunde in Berlin. The workshop was dedicated to explore ways in which EU BON can support citizen science (CS) activities. EU BON is building a large integrated biodiversity information infrastructure in order to serve science, policy and administration as well as citizen scientists. Citizen scientists are important stakeholders, as they support the increase of knowledge in various aspects, they may debate research questions, most often they collect data, and they may interpret data and publish their results.

Many partners and interested stakeholders participated, coming from different European research institutions, Natural History Museums, SMEs or representatives from European Institutions like European Commission DG Research & Innovation, the European Environmental Agency or the JRC and EU-funded Citizen Science projects.

Participants at the 2nd EU BON Stakeholder Roundtable

The Citizen Science Roundtable started with a "Setting the scene" session where a welcome address was given by Katrin Vohland from the Museum für Naturkunde (MfN). In a brief introduction from a biodiversity data perspective, some gaps in current bio-diversity data were shown, for example the large data gaps in Eastern European data in plant datasets and the restricted access to many datasets. Christoph Häuser from the MfN outlined EU BON and its main activities in the field of Citizen Science.

As a representative from DG Research and Innovation from the European Commission, Jose-Miguel Rubio-Iglesias showed the possibilities of Citizen Science as one option to improve the science-society bridge. Lucy Robinson (ECSA/NHM London) focused on citizen science in Europe, its impact and development.

The next session targeted the question of how EU BON can possibly support data mobilization of and for citizen scientists. Antonio García Camacho from CSIC Donana showed, with a colleague from IBM, the prototype of the future EU BON data portal, to integrate biodiversity data/metadata sources into a single user interface. In another talk, Jaume Piera pointed out the requirements that exist in a CS portal, e.g. with regards to the role of citizen collaboration, the social media channels, and particularly the conceptual requirements. Important aspects here are for example that data access tracking has to be guaranteed, for giving credits to data producers and for keeping track of data use. Simao Belchior of the SME Simbiotica showed successful ways of visualizing georeferenced data, e.g. the mapping of pan-tropical forest clearing.

The next session called "A spotlight on some (meta)data provider" was started by Veljo Runnel who presented an assessment of Citizen Science involvement in biological research. Nils Valland described in his talk key success factors for citizen science and species occurrence data in Europe. Dirk Schmeller informed the audience about Volunteer Species Monitoring in Europe. He pointed out the need that governments should invest more to support and expand current monitoring initiatives. For example the EuMon project had documented 395 monitoring schemes for species, which represents a total annual cost of about €4 million, involving more than 46,000 persons devoting over 148,000 person-days/year to biodiversity monitoring activities.

In the "Synergies of European Citizen Science projects" session, presentations outlined of the main aims of several EU funded Citizen science projects (Citclops, COBWEB, Socientize). Pierre-Philippe Mathieu from the European Space Agency highlighted the new era for Earth Observation and links to Citizen Science projects. Siro Masinde from showed the Citizen Science activities of GBIF, which is one of the largest data providers of species occurrence records.

For more detailed information on the issues discussed, please see below the presentations from the meeting or contact us:

Dr. Katrin Vohland ( katrin.vohland@mfn-berlin.de)

Dr. Florian Wetzel (florian.wetzel@mfn-berlin.de)

PRESENTATIONS

1.Rubio-Iglesias - Citizen Science as science-society bridge

2. Häuser - EU BON

3. Robinson - Citizen science in Europe

4. Camacho - EU BON biodiversity portal

5. Piera - Requirements for the EU BON biodiversity

6. Belchior - Fall of data portals and future of data workflows

7. Runnel - Assessing Citizen Schience involvement

8. Arvanitidis - Crowdsourcing initiatives in the Mediterranean Basin

9. Valland - Key success factors of citizen science

10. Schmeller - Volunteer Species Monitoring

11. Mathieu - Crowd Sourcing for Space Science

12. Sanz – Socientize

13. Ceccaroni – Citclops

14. Williams – COBWEB

15. Masinde - GBIF, plans for integrating Citizen Science data

Meeting agenda

Selection of pictures from the meeting:

Key Biodiversity Areas (KBA) consultation: opportunity to contribute to a new IUCN standard

Thu, 27 Nov 2014 11:59:00 +0200

IUCN invites you to review the "Consultation Document on an IUCN Standard for the Identification of Key Biodiversity Areas", and to provide comments through the comment form. This document will form the basis of the IUCN KBA Standard that is submitted to IUCN Council for adoption

The consultation will run from the 7th of October to the 30th of November 2014. Comments received before the 31st of October 2014 will be, as much as possible, presented with the first results of this project during the IUCN World Parks Congress taking place in Sydney, Australia, 12-19 November 2014.

Contributors are not required to comment on the entire Consultation Document – any input will welcomed.

More information available here.

Special issue of Biodiversity: Call for abstracts

Thu, 27 Nov 2014 11:33:00 +0200

Connecting the dots: Integrating Biodiversity Observations to Better Track the CBD 2020 Targets.

Biodiversity: Journal of Life on Earth invites authors to share their experiences using systematic observations - including remote sensing observations - for monitoring change in biodiversity. The journal envisions submissions focusing on models for blending in-situ and remotely sensed data to fill gaps in the understanding of biodiversity status and trends.Biodiversity would welcome papers from members of the Biodiversity Indicators Partnership, working in the wider landscape of data and observation, and from contributors to the Group on Earth Observations Biodiversity Observation Network (GEO BON) exploring how Essential Biodiversity Variables could provide a framework for integrating biodiversity data. The journal also welcomes papers related to support offered by the Global Biodiversity Information Facility for implementing the Aichi Targets.

This special double issue will be published in September 2015, the midpoint of the 2020 mandate of the CBD, and following the release of the 4th edition of the Global Biodiversity Outlook at the October 2014 12th meeting of the CBD’s Conference of the Parties (COP-12) in Pyeongchang, Republic of Korea.

Prospective authors may wish to refer to UNEP/CBD/SBSTTA/17/2, Facilitating the Implementation of the Strategic Plan for Biodiversity 2011-2020 and the Aichi Biodiversity Targets through Scientific and Technical Means, prepared for the Seventeenth meeting of the CBD’s Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA-17); the SBSTTA-17 report (http://www.cbd.int/doc/?meeting=SBSTTA-17); and meeting documents for the Expert Workshop on Enhancing Biodiversity Data and Observing Systems in Support of the Implementation of the Strategic Plan for Biodiversity 2011–2020 (http://www.cbd.int/doc/?meeting=WS-BDOBS).

Please submit abstracts (250 words or less) in Times New Roman 12 pt. by 27 November 2014 to the Managing Editor, Vanessa Reid. A special board of editors will review the submitted abstracts. Only approved abstracts will be asked to proceed to final draft (4000-5000 words plus references and figures). Publication will be subject to peer review via Scholar One manuscripts online.

Job Alert: PostDoc position on modelling land biosphere dynamics

Mon, 24 Nov 2014 11:19:00 +0200

The Mediterranean Institute for Biodiversity and Ecology (IMBE, Aix-Marseille University, Aix-en-Provence, France), in its research group "Macroecology and Biogeography of Global Change (MacroBio)" has a PostDoc position open for applications. The post has a duration of 36 months, the initial contract is made for 18 months, being extended based on an assessment of performance. The position is funded by the European Commission through the FP7 Research Project LUC4C and affiliated to the French National Scientific Research Centre (CNRS).

The main topic is to improve the way LULCC processes are represented in the DGVM LPJmL through enhanced soil and vegetation process representation. Work should improve the model's capacity to project climate-LULCC interactions for the computation of net climate effects, and ecosystem services. One focus is on the representation of diverse agricultural management systems, cropland abandonment/afforestation and forest management, in order to develop ways to account for their effects on biochemical cycles and biophysics.

The PostDoc will also contribute to the actual assessment of indirect effects and trade-offs of LULCC. The team will look into the indirect effects of land-based mitigation options for climate change, and the interplay with climate change, across and within regions.

The successful candidate will have completed a doctorate in one of the environmental sciences. Substantial earth system modelling and programming skills are required, familiarity with highly modular C-code. Experience with Dynamic Global Vegetation Models will be a great advantage. The working language is English.

Interviews with successful candidates will begin after December 1, 2014. The position will be filled when a suitable candidate has been identified. To apply for this position, please send a letter of application, demonstrating your ability to understand the task, and your CV as soon as possible, but before the 31st of January 2015, by e-mail to Ms. Gabriela Boéri (Gabriela.Boeri@imbe.fr). For any questions about the task, working conditions, or the LUC4C project, please contact Dr Alberte Bondeau (alberte.bondeau@imbe.fr).

New UN- report released on mobilizing data revolution for a sustainable development: "A world that counts"

Fri, 21 Nov 2014 17:44:00 +0200

A new report "A world that counts - Mobilising the Data Revolution for Sustainable Development" was recently published. The document points out the need for globally available and freely accessible data to monitor progress of Sustainable Development Goals (SDGs), to hold governments accountable and foster sustainable development. This issue needs to be solved in a timely manner, as the gaps between developed and developing countries, between information-rich and information-poor people are increasing. Furthermore, better integrated, timely and validated information can lead to better decision-making and real-time feedback to the citizens. However, still some challenges remain, and the report points out recommendations to overcome existing limitations (countries have poor data, data arrives too late, many issues are barely covered), e.g. through a global "Network of Data Innovation Networks" that connects both organizations and experts.

The report was written by UN-IAEG, which is the United Nations Secretary-General’s Independent Expert Advisory Group on a Data Revolution for Sustainable Development and is available online here: http://www.undatarevolution.org/wp-content/uploads/2014/11/A-World-That-Counts.pdf

IPBES-3 –working documents, upcoming plenary and EU BON

Fri, 21 Nov 2014 17:42:00 +0200

The third plenary of Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) will be held from the 12.-17. January 2015 in Bonn, Germany where also EU BON partners will attend. The IPBES secretariat already released some information notes and documents for participants that plan to join the sessions. In addition to that, some working documents for IPBES-3 are released in the meantime, like the provisional agenda and others. There are also reports being published that are relevant for the work of biodiversity networks like EU BON. Interesting reports are for example the draft of the assessment on biodiversity and ecosystem services in Europe and Central Asia (where EU BON is mentioned as a relevant research network) and other working documents for the plenary.

Please find the documents under the following link that will guide you to the specific IPBES webpage: http://ipbes.net/plenary/ipbes-3.html#three

Article alert: Advancing species diversity estimate by remotely sensed proxies: A conceptual review

Thu, 20 Nov 2014 11:02:00 +0200

A new EU BON acknowledged paper "Advancing species diversity estimate by remotely sensed proxies: A conceptual review" has been recently published in the journal Ecological Informatics.

Abstract:

Original Source:

Rocchini D, Hernández-Stefanoni J L, He KS (2014) Advancing species diversity estimate by remotely sensed proxies: A conceptual review. Ecological Informatics. DOI: 10.1016/j.ecoinf.2014.10.006

UNEP-WCMC: Towards a global map of natural capital

Wed, 19 Nov 2014 10:12:00 +0200

For the first time, a composite map of the world’s ecosystem assets has been produced, covering both marine and terrestrial realms. A report for the UNEP Division of Early Warning and Assessment by UNEP-WCMC presents global maps of assets such as biodiversity, freshwater resources and soil quality.

Natural capital is fundamental to human well-being. According to the Convention on Biological Diversity, at least 40 per cent of the world’s economy and 80 per cent of the needs of the poor are derived from biological resources. We are now facing a problem where natural capital has been harvested and degraded at a rate that threatens to undermine our well-being and future economic growth.

In their latest report UNEP-WCMC have combined information about key ecosystem assets into global maps covering terrestrial and marine realms. The assets included are freshwater resources, soil quality, organic carbon, terrestrial and marine biodiversity, and global fish catch (as a proxy for marine fish stocks). The report builds on a considerable body of work in the fields of natural capital accounting and the mapping of ecosystem services.

To read more and download the full report, please follow the link: http://www.unep-wcmc.org/news/towards-a-global-map-of-natural-capital

FishBase and Fish Taxonomy Training Session 2015

Tue, 18 Nov 2014 07:30:56 +0200

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

A detailed explanation of FishBase in all its aspects;
A training in the taxonomy of African fishes;
A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). To apply for traineeship and for more information, please click HERE or HERE. Please note that for 2015, this course will be given in English only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

Upcoming: 2nd EU BON Roundtable on Citizen Science in Berlin

Fri, 14 Nov 2014 11:59:00 +0200

The next EU BON Roundtable will be held on the 27^th November, at the Museum für Naturkunde in Berlin.

The aim of the Roundtable on Citizen Science is to explore how and with which means EU BON can support citizen science activities. EU BON may serve citizen scientists in many aspects, and here the citizen science community and biodiversity data community is given a forum to exchange ideas and develop perspectives. So this roundtable brings together data provider as well as the user community and opens the discussion on the future of workflows. We will have an introductory talk of Jose-Miguel Rubio-Iglesias from the European Commission on the role of Citizen Science as one option to improve the science-society bridge, and further contributions from data providers, portal developers, and innovative thinkers.

See the final agenda below and more information in the attached pfd-Document.

CONTACT

Dr. Katrin Vohland ( katrin.vohland@mfn-berlin.de )

Dr. Florian Wetzel (florian.wetzel@mfn-berlin.de)

VIBRANT: New virtual research communities to create and share data on biodiversity

Wed, 12 Nov 2014 17:15:00 +0200

Data sharing tools developed by an EU project are helping scientists worldwide understand more about the planet’s millions of species. A new article published on CORDIS and DAE looks into the benefits of the FP7 funded project VIBRANT.

One of the biggest challenges facing natural history experts is how to classify and share the mass of data constantly being collected on the Earth’s millions of species.

The three-year VIBRANT project developed a network of online scientific communities collecting data on biodiversity and equipped them with the tools for sharing and publishing their data. Through these activities the project contributed to reducing the fragmentation of efforts aiming to develop biodiversity informatics systems and software.
Based on Scratchpads, an open-source and free to use online platform, VIBRANT has helped create hundreds of new online communities.

The communities are linked together online and feed their data into the most important international biodiversity databases. VIBRANT helps users prepare papers for publication, build bibliographic databases and create reference collections of images and observations. A tool for rapid geospatial analysis of species distributions, a citizen-science marine monitoring platform as well as a biodiversity data analysis framework are also part of the ecosystem of services developed by VIBRANT.

ANTS TO BATS, LOBSTERS TO WHALES

VIBRANT has grown the number of user communities from around 100 under EDIT, an earlier EU project, to over 580 today. Some 6 500 active users are investigating an enormous range of species, at global scale. One site alone on stick insects (phasmids) has over 1 000 users, revealing the large community of people interested in culturing phasmid species.

‘My taxonomic background is in parasitic lice, of which there are about 5 000 particular species that live on about 5 000 mammals and 10 000 birds. Fighting to study that group, I found it enormously difficult to manage all this information,’ explained VIBRANT coordinator Dr Vince Smith, of London’s Natural History Museum.
Using the Scratchpads template, professional and amateur scientists, wherever they are based in the world, create their own subject-specific websites hosted at the museum.

They share their data by publishing it online, while retaining ownership over it and respecting the terms and conditions of the network set up by VIBRANT.
Scratchpads also provides ready access to a range of analytical tools, identification keys and databases that have been developed or enhanced throughout the project.
VIBRANT has also set up a novel, community peer-reviewed, open-access journal, the Biodiversity Data Journal (BDJ). Scratchpads users can input their research into a template which then makes it possible for them to produce a specific paper, publishing it internationally, online, in the BDJ and crediting them for the research. This is made possible via the development of the Pensoft Writing Tool (PWT), which is a leading example of the next generation of scholarly publishing. The PWT is acting as an integrated authoring, peer-review publishing and online collaborative platform which links the Scratchpads to the BDJ.

BIG DATA IN THE INTERNATIONAL CONSERVATION EFFORT

VIBRANT helps all researchers to easily share and link their data with major biodiversity repositories. For example, the Scratchpads collaborate with GBIF (the Global Biodiversity Information Facility), PESI (the EU’s Pan-European Species directories Infrastructure), the Biodiversity Heritage Library and the online collaborative Encyclopedia of Life, which is aiming to document all the planet’s 1.9 million known living species.

Dr Thomas Couvreur in Cameroon is maintaining a Scratchpads community on African palms and the tropical plant family Annonaceae. ‘They provide a professional platform for collaboration between my colleagues around the world, allowing us to share resources such as photos of species, datasets, bibliography and general information,’ he commented. Another coordinator, Eli Sarnat, in California, USA, has one on ants: ‘The platform has solved a big challenge for me: what biodiversity data I should be recording and how I should be recording it.’

The VIBRANT project ran from December 2010 to November 2013. It involved 17 partners from 9 countries, led by the Natural History Museum, London, and received FP7 funding of 4.75 million euros.

DEST with new website and training programme for 2014-2015

Wed, 12 Nov 2014 13:36:00 +0200

The Distributed European School of Taxonomy (DEST) has now launched its new website and training programme for 2014-2015. DEST has been established by prominent taxonomists and other international partners during the EU funded project European Distributed Institute of Taxonomy (EDIT: 2006 – 2011). Since March 2011, the Royal Belgian Institute of Natural Sciences committed to sustain the continued management of DEST, organization of courses and related logistics.

To see the Modern Taxonomy programme offering intensive theoretical courses in various subjects go to:

http://taxonomytraining.eu/content/modern-taxonomy-2014-2015

Or have a look at the Expert-in-training programme enabling trainees to develop and strengthen skills through on-the-job-training:

http://taxonomytraining.eu/content/expert-training-2014-2015

Gap analysis and priorities for filling identified gaps in data coverage and quality

Wed, 05 Nov 2014 15:37:00 +0200

High-quality biodiversity data is essential for answering key questions on biodiversity in Europe, for example regarding the state and trends of species or for evaluating ecosystem services and functions on various scales. A new EU BON report "Gap analysis and priorities for filling identified gaps in data coverage and quality" evaluates the state of available biodiversity information and points out gaps of available biodiversity information sources.

The report aims to assess relevant data sources on biodiversity on a European and global scale. The assessment particularly evaluates the gaps of available biodiversity information sources and, after outlining the most important ones, identifies priorities for improving the data availability and gives recommendations of how they can be closed.

The report is divided into three main sections, starting first with an overall overview of gaps and limitations of biodiversity datasets. After outlining some general limitations of biodiversity data in Europe, the key findings from the specific analyses are summarized along with recommendations of how existing gaps can be closed. The last part presents a chapter containing the specific gap analysis for a selection of several main global and European datasets. The datasets represent some main sources for biodiversity data, either for specific realms (terrestrial, marine, freshwater), taxonomic groups, thematic fields (taxonomy, genetic databases) or networks of European test sites.

From Barcode of Life Data Systems to scholarly publishing systems: a case study with ten Nearctic species of Microgastrinae

Thu, 30 Oct 2014 15:31:00 +0200

An innovative workflow reveals new research potential of the Barcode of Life Data Systems (BOLD). A recently published article in the Biodiversity Data Journal (BDJ) used specimen records downloaded from BOLD in tabular format and imported these into a human-readable text developed in manuscript within the Pensoft Writting Tool (PWT). Data were used to study the species distributions of ten Nearctic species of braconid wasps from the Microgastrinae subfamily.

BOLD is originally designed to support the generation and application of DNA barcode data. However, the repository also holds unexplored treasures of additional data that provide unique potential for many other research uses.

Currently almost 4 million sequences (over 3.4 million of them DNA barcodes) are stored in BOLD, including coverage for more than 143K animal species, 53K plant species, and 16K fungi and other species, and this impressive storage of information is continuing to grow every day.

A team of researchers, led by Dr Jose Fernandez-Triana from the University of Guelph, Canada, have now explored how the unique amount of data stored on the BOLD platform can be utilised for new research purposes. Choosing tiny parasitic wasps for their case study they selected a sample of 630 specimens and 10 North American species. Data stored on BOLD were then used to uncover a significant number of new records of locality, provinces, territories and states.

The research was then secured a fast publication via BDJ, a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind.

"Import of structured data into human-readable text is important but it does not represent the whole story. More importantly, the data can be downloaded straight from the article text by anyone for further re-use, or be automatically exported to data aggregators, such as the Global Biodiversity Information Facility (GBIF). In this way, data platforms could get more peer-reviewed content from scholarly publications and scientists will be properly credited for their efforts" said Prof. Lyubomir Penev, founder of Pensoft Publishers.

###

Original Source:

Fernandez-Triana J, Penev L, Ratnasingham S, Smith M, Sones J, Telfer A, deWaard J, Hebert P (2014) Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae). Biodiversity Data Journal 2: e4153. doi: 10.3897/BDJ.2.e4153

Additional information:

The workflow is part of the Data Publishing Toolkit elaborated within the EU FP7 funded project EU BON (Grant agreement No 308454).

Job Alert: WCMC Postdoctoral Scientist

Wed, 29 Oct 2014 16:57:00 +0200

The World Conservation Monitoring Centre (WCMC) is looking to hire a Postdoctoral Scientist as part of the Nippon Foundation – University of British Columbia Nereus Program (www.nereusprogram.org). In association with the Department of Geography, University of Cambridge, this international collaboration is focused on the prediction of future global ocean fisheries, and will contribute to global sustainable fisheries and ocean management.

The role: The primary research focus of this position is to work in collaboration with UNEP-WCMC, Department of Geography, Cambridge University, and other partners on the Nippon Foundation – UBC Nereus Program to research the drivers of change in productivity in critical marine and coastal ecosystems and their impacts on fisheries-related ecosystem services.

Key responsibilities: The post holder will build upon the work of a previous post-doctoral scientist to simulate global patterns of marine ecosystem structure and function with an emphasis on fisheries production and food security. Specifically, they will improve the ecological realism of an existing dynamic ecosystem model recently published by WCMC and Microsoft Research (the Madingley model, www.madingleymodel.org) – extending the representation of climate and incorporating data on fishing pressure.

The candidate: The successful candidate will hold a PhD in marine or coastal ecology, or a related discipline with a strong emphasis on spatial analysis and modelling. They will have extensive knowledge of and experience in mathematical ecosystem modelling, programming and spatial statistics. They will also have carried out significant research at the global scale and will hold a proven record of academic performance. Furthermore, they will have an understanding of the essential characteristics of successful partnership-building and will be able to demonstrate the ability to work collaboratively and internationally.

Closing date: 2014-11-28

More information available in the ortiginal job offer: http://www.unep-wcmc.org/vacancies/postdoctoral-scientist-ad861

European Journal of Taxonomy #100

Tue, 28 Oct 2014 12:04:11 +0200

The European Journal of Taxonomy is a peer-reviewed international journal in descriptive taxonomy, covering the eukaryotic world. The content range from descriptions of new species to large inventories of different groups - so far more than 400 new species are described in EJT. Its content is fully electronic and Open Access. It is published and funded by a consortium of European natural history institutions. Neither authors nor readers have to pay fees.

The 100th issue of EJT, which was published 24 October 2014, comprises a beautifully illustrated monograph on African millipedes, adding 20 new species to our list of new taxa. Author is Professor Henrik Enghoff from The Natural History Museum of Denmark, University of Copenhagen.

No 100 (2014): A mountain of millipedes I: An endemic species-group of the genus Chaleponcus Attems, 1914, from the Udzungwa Mountains, Tanzania (Diplopoda, Spirostreptida, Odontopygidae). Henrik Enghoff

EJT normally is an e-only journal, but on this occasion the editorial team has decided to print a limited number of hard copies, to be distributed amongst the Natural History Institutions around the world.

Professor Henrik Enghoff represents EU BON partner UCPH.

BioVeL in Practice and in Future

Thu, 23 Oct 2014 13:45:00 +0300

BioVel is organizing a one-day workshop "BioVeL: In Practice and in Future". The event will take place on 13 Nov 2014 in Institut Océanographique, Paris, France. It aims at sharing BioVel experience obtained during the project's efforts to build a virtual laboratory for biodiversity research. Plans for the future of BioVel will be also presented.

BioVeL partners are pleased to invite you to
"BioVeL in Practice and in Future"

November 13, 2014, 9:00-4:30
Institut Océanographique, 195 rue Saint Jacques, Paris 5e

This one-day event aims at sharing with participants what we did and what we’ve learned during our efforts to build a virtual laboratory for biodiversity research. We will also present our plans for the future and invite the audience to take a role in it.

BioVeL is a pilot implementation of some of the core ideas from the LifeWatch Preparatory Phase. In the past three years we’ve worked with the biodiversity research community to construct, test, and revise some essential elements of a robust e-infrastructure for biodiversity and ecosystem research. At the meeting we want to present the results we have produced and the experience we’ve gained, as well as discussing the coming tasks for our community.

The event will be structured around the 3 key goals that encapsulate the BIH2013 initiative.

Integration: Making better use of existing data and tools.
Cooperation: Working together towards a holistic understanding of biodiversity
and ecosystems.
Promotion: Informatics leadership to serve the needs of science and society.

Detailed programme here
Registration required here

Article Alert: Ten Ways Remote Sensing Can Contribute to Conservation

Tue, 21 Oct 2014 17:31:00 +0300

Abstract: In an effort to increase conservation effectiveness through the use of Earth observation technologies, a group of remote sensing scientists affiliated with government and academic institutions and conservation organizations identified 10 questions in conservation for which the potential to be answered would be greatly increased by use of remotely sensed data and analyses of those data. Our goals were to increase conservation practitioners’ use of remote sensing to support their work, increase collaboration between the conservation science and remote sensing communities, identify and develop new and innovative uses of remote sensing for advancing conservation science, provide guidance to space agencies on how future satellite missions can support conservation science, and generate support from the public and private sector in the use of remote sensing data to address the 10 conservation questions. We identified a broad initial list of questions on the basis of an email chain-referral survey. We then used a workshop-based iterative and collaborative approach to whittle the list down to these final questions (which represent 10 major themes in conservation): How can global Earth observation data be used to model species distributions and abundances? How can remote sensing improve the understanding of animal movements? How can remotely sensed ecosystem variables be used to understand, monitor, and predict ecosystem response and resilience to multiple stressors? How can remote sensing be used to monitor the effects of climate on ecosystems? How can near real-time ecosystem monitoring catalyze threat reduction, governance and regulation compliance, and resource management decisions? How can remote sensing inform configuration of protected area networks at spatial extents relevant to populations of target species and ecosystem services? How can remote sensing-derived products be used to value and monitor changes in ecosystem services? How can remote sensing be used to monitor and evaluate the effectiveness of conservation efforts? How does the expansion and intensification of agriculture and aquaculture alter ecosystems and the services they provide? How can remote sensing be used to determine the degree to which ecosystems are being disturbed or degraded and the effects of these changes on species and ecosystem functions?

Original Source:

Rose R. A. et al. (2014) Ten Ways Remote Sensing Can Contribute to Conservation. Conservation Biology. Vol. 28, Issue 5. DOI: 10.1111/cobi.12397

Nature-Based Solutions: Innovation potential for Smart, Sustainable and Inclusive Growth in Europe

Fri, 17 Oct 2014 16:30:00 +0300

On Tuesday 30 September 2014, the European Parliament Intergroup on "Climate Change, Biodiversity and Sustainable Development", in collaboration with the European Commission and the International Union for Conservation of Nature (IUCN), organised a full day conference entitled: "Nature-Based Solutions: Innovation potential for Smart, Sustainable and Inclusive Growth in Europe."

Bringing together 140 participants including representatives from the European Institutions, local and regional authorities, research institutes, NGOs and International organisations, as well as private sector representatives, this conference aimed at promoting the solutions that nature can offer in tackling major challenges, such as climate change and natural disasters, in ensuring food security to an increasing population, in protecting the health of European citizens, and the conservation of biodiversity in the EU and at the global level.

The speakers, panellists and participants in the audience all agreed that using nature to tackle some of the most pressing challenges of our time can be cost-effective, can help safeguard the environment and halt biodiversity loss, and can provide numerous economic and social benefits by creating jobs and growth and by stimulating innovation.

Read more and find results from the conference here.

DINA Technical workshop 16-18 September Stockholm

Fri, 10 Oct 2014 16:08:07 +0300

An EU-BON Workshop focusing on the DINA system - "Alpha version of mobilization system – the DINA-system MS141" - was hosted the 16. to 18. September 2014 by the Swedish Museum of Natural History in Stockholm.

Target group: programmers, developers and system engineers, but the workshop was open to anybody who was interested to learn more about the DINA-system.

Content included:

Presentations from all DINA-partners
APIs, service oriented architecture and road map for distributed development, guidelines and principles on how to build a module and join the DINA-system
Case studies
Delivery options: creating installations from hosted environment, virtual machines down to source code

For program, particpants list, presentations etc please vist the DINA wiki

Aichi Targets Passport, 2014 Edition: Browse the Aichi Biodiversity Targets and their indicators on your mobile

Fri, 10 Oct 2014 10:11:00 +0300

The latest instalment of the Aichi Targets Passport is available now to download as an app from iTunes and Google Play.

As the flagship publication of the Biodiversity Indicators Partnership (BIP), the Aichi Targets Passport provides annual updates on the global biodiversity indicators that monitor progress towards the Strategic Plan for Biodiversity 2011-2020 and the underlying Aichi Biodiversity Targets.

The suite of indicators presented in the Aichi Targets Passport was brought together by the BIP. They are as far as possible, global in their coverage, scientifically valid and peer reviewed, and relevant to the Aichi Biodiversity Targets. In particular, indicators are presented to highlight the progress that has been made towards each target so far and what baselines exist from which future progress can be monitored.

The Aichi Targets Passport was first released as a "proof of concept" in October 2012 and included one or two indicators for each Aichi Biodiversity Target. Since the release of the Beta version, the BIP Partnership has continued working to enhance and increase the number of global indicators available for each of the targets. In its app format, the information contained in the Aichi Targets Passport is at your fingertips at any time.

This latest edition of the Aichi Targets Passport has been released in tandem with the fourth edition of the Convention on Biological Diversity’s Global Biodiversity Outlook (GBO-4). In addition to information on which of the Aichi Biodiversity Targets is on-course to completion and which targets require more action, GBO-4 presents options that could halt further biodiversity loss.

The indicators presented in the Aichi Targets Passport are those contained in CBD decision XI/3 with some additional indicators that have been, or are being, developed to fill gaps.

To download the Aichi Targets Passport visit: http://www.bipindicators.net/resource/aichipassport

iTunes: http://goo.gl/dOWujN

Google Play: http://goo.gl/BN6AfG

Global Biodiversity Outlook 4: a mid-term assessment of progress towards the implementation of the Strategic Plan for Biodiversity 2011-2020

Wed, 08 Oct 2014 13:15:00 +0300

The 4th Global Biodiversity Outlook (GBO 4) was officially launched on 6 Oct 2014, during the opening day of the Twelfth Meeting of the Conference of the Parties to the Convention on Biological Diversity (COP 12) in Pyeongchang, Korea. Global Biodiversity Outlook (GBO) is the flagship publication of the Convention on Biological Diversity. It is a periodic report that summarizes the latest data on the status and trends of biodiversity and draws conclusions relevant to the further implementation of the Convention.

GBO 4 is a comprehensive report that serves as a mid-term analysis towards the 20 "Aichi Biodiversity Targets". The report states significant progress towards meeting some components of the majority of the Aichi Biodiversity Targets. Some target components, such as conserving at least 17 per cent of terrestrial and inland water areas, are on track to be met. However, in most cases this progress is seen as not sufficient to achieve the targets set for 2020, and additional action is required to keep the Strategic Plan for Biodiversity 2011–2020 on course.

The full report can be accessed here: http://www.cbd.int/gbo4/

WWF Report: 52 Percent of the World’s Biodiversity Is Gone

Wed, 08 Oct 2014 11:04:00 +0300

When the World Wildlife Fund (WWF) released its Living Planet Report 2014 on September 30, it wasn’t the usual doom-and-gloom environmental news story that is forgotten the next day.

The report — the result of a science-based study using 10,380 populations from 3,038 species of amphibians, birds, fish, mammals, and reptiles from around the globe — is garnering worldwide attention for its sit-up-and-take-notice findings: between 1970 and 2010, the planet has lost 52 percent of its biodiversity. In the same forty-year period, the human population has nearly doubled. Those figures take a while to sink in, especially since the previous WWF report that analyzed animal populations, published in 2012, showed a decline of only 28 percent over a similar time frame.

Specifically, the WWF biennial report found that we have lost 76 percent of freshwater wildlife, 39 percent of terrestrial wildlife, and 39 percent of marine wildlife since 1970. While some animal species numbers are increasing and some are stable, the declining populations are decreasing sorapidly that the overall trend is down. Latin American biodiversity took the biggest plunge, diminishing by 83 percent. Statistics boil down to the fact that every year, we use 1.5 planet’s worth of natural resources. If we all lived the lifestyle of a typical United States resident, we would need 3.9 planets per year. If we all had the footprint of the average citizen of Qatar, we would need 4.8 planets. The term "overshoot day" is defined as the date when we have used up our annual supply of renewable resources and start spending down the Earth’s natural capital. In 2014, that day was August 20.

The cause for this staggering demise in biodiversity is human activities. We have degraded natural habitats by clearing forests, plowing grasslands, and polluting waters; and have overhunted the land and overfished the oceans. A single culprit, climate change, is now responsible for 7.1 percent of the current declines in animal populations, but its toll is on the rise.

While the WWF Living Planet Report 2014 is distressing, it notes some conservation success stories.Mountain gorillas in Africa are rebounding in the Democratic Republic of the Congo, Rwanda, and Uganda due, in part, to ecotourism. And after the Nepalese government cracked down on poaching in five protected areas, the nation’s tiger population started to increase. The declining trend in worldwide biodiversity can be mitigated and reversed. To achieve sustainability again, each country’s per capita ecological footprint must be less than the per capita biocapacity available, while still maintaining a decent standard of living for its people.

Article Alert: Scientific names of organisms: attribution, rights, and licensing

Wed, 24 Sep 2014 10:24:00 +0300

Background: As biological disciplines extend into the ‘big data’ world, they will need a names-based infrastructure toindex and interconnect distributed data. The infrastructure must have access to all names of all organisms if it is to manage all information. Those who compile lists of species hold different views as to the intellectual property rights that apply to the lists. This creates uncertainty that impedes the development of a much-needed infrastructure for sharing biological data in the digital world.

Findings: The laws in the United States of America and European Union are consistent with the position that scientific names of organisms and their compilation in checklists, classifications or taxonomic revisions are not subject to copyright. Compilations of names, such as classifications or checklists, are not creative in the sense of copyright law. Many content providers desire credit for their efforts.

Conclusions: A ‘blue list’ identifies elements of checklists, classifications and monographs to which intellectual property rights do not apply. To promote sharing, authors of taxonomic content, compilers, intermediaries, and aggregators should receive citable recognition for their contributions, with the greatest recognition being given to the originating authors. Mechanisms for achieving this are discussed.

Original Source: Patterson et al. Scientific names of organisms: attribution, rights, and licensing, BMC Research Notes 2014, 7:79. doi: 10.1186/1471-2105-12-S15-S1

Full article available at: http://dx.doi.org/10.1186/1471-2105-12-S15-S1

Citizens’ Observatories: Five EU FP7 Projects Focused on Citizen Science

Tue, 23 Sep 2014 15:28:00 +0300

Five projects focused on citizen science began their life in autumn 2012 as a part of the topic ENV.2012.6.5-1 "Developing community based environmental monitoring and information systems using innovative and novel earth observation applications". Their goals include developing novel technologies and applications in the domain of Earth Observation; exploiting portable devices (smartphones, tablets, etc.) and enabling effective participation by citizens in environmental stewardship based on broad stakeholder and user involvement in support of both community and policy priorities.

These projects are:

CITI-SENSE - aiming to empower citizens to both contribute towards, and participate in environmental governance, by developing up to 30 Citizens’ Observatories supporting a range of services related to environmental issues of societal concern with participatory sensing tools and methods being central.

OmniScientis - combining the active participation of the stakeholders, especially citizens, with the implementation of innovative technologies to improve the governance of odour nuisance. OMNISCIENTIS implements an odour monitoring and information system allowing feedback in real-time, based on a web-based Service Platform.

Citclops - developing an observatory based on citizens’ science applications for the bio-optical monitoring of coast and ocean. Specifically, the Citclops action develops systems to retrieve and use data on the colour, transparency and fluorescence of seawater using low-cost sensors and smart phones along with contextual information.

COBWEB - seeking to design, develop and validate the necessary software infrastructure to facilitate and make possible the opportunistic harvesting and quality control of crowdsourced environmental data.

WeSenseIt - enabling citizens to become active stakeholders in information capturing, evaluation and communication for the water environment including flood risk.

Together these projects will enable sharing of data and information through advanced data management strategies based on open e-collaboration, addressing questions of privacy, data standards, quality and reliability.

The Facebook page ‘Citizens’ Observatories’ group acts as one focal point for the development and promotion of ‘Citizens' Observatories worldwide‘ as an essential tool and a common perspective to better observing, understanding, protecting and enhancing our environment.

For more information on the diferent projects, please visit the dedicated Citizens' Observatories webpage: www.citizen-obs.eu

Memorandum of Understanding signed between EU BON and NINA

Mon, 22 Sep 2014 17:58:00 +0300

A memorandum of understanding has been signed between EU BON and Norwegian Institute for Nature Research (NINA). The hand over took place at the 21st GBIF Governing Board (GB21) in New Delhi (India) on 16-18 September 2014 between EU BON project co-ordinator Christoph Häuser and Roald Vang (Head of Department on Information technology) and Frank Hanssen from NINA.

IMAGE: At the handover: EU BON co-ordinator Christoph Häuser and Roald Vang (Head of Department on Information technology) and Frank Hanssen from NINA.

The Norwegian Institute for Nature Research (NINA) is Norway’s leading institution for applied ecological research, with broad-based expertise on the genetic, population, species, ecosystem and landscape level, in terrestrial, freshwater and coastal marine environments. The core activities encompass strategic ecological research integrated with long-term monitoring, as well as a variety of environmental assessments and development of methodologies. Most work is aimed at improving the understanding of biodiversity, ecosystem services, ecological processes and their main drivers to facilitate better management of ecosystem services and resources. NINA addresses a wide variety of interdisciplinary issues involving both ecologists and social scientists, and plays an important role in European and other international research cooperation.

ExpeER International Conference 2014

Mon, 22 Sep 2014 16:57:00 +0300

The "International Conference on Experimentation in Ecosystem Research in a Changing World: Challenges and Opportunities" will take place on the 24th and 25th of September at the National Museum of Natural History (auditorium de la Grande Galerie de l'Evolution), Paris, France.

Context:

The Earth's rapidly changing environment is putting critical ecosystem services at risk. There are many challenges involved in understanding global environmental changes, and in providing societies with the policy-relevant knowledge base to deal with them. These challenges will reach across many aspects of scientific endeavour. Indeed, the research community requires state-of-the-art research infrastructures (RIs) to have the capability to explain and predict global environmental changes. In this context the Experimentation in Ecosystem Research conference will provide a platform for discussions on cutting-edge technological tools, large-scale integrative experimental design, technical constraints, data access and last but not least ecosystem modelling. The conference will attract speakers and delegates from around the world and will offer opportunities to reinforce global cooperation.

Main topics:

Grand challenges: With the current set of Experimental Research infrastructures in ecosystem science, do we have the capacity to tackle the grand challenges of today and tomorrow?
In vitro and in natura : How realistic are they, and how they can be better linked?
Technologies: Which emerging technologies could enhance (or are needed for) the performance and services offered by our RIs?
Data: Towards an e-infrastructure for ecosystem research - challenges and opportunities
Modelling: How accurate is our capacity to forecast and upscale, and what is missing? How can we communicate uncertainty? How do we strike the right balance between modelling and experiments?

The conference is organized under the framework of the European FP7 project ExpeER ( www.expeeronline.eu )

Find out more in the flyer attached below or on the event's website: https://colloque6.inra.fr/expeer-conference

Contributions on Fauna Europaea: Data papers as innovative model on expert involvement

Thu, 18 Sep 2014 10:00:00 +0300

Fauna Europaea started in 2000 as an EC-FP5 four-year project, delivering its first release in 2004. After 14 years of steady progress and successful participations in several EC projects, as a part of the EC-FP7 European Biodiversity Observation Network project (EU BON), to increase the general awareness of the work done by the contributors and to extend the general dissemination of the Fauna Europaea results, the Biodiversity Data Journal has applied its novel e-Publishing tools to prepare data papers for all 56 major taxonomic groups.

Fauna Europaea provides a public web-service with an index of scientific names (including important synonyms) of all living European land and freshwater animals, their geographical distribution at country level, and some additional information. The Fauna Europaea project covers about 230,000 taxonomic names, including 130,000 species name. This represents a huge effort by more than 400 contributing specialists throughout Europe and is a unique (standard) reference suitable for many users in science, government, industry, nature conservation and education.

'Contributions on Fauna Europaea' is the second series launched by the Biodiversity Data Journal after the Checklist of British and Irish Hymenoptera and the first one that embraces thematic data-papers structured in a common pattern extracted from a large database. This novel publication model will assemble in a single-issue 56 data-papers on different taxonomic groups covered by the Fauna Europaea project in the period 2000-2014 and a range of accompanying papers highlighting various aspects of this project (gap-analysis, software design, taxonomic assessments, etc.).

This is the first collection of data-papers of this scale. It will formalise and effectively publish the results of nearly 500 contributors building the largest European animal (taxonomic) database. The new publication model provides a reliable mechanism for citation and bibliographic indexing of large and uniformly structured databases.

"The publication of Fauna Europaea data papers brings a number of benefits for science, for example it stimulates experts to hand-over descriptive details on their groups, triggers new ways of community networking and participation, motivates experts to update their data, supports a better documentation of their achievements, including issues like 'micro-publications', and increase an ownership feeling with the associated effort" said Dr Yde de Jong, coordinator of the Fauna Europaea and Pan-European Species directories Infrastructure (PESI) projects.

The launch of this large collection of data papers coincides with one more cutting-edge innovation of the Biodiversity Data Journal, the publication of an API, a first of its kind, to import complex and data-rich manuscripts, which include text, data, images, in-text citations, references, in fact anything that a manuscript may contain.

"I am happy that these exciting innovations coincided with the first birthday of the Biodiversity Data Journal. Just a year ago we launched this new concept with the motto: Making your data count! These novel approaches and tools are an excellent example how our concept evolved!" comments Prof. Lyubomir Penev, Managing Director of Pensoft Publishers.

###

Original Sources:

de Jong Y, Verbeek M, Michelsen V, Bjørn P, Los W, Steeman F, Bailly N, Basire C, Chylarecki P, Stloukal E, Hagedorn G, Wetzel F, Glöckler F, Kroupa A, Korb G, Hoffmann A, Häuser C, Kohlbecker A, Müller A, Güntsch A, Stoev P, Penev L (2014) Fauna Europaea – all European animal species on the web. Biodiversity Data Journal 2: e4034. doi: 10.3897/BDJ.2.e4034

Gibson D, Bray R, Hunt D, Georgiev B, Scholz T, Harris P, Bakke T, Pojmanska T, Niewiadomska K, Kostadinova A, Tkach V, Bain O, Durette-Desset M, Gibbons L, Moravec F, Petter A, Dimitrova Z, Buchmann K, Valtonen E, de Jong Y (2014) Fauna Europaea: Helminths (Animal Parasitic). Biodiversity Data Journal 2: e1060. doi: 10.3897/BDJ.2.e1060

Re-publication of 'Flora of Northumberland and Durham' (1831): A dramatic account of change

Fri, 12 Sep 2014 14:55:00 +0300

The classical treatise "Flora of Northumberland and Durham" by Nathaniel John Winch is re-published through the innovative Advanced Books platform as an example of combining modern information technology together with historical scholarship to create a new sort of resource and data re-use. This publication will be supporting ongoing research on the botany of the region, which can be seen as a model for other regions in Europe.

The on-line semantically enriched re-publication marries the meticulous detail of old books with the interconnectedness of the internet bringing advantages of the digitization and markup efforts such as data extraction and collation, distribution and re-use of content, archiving of different data elements in relevant repositories and so on.

"Historic biodiversity literature is not just of cultural interest, it can be used to chart biogeographic change and help us understand the impacts of environmental change on biodiversity. Even if we are trying to predict future scenarios for biodiversity, understanding the changes of the past will help understand the changes we should expect in the future" said Dr Quentin Groom from the Meise Botanical Garden, Belgium, who initiated the project and marked up the original text.

The North-east of England has seen many changes since the publication of Winch's Flora. In the 19th Century the area was a powerhouse of the industrial revolution. It was an important coal mining area and significant for the production of iron and steel. It was also a centre for industries such as shipbuilding and engineering. In contrast the uplands in the west of the region were some of the most isolated areas in England, covered in blanket bog and rarely visited.

Since that time heavy industry and mining have declined, but the population has continued to grow. Agriculture and forestry have become mechanized changing the countryside perhaps beyond the recognition of Winch. Many of the plants and localities he mentions have disappeared and a large number of new species have been introduced. The local botanists are still very active in the region. With GPS systems and modern maps they are mapping the region's flora in ever more detail.

The extensive efforts of Quentin Groom from the Botanic Garden Meise and editor of this re-publication combined with the cutting-edge technologies for semantic enhancements used by Pensoft's Advanced Books platform, have resulted in additional details including links to the original citations and coordinates of the mentioned localities. In some cases the habitat that Winch described for a locality differs dramatically from what can be found in the same location nowadays.

The flora, for example, frequently mentions Prestwick Carr, an area of lowland bog, once full of rare species. Sadly it was largely drained just thirty years after the publication of the flora. Yet in recent years the Northumberland Wildlife Trust has been working to restore the bog to its former glory. "When reading Winch's flora, it is easy to see what has been lost, but more importantly what remains to be conserved", comments Groom.

The re-publication of Winch's flora is just one step towards fully understanding all the impacts on wild plants of all the environmental changes that have occurred since the 19th century. Nevertheless, digitization of this flora not only tells us about plants but also about the history of science. Between the lines of this flora one can see a rudimentary understanding of ecology and the beginnings of research on phytogeography.

Consider that in 1831 Charles Darwin set sail on the Beagle, collecting and cataloguing biodiversity around the world, much as Winch had done in North-east England over the preceding 30 years. Field botany at the time was not just a hobby, but a serious pursuit that led to many new discoveries.

Understanding the causes of biodiversity change is only possible if you have data over a long period. The North-east England has an enviable botanical history dating back to William Turner (1508-1568), the so-called, Father of English Botany, who came from Morpeth in Northumberland. Yet he was only the first in a long list of North-eastern botanists, including John Wallis (1714-1793), Nathaniel John Winch (1769-1838), John Gilbert Baker (1834-1920), George Ralph Tate (1805-1871), Gordon Graham and George Swan (1917). Their publications and the works of many others have contributed to a large corpus of literature on the region's flora.

August 2014 FishBase Updates

Tue, 09 Sep 2014 12:27:01 +0300

The August 2014 updates of FishBase are now available online!
See: www.fishbase.us, www.fishbase.ca, www.fishbase.sa

FishBase stats to date: (32900 Species, 303000 Common names, 54800 Pictures, 51400 References, 2150 Collaborators, 800000 Visits/Month)

Thanks for your continuous patronage and support!

EU BON Newsletter, Issue 3 is out!

Fri, 05 Sep 2014 17:36:00 +0300

The third issue of the EU BON newsletter is now out.

This issue contains information about our new associated partners, alongside news from the project, interviews and articles from international and project meetings, as well as announcements for future events of interest.

To download the newsletter, please click on the image below.

It is also available for download in the project’s Media Center alongside the previous 2 issues.

Creative-B final event - Registration open

Thu, 04 Sep 2014 14:36:00 +0300

The Creative-B project final even will take place on 26 Sep 2014 in Brussels. During this event, a roadmap of global data infrastructures supporting biodiversity and ecosystem research will be presented.

In the last two decades quite a number of activities emerged to manage, share and deploy the fast growing data volumes from observations, collections, sensors and other data sources in biodiversity and ecosystem research. This data "gravity" pushed new applications and services, resulting in the development and establishment of large-scale research infrastructures. Following an initiative of the European LifeWatch research infrastructure, a number of large-scale data research infrastructures* with a global outreach in this scientific area teamed together in the project Creative-B (Coordination of Research e-Infrastructures Activities Toward an International Virtual Environment for Biodiversity)**.

The collaboration resulted in drafting a global Roadmap focusing on common priorities and infrastructure engagement, enhancing infrastructure interoperability, and the legal and governance implications. Specific issues are addressing challenges to sustain data availability and services, user interaction and value delivery, cooperation for infrastructure interoperability as well as legal interoperability, and finally education and training. This Roadmap shows how global interaction is promoting complementary development while fostering synergy for supporting frontier research and addressing global and societal challenges. The event in Brussels will also highlight some implications for other stakeholders such as funding and governmental bodies.

Registration is now open here: http://creative-b-2014.sciencesconf.org/registration

Find out more on the event website, and in the event program.

Special "Biodiversity and Conservation" sessions featured at ISRSE 36

Mon, 01 Sep 2014 16:54:00 +0300

36th International Symposium on Remote Sensing of Environment (ISRSE) will take place on May 11-15, 2015 in Berlin, Germany.

The event will feature special sessions "Biodiversity and Conservation" aiming to show the developments and potential of remote sensing within biodiversity and conservation science.

This 36th Symposium will represent a major event in the long series of internationally recognized ISRSE meetings. The overall theme of the symposium is the use of Earth Observation systems and related Remote Sensing techniques for understanding and managing the Earth environment and resources.

Find out more about this session in the brochure attached below or n the event website: www.isrse36.org/

ECOSCOPE seminar: Observation systems & EBVs concept

Mon, 01 Sep 2014 16:20:00 +0300

ECOSCOPE (Network of Biodiversity Research Observatories) associates the SINP (Information System on Nature and Landscapes) to a shared event that will focus on the complementarity between "research - expertise" on biodiversity through the emerging concept of "Essential Biodiversity Variables" (EBVs).

The seminar, scheduled for Monday, November 3, 2014 in Paris, is open to scientists, observatories’ managers and their teams, and to all who are involved in the study of the state and dynamics of biodiversity for research and expertise.

The aims of this seminar are to increase awareness and understanding of EBVs, their interest for observatories (visibility, synergies) to benefit to observatories’ scientific managers and data users. It is also to define how this concept can be implemented at national scale, in connection with international initiatives.

Programme will be available in available in September, for registration: follow the link !

LTER Europe - a new associated partner

Mon, 01 Sep 2014 15:55:00 +0300

EU BON is pleased to welcome a new associated partner Long-Term Ecosystem Research (LTER) Europe to its family!

Long-Term Ecosystem Research (LTER) is an essential component of world-wide efforts to better understand ecosystems. This comprises their structure, functions, and long-term response to environmental, societal and economic drivers. LTER contributes to the knowledge base informing policy and to the development of management options in response to the Grand Challenges under Global Change.

From the beginning (around 2003) the design of LTER-Europe has focussed on the integration of natural sciences and ecosystem research approaches, including the human dimension. LTER-Europe was heavily involved in conceptualizing socio-ecological research (LTSER). As well as LTER Sites, LTER-Europe features LTSER Platforms, acting as test infrastructures for a new generation of ecosystem research across European environmental and socio-economic gradients.

Biodiversity and Food Security – From Trade-offs to Synergies

Fri, 22 Aug 2014 16:21:00 +0300

The 3rd International Conference on Biodiversity and the UN Millennium Development Goals will take place between October 29-31, 2014 in Aix-en-Provence, France. under the tematic title "Biodiversity and Food Security – From Trade-offs to Synergies".

This conference is the third in a series, organized by the French CNRS Institut Ecologie et Environnement (InEE) and the German Leibniz Association (WGL). The conference is based on invited keynotes and contributed posters for any of the topics relevant to the conference theme. Keynote speakers are now confirmed, including Professor José Sarukhán, UNAM, México, and Professor Jacqueline McGlade, UNEP, Nairobi.

Across scales from genes to species, landscapes and biomes, biodiversity is an important resource for humanity. It is the key for a broad range of services provided by ecosystems. Biodiversity helps regulate the nutrient cycle, water (e.g. floods) and mitigates impacts of climate change. Biodiversity is also of direct importance for human well-being and for cultural and other values including recreation. The provisioning of clean water and diverse food supply makes it vital for all people.

Biodiversity at all levels, including the diversity of genes, species and ecosystems, is lost at alarming rates. Critical factors for these trends are habitat destruction, global warming and the uncontrolled spread of alien species. Pollution, nitrogen deposition and shifts in precipitation further affect biodiversity.

Food security faces significant challenges due to population growth, poverty, globalization, climate change and other factors. Supplying healthy food to all citizens is crucial for global development - to reach it, not only food production but also equitable access to food for all people must be improved substantially. Biodiversity loss and global food security are hence two major challenges of our time.

Linking biodiversity and food security issues from a research perspective, and seeking synergies between them is likely to generate multiple benefits for social, ecological and economic development.

Follow this link to register, submit your abstract and secure your hotel reservations.

Scaling in ecology and biodiversity conservation explained in a book and an online tool

Mon, 04 Aug 2014 18:01:00 +0300

The 5-year EU project Securing the Conservation of biodiversity across Administrative Levels and spatial, temporal, and Ecological Scales (SCALES) has come to an end in July 2014 resulting in a first of its kind description of challenges that arise in protecting biodiversity across different scales.

A wide range of practical methods and recommendations to improve conservation at regional, national and supranational scales are included in a book published as a synthesis of project outcomes. The book "Scaling in Ecology and Biodiversity Conservation" was published in advanced open access via Pensoft Publisher's Advanced Books platform. This innovative format aimed at accelerating data publishing, mining, sharing and reuse, offers a range of semantic enhancements to book contents, including external sources.

Results are also presented in an easy to use interactive SCALETOOL, specifically developed for the needs of policy and decision-makers. The tool also provides access to a range of biodiversity data and driver maps compiled or created in the project.

Human actions, motivated by social and economic driving forces, generate various pressures on biodiversity, such as habitat loss and fragmentation, climate change, land use related disturbance patterns, or species invasions that have an impact on biodiversity.

Each of these factors acts at characteristic scales, and the scales of social and economic demands, of environmental pressures, of biodiversity impacts, of scientific analysis, and of governmental responses do not necessarily match. However, management of the living world will be effective only if we understand how problems and solutions change with scale.

'The book and the tool are the first of their kind and would be of great help to everyone concerned with the conservation of biodiversity. They provide ideas of how to handle complex issues of scaling in applied and theoretical environmental studies' says the chief editor Prof. Klaus Henle.

The book aims to bundle the main results of SCALES in a comprehensive manner and present it in a way that is usable not only for scientists but also for people making decisions in administration, management, policy or even business and NGOs; to people who are more interested in the "practical" side of this issue.

Guidelines, practical solutions and special tools are also presented as a special web based portal, SCALETOOL, which puts together scientific outcomes widely spread over the scientific literature.

###

Original Source:

Henle K, Potts S, Kunin W, Matsinos Y, Simila J, Pantis J, Grobelnik V, Penev L, Settele J (Eds) (2014) Scaling in Ecology and Biodiversity Conservation. Advanced Books: e1169. doi: 10.3897/ab.e1169

The Spiral Project Handbook: Effective interfaces between science, policy and society

Thu, 24 Jul 2014 13:40:00 +0300

The Spiral Project Handbook: Effective interfaces between science, policy and society was developed as part of the SPIRAL project. SPIRAL is an interdisciplinary research project that studies science-policy interfaces between biodiversity research and policy to draw lessons and improve the conservation and sustainable use of biodiversity.

This handbook provides a manual for projects and individuals interested in designing or improving interfaces between science, policy and society. It is challenging – but important – to establish appropriate connections between the diverse insights and perspectives of scientists and other knowledge holders, and the needs and interests of decision-takers, implementers and other knowledge users. These connections and interactions are the "science-policy interface" (SPI). Designing and improving SPIs of EU-funded research projects is the aim of this handbook.

The handbook is structured around five main issues. It starts with a brief introduction to what SPIs are, and what they are not. Then moves on to the issue of why SPIs are needed before looking at certain important attributes of SPIs, namely credibility, relevance, legitimacy and iterativity. In the next part of the handbook, some steps and recommendations for designing, maintaining and improving the SPIs of EUfunded research projects are outlined. As part of this some factors facilitating successful SPIs are discussed.

SPIRAL was funded under the EU 7th Framework Programme, contract number 244035.

Original Source:

Young, J.C., Watt, A.D. van den Hove, S. and the SPIRAL project team1. 2013. Effective interfaces between science, policy and society: the SPIRAL project handbook. http://www.spiralproject.eu/content/documents

The new CETAF website is now launched

Thu, 24 Jul 2014 09:50:00 +0300

The new Consortium of European Taxonomic Facilities (CETAF) website (www.cetaf.org) is now launched.

The new site represents the public face of CETAF, highlighting the consortium, its activities, its achievements and its member institutions as well as giving information on the past and current CETAF initiatives and related projects. The site also gives access to information on the activities and achievements of the current CETAF working commissions, sub-committees and special interest groups (Strategy Group, Digitization Group, European Initiatives Advisory Group, Legislation and Regulations Group, Research Assessment Group, Training and E-Learning Group, Collections Policy Board and the Information Science and Technology Commission).

CETAF is an associated partner of EU BON. It is in the process of developing its 10-year strategic programme that will support the development of taxonomy training and e-learning capacity in Europe; focus on natural history specimen management, access and digitisation activities as well as on issues surrounding the creation, management and accessibility of specimen based biodiversity data, both within and beyond the consortium; and centralizing efforts to support taxonomy and taxonomic research within Europe.

Barbara J. Ryan re-appointed as GEO Secretariat Director

Wed, 16 Jul 2014 10:25:00 +0300

Barbara J. Ryan has been re-appointed, without competition, to a second, three year term as the Secretariat Director of the Group on Earth Observations (GEO). Ryan’s re-appointment was made by unanimous consent of the GEO Executive Committee.

Based in Geneva, GEO is a voluntary partnership of governments and organizations that envisions "a future wherein decisions and actions for the benefit of humankind are informed by coordinated, comprehensive and sustained Earth observations and information. GEO’s initial ten year mandate was extended for another decade by its Ministerial body in January of this year (see: http://www.earthobservations.org/).

GEO’s primary focus is to create a Global Earth Observation System of Systems (GEOSS) to address environmental and societal challenges facing decision leaders and individual citizens across nine essential areas: agriculture, biodiversity, climate, disasters, ecosystems, energy, health, water and weather.

Among the primary objectives objectives of EU BON is the integration of its framework with the Global Earth Biodiversity Observation Network project GEO BON and the Global Earth Observation System of Systems (GEOSS). The aim of GEO BON is to build a monitoring network that presents a full picture of what is happening to biological diversity worldwide.

The system will use masses of biological information with data and forecasts on climate change, pollution, land use, biological invasions and other threats to biodiversity. EU BON aims to facilitate GEO BON's work towards the creation of global biodiversity data network through contributing significant and integrated European capacities, data, and resources.

EU BON announces four new associated partners

Thu, 10 Jul 2014 10:42:00 +0300

EU BON is happy to announce that Memoranda of Understanding have been signed with four new associated partners. The EU BON family is now joined by DataOne (Observation Network for Earth), USA; Fondation pour la Recherche sur la Biodiversité (FRB) / ECOSCOPE, France; Atlas Florae Europaeae (AFE), Finland; and the Natural Environment Centre / SYKE (Finnish Environment Institute), Finland. Welcome to all!

DataOne (Observation Network for Earth)

DataONE is the foundation of new innovative environmental science through a distributed framework and sustainable cyberinfrastructure that meets the needs of science and society for open, persistent, robust, and secure access to well-described and easily discovered Earth observational data.

Fondation pour la Recherche sur la Biodiversité (FRB) / ECOSCOPE

ECOSCOPE is a national network for long-term observation of biodiversity supported by the French Alliance for Research in Environment. ECOSCOPE aims at coordinating and reinforcing biodiversity observatories through specific actions to contribute to national and global efforts 1 / to support research in understanding and anticipating state and changes in biodiversity and associated ecosystem services and 2 / to provide information and synthesis to support decision making. It has been labelled BON in 2012.

Atlas Florae Europaeae (AFE)

Atlas Florae Europaeae (AFE) is a running long-term programme for mapping the distribution of vascular plants in Europe. The project was launched already in 1965 as a collaborative effort of European botanists and since then the Secretariat was established at the Botanical Museum of the Finnish Museum of Natural History, Helsinki.

The original aim of the AFE is to offer complementary maps with taxonomic notes of species and subspecies for the published Flora Europaea.

Natural Environment Centre / SYKE (Finnish Environment Institute)

The Finnish Environment Institute (SYKE) promotes the conservation of biodiversity by various measures, e.g. by assessments of the conservation status of species and natural habitats or by research on methods of management and restoration of habitats. An important field of research is the significance of ecosystem services and their interactions with biodiversity. SYKE's tasks also include finding solutions to problems with invasive species, assessment of the environmental impacts of genetically modified organisms and permits for international trade in endangered species.

EU BON strategy workshop, 3 July 2014

Wed, 09 Jul 2014 10:15:00 +0300

The 3rd of July, an EU BON strategy workshop was held in Cambridge, to further determine the potential value that EU BON could have for both CBD as well as for IPBES. Multiple partners of EU BON discussed with Jerry Harrison of the WCMC, active expert of CBD and IPBES, and Matt Walpole, on the actual needs of both policy instruments, what EU BON can contribute and how its contributions can be most successful. Based on the hard work performed during the day, several general recommendations and a list with 7 focal actions was developed. The general recommendations to increase the visibility and credibility of EU BON outputs, also for the period after the project has ended, and are relevant for all outputs and events organised by EU BON;

- the explicit inclusion of non-European colleagues and data – to demonstrate the added value of EU BON also outside the European context

- searching actively to collaborate with other existing institutes like GEO BON and LTER – to demonstrate the longlivity of EU BON outputs

- and publishing early on successful data integration demonstration cases – to demonstrate the scientific rigour and possibilities.

The workshop was organised by CBRS and hosted by WCMC, just in time to start preparing for IPBES 3 which will be organised 12-17 January 2015 in Bonn.

Participants were: Jerry Harrison, Matt Walpole, Eurgenie Regan, Corinne Martin, Cristina Secades, Annabel Crowther, Anke Hoffman, Florian Wetzel, Dirk Schmeller, Neill Brummit, Andrew McConville, Rob Doubleday and Ilse Geijzendorffer.

Launch of the IPBES secretariat in Bonn

Tue, 08 Jul 2014 20:49:00 +0300

An international push to protect global biodiversity organized by the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES) is launched tonight (08/07/2014) in Bonn, Germany, where EU BON will be represented at the event by the project co-ordinatior Christoph Häuser.

IPBES was established in April 2012, as an independent intergovernmental body open to all member countries of the United Nations. The members are committed to building IPBES as the leading intergovernmental body for assessing the state of the planet's biodiversity, its ecosystems and the essential services they provide to society.

8th GEO European Projects Workshop (GEPW-8): Presentations and photgraphs are now available

Tue, 08 Jul 2014 16:02:00 +0300

The 8th GEO European Projects Workshop (GEPW-8) took place in Athens, Greece, on 12 and 13 June, hosted by the Greek GEO Office - National Observatory of Athens and co-organized by the Mariolopoulos-Kanaginis Foundation for the Environmental Sciences.

The event was intended to bring all those interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS) from all over Europe together, in order to present their work and discuss how Europe can contribute to this international effort, especially in the wake of the launch of the new EU Framework Programme for Research, Horizon 2020, and renewal of the mandate of GEO for another 10 years through the endorsement of the 2014 Geneva Declaration.

Oral presentations, a book of abstracts and the photos from the event are now uploaded and available for download on the events website.

Memorandum of Understanding signed between EU BON and BioVeL

Wed, 25 Jun 2014 09:55:00 +0300

A memorandum of understanding has been signed between EU BON and BioVeL (Biodiversity Virtual e-Laboratory Project). The document was signed by the BioVeL coordinator Alex Hardisty (Cardiff University, UK) and handed over to Alexander Kroupa (Museum für Naturkunde Berlin, Germany), who was there on behalf of the EU BON consortium, during the SPNHC Conference in Cardiff, 22-27 June 2014.

BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL offers the possibility to use computerized "workflows" (series of data analysis steps) to process data, be that from one's own research and/or from existing sources.

Meanwhile the list of MoU signed by EU BON has grown with further institutions/projects joining: http://www.eubon.eu/showpage.php?storyid=10373

European Space Agency's call for proposals: Data User Element INNOVATOR

Mon, 23 Jun 2014 10:38:00 +0300

European Space Agency (ESA) has released its call for proposals for the next projects in the Data User Element (DUE) INNOVATOR arena. Projects are expected to contributed to various international efforts, and CliC and the Cryosphere in a Changing Climate Grand Challenge are specifically mentioned. We encourage those of you interested in submitting a proposal to consider tying your efforts to some of the ongoing and developing CliC activities.

The full call for proposals can be downloaded here.

The DUE INNOVATOR III will consist in a suite of up to 12 projects of maximum two year time duration and of value up to 200 K euro each. The DUE INNOVATOR III projects will give to the end-users, industry and research communities the opportunity to develop and demonstrate innovative Earth Observation (EO) services and products using existing ESA, ESA third-party mission and other EO datasets. These original projects, if successful, may constitute future large scale activities within the Agency's Data User Element (DUE) programme.

The DUE INNOVATOR III application areas and service themes are open, but require a targeted end-user community that will directly benefit from these new services and products. At least one end-user entity shall be actively involved in each DUE INNOVATOR III project and will be responsible for providing the detailed service and product requirements, as well as support the interpretation and validation of the service products, and assess the adequacy of and benefits of the service.

Each project will be carried out up to 24 months and will consist of three phases: - Specification and demonstration; - Implementation and validation; - Evaluation and evolution scenario. EO topics already covered by past or ongoing projects within the ESA DUP/DUE, EOMD, GSE, EU Framework Programmes or National programmes will not be considered for funding. Spanish Tenderers are advised that although Spain is participating in EOEP-4, its contribution is already earmarked for specific elements in EOEP-4 aiming at ensuring continuity with activities stemming from the previous period. Therefore, for this ITT, entities which have their registered office in Spain are not entitled to take part in a bidding consortium, either as Prime Contract or as subcontractor.

Postdoctoral position on Biological Invasions at Doñana Biological Station (Spain)

Mon, 23 Jun 2014 09:41:00 +0300

EBD-CSIC is interested to examine the multifaceted causes and consequences of biological invasions, a key component of global change. The ultimate goal is to improve our knowledge of the factors that influence the success and impacts of invasions by plants and vertebrates. For this purpose, we investigate species traits conferring invasive potential, the vulnerability of ecosystems to be invaded, and the sensitivity of native biodiversity to invasions under different environmental conditions and scenarios of global change.

Deadline for interested applicants: 17th June-17th July, 2014

Please see attached file for more details (download, pdf)

Distributed European School of Taxonomy (DEST) approaching training courses

Thu, 19 Jun 2014 13:28:00 +0300

The Distributed European School of Taxonomy (DEST) has been established by prominent taxonomists and other international partners during the EU funded project European Distributed Institute of Taxonomy (EDIT). The major aim of DEST is to transfer knowledge between current and future generations of taxonomists by providing high quality education and prepare students for future taxonomic careers.

Overall, DEST involves a network of around 100 training providers from 60 institutions. Within the framework of the EDIT project, DEST organised training sessions in 30 European institutions for 185 students from all over the world (116 of which EDIT-granted). Since March 2011, the Royal Belgian Institute of Natural Sciences remains responsible for the continued management of DEST, organization of courses and related logistical matters. During the academic year 2011-2012, DEST provided training to 100 students through 16 courses, while 130 students participated in 19 training courses during 2012-2013.

DEST continues to provide high-quality training to future taxonomists. Below are the deadline for registration for several approaching courses in Modern Taxonomy:

Philosophy of Biological Systematics (8-12 September 2014)
Course venue: Royal Belgian Institute of Natural Sciences, Brussels, Belgium
Training provider: Dr. Kirk Fitzhugh, Natural History Museum of Los Angeles County, U.S.A.
Registration deadline is being extended untilFriday 20 June 2014

Zoological Nomenclature training course (22-26 September 2014)
Course venue: Muséum national d'Histoire naturelle, Paris, Franc
Training provider: Prof. Alain Dubois, Muséum national d'Histoire naturelle, Paris
Registration deadline is being extended untilFriday 20 June 2014

Botanical Nomenclature training course (26-30 January 2015)
Course venue: Royal Botanic Gardens Kew, U.K.
Training provider: Katherine Challis, Royal Botanic Gardens, Kew
Registration deadline: 10 October 2014

To read more about the courses and to register, visit the official DEST webpage: http://www.taxonomytraining.eu/content/modern-taxonomy-course-programme-2013-2014

Four new data papers on species traits!

Wed, 18 Jun 2014 15:55:00 +0300

Four papers on species traits have been recently published in ZooKeys, Ecology and Ecology, Evolution and the Biodiversity Data Journal respectivelly covering data on the butterflies in Europe, birds and mammals of the world, the terrestrial mammals of the world and marine polychaetes.

Schweiger O, Harpke A, Wiemers M, Settele J (2014) CLIMBER: Climatic niche characteristics of the butterflies in Europe. ZooKeys 367: 65–84. doi: 10.3897/zookeys.367.6185 Resource ID: GBIF key: http://www.gbif.org/dataset/e2bcea8c-dfea-475e-a4ae-af282b4ea1c5

Hamish Wilman, Jonathan Belmaker, Jennifer Simpson, Carolina de la Rosa, Marcelo M. Rivadeneira, and Walter Jetz. 2014. EltonTraits 1.0: Species-level foraging attributes of the world's birds and mammals. Ecology 95:2027. http://dx.doi.org/10.1890/13-1917.1

Kissling, W. D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel, B., Sandom, C., Trøjelsgaard, K. and Svenning, J.-C. (2014), Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution. doi: 10.1002/ece3.1136

Faulwetter S, Markantonatou V, Pavloudi C, Papageorgiou N, Keklikoglou K, Chatzinikolaou E, Pafilis E, Chatzigeorgiou G, Vasileiadou K, Dailianis T, Fanini L, Koulouri P, Arvanitidis C (2014) Polytraits: A database on biological traits of marine polychaetes. Biodiversity Data Journal 2: e1024. DOI: 10.3897/BDJ.2.e1024

June 2014 Updates of FishBase and SeaLifeBase

Tue, 17 Jun 2014 13:09:53 +0300

The June 2014 updates of FishBase and SeaLifeBase are now available online!

FishBase: www.fishbase.us; www.fishbase.ca

FishBase stats to date: 32800 Species, 303100 Common names, 53900 Pictures,
50200 References, 2110 Collaborators, 700000 Visits/Month

SeaLifeBase: www.sealifebase.ca

DataONE meets EU BON

Mon, 16 Jun 2014 10:06:00 +0300

At the Open Repositories Conference (June 9-13 2014) in Helsinki, Finland, a DataONE Member Node Implementation Workshop was held, which was particularly joined by EU BON partners. This one day meeting (9 June) outlined the concept of DataONE, which is the Data Observation Network for Earth project (DataONE). In a series of talks, the benefits of adopting a solid data management cycle and collaboration were explained. Different ways were shown how biodiversity projects or networks can collaborate and it was demonstrated how to use the DataONE web services to access content from client applications.

Several EU BON partners of different work packages and associated partners joined the workshop and engaged in the discussion to find ways how the EU BON project and its data could be linked to the DataONE Infrastructure. As DataONE also builds a network of integrating biodiversity datasets from various sources and locations and already developed a workable technological infrastructure, further collaboration and the implementation of an exchange of biodiversity information is foreseen.

The workshop was followed by an EU BON specific internal meeting, chaired by Hannu Saarenmaa from UEF and hosted by Liisa Tuominen-Roto from the Finnish Environment Institute (SYKE). At this meeting it was further elaborated how the information obtained in the previous day could be translated into concrete next steps. Also further aims of EU BON and its work on a portal were discussed with the project partners, to further develop the plans of EU BON’s data integration and interoperability.

Picture: Participants of the Workshop (from UEF, CSIC, MRAC, GlueCAD, HCMR, MfN, Univ. Granada, SYKE) and members of DataONE after the first day meeting, Helsinki, Finland.

DINA Technical Workshop - Alpha version of mobilization system

Fri, 13 Jun 2014 13:16:09 +0300

Target group: programmers, developers and system engineers. The workshop is open to anybody who might be interested to learn more about the DINA-system.

Preliminary agenda:

Presentations from all DINA-partners
APIs, service oriented architecture and road map for distributed development, guidelines and principles on how to build a module and join the DINA-system
Case studies
Delivery options: creating installations from hosted environment, virtual machines down to code.

A detailed program will be available by the end of August 2014.

There will be a SETF-meeting for DINA consortium members on the 15th of September.

Welcome to register for the workshop here:

DINA - Technical Workshop 16-18 September, Stockholm

The workshop is an activity within WP 1 Task 1.4

Surface Temperatures at the Continental Scale: Tracking Changes with Remote Sensing at Unprecedented Detail

Fri, 13 Jun 2014 10:09:00 +0300

Temperature is a main driver for most ecological processes, and temperature time series provide key environmental indicators for various applications and research fields. High spatial and temporal resolutions are crucial for detailed analyses in various fields of research. A disadvantage of temperature data obtained by satellites is the occurrence of gaps that must be reconstructed. Here, we present a new method to reconstruct high-resolution land surface temperature (LST) time series at the continental scale gaining 250-m spatial resolution and four daily values per pixel. Our method constitutes a unique new combination of weighted temporal averaging with statistical modeling and spatial interpolation. This newly developed reconstruction method has been applied to greater Europe, resulting in complete daily coverage for eleven years. To our knowledge, this new reconstructed LST time series exceeds the level of detail of comparable reconstructed LST datasets by several orders of magnitude. Studies on emerging diseases, parasite risk assessment and temperature anomalies can now be performed on the continental scale, maintaining high spatial and temporal detail. We illustrate a series of applications in this paper. Our dataset is available online for download as time aggregated derivatives for direct usage in GIS-based applications (Reconstructed MODIS Land Surface Temperature Dataset - http://gis.cri.fmach.it/eurolst/).

Source: Metz M, Rocchini D, Neteler M. (2014) Surface Temperatures at the Continental Scale: Tracking Changes with Remote Sensing at Unprecedented Detail.Remote Sensing 6(5): 3822-3840. doi: 10.3390/rs6053822

The Bouchout Declaration: A commitment to open science for better management of nature

Thu, 12 Jun 2014 17:11:00 +0300

The Bouchout Declaration targets the need for data to be openly accessible, so that scientists can use the information for new types of research and to provide better advice. Currently, data may be prevented from becoming open or usable because of copyright оr concerns of institutions that hold the data, or because it is not in a form that can be easily managed by computers. The Declaration identifies mechanisms to structure open data so that they can be drawn together, queried and analysed on a much larger scale than was previously possible.

The Bouchout Declaration allows the community to demonstrate its support for data to be openly available. It extends previous efforts, like the Berlin Declaration, to the biodiversity sciences. The objective is to promote free and open access to data and information about biodiversity by people and computers. This will help to bring about an inclusive and shared knowledge management infrastructure that will inform our decisions so that we respond more effectively to the challenges of the present and future.

"Biodiversity research is painstakingly built up from the study of billions of specimens over hundreds of years from every region of the Earth. We are now in a position to share this hard-won knowledge freely with everyone who wishes to read, extend, interconnect, or apply it. We should do so as soon as humanly possible. If we do, we will not only make biodiversity research more accessible, discoverable, retrievable, and useful. We will make it more useful for the critical purpose of preserving biodiversity itself," comments Peter Suber from the Harvard Open Access Project on the significance of the declaration.

International initiatives like the Global Biodiversity Information Facility (GBIF) support science and society by gathering and helping scientists to analyse knowledge acquired by past generations and from streams new observations and technologies. The GBIF's Executive Secretary Donald Hobern commented: "This knowledge cannot be recreated and needs to be used and reinterpreted over time. We need to manage it as a precious resource of value to the whole human race. This is why Open Biodiversity Knowledge Management matters."

The Bouchout Declaration emerged from the pro-iBiosphere project (a Coordination and Support Action funded through the European Union's Seventh Framework Programme (FP7/2007-2013) under Grant Agreement №312848 ) as a reaction to the need of better access to biodiversity information. The inaugural ceremony of the Bouchout Declaration (including official launch of the website) will take place on the 12th of June 2014 during the final event of the project.

"Museum collections around the world hold invaluable biodiversity information that are often hidden in dark rooms. Digitalizing and providing free and open access to these resources through an Open Biodiversity Knowledge Management System in Europe is crucial for the advancement of biodiversity research and better management of nature for a sustainable future. We are happy to be one of the first institutions which endorsed the Declaration" concluded Prof. Johannes Vogel, Director General of the Museum für Naturkunde, Berlin.

Universities, research institutions, funding agencies, foundations, publishers, libraries, museums, archives, learned societies, professional associations and individuals who share the vision of the Bouchout Declaration are invited to join the signatories. If you wish to join the list of signatories or would like to receive additional information please email bouchout@plazi.org.

Among the initial signatories are some of the world's leading natural history museums, botanical gardens, and scientific networks.

Environment: Commission launches new platform to help resolve social conflicts over large carnivores

Wed, 11 Jun 2014 15:54:00 +0300

Europe's brown bear, wolf, wolverine, lynx – at least one of these species can now be found in 21 EU Member States. After a lengthy period of decline their numbers are growing once more, but coexistence with man can be problematic. In an effort to solve the social and economic problems that sometimes result from this new expansion, the European Commission has launched a platform where farmers, conservationists, hunters, landowners and scientists can exchange ideas and best practices on sharing the same land with large carnivores.

The EU Platform on Coexistence between People and Large Carnivores will support constructive dialogue between key stakeholder organisations at the European level. Launching the platform, EU Environment Commissioner Janez Potočnik said: "We need to treat our natural neighbours with respect – but we also need to heed the concerns of those whose lives are genuinely affected by their close proximity. My warm congratulations to the organisations that have worked together to set up this important platform, which represents a major step forward in efforts to address the issue of peaceful coexistence."

The European Union is home to five species of large carnivores. All suffered dramatic declines in numbers and distribution as a consequence of human activity, but increasing protection and public awareness about their vital role in healthy ecosystems have caused many populations to stabilize or increase, and to return to areas from which they had been absent for decades or even centuries.

While this recovery is seen by some as a great conservation success, it has not been without its opponents. The issue involves a diversity of stakeholders such as hunters, foresters, livestock producers, reindeer herders, landowners, rural communities, conservation organizations and the wider public. These groups are influenced by and perceive large carnivores in different ways, and in some cases these differences can be a source of conflict. The platform will facilitate exchanges of knowledge and promote ways and means to minimize, and wherever possible, find equitable solutions to these conflicts.

The platform launched today follows a number of efforts to understand the conflicts between stakeholders over large carnivores, the results of which were set out in workshops conclusions and in a report.

Next steps

The Platform will hold its first working session immediately following the official launch today, on 10 June. It will adopt terms of reference and a work plan. The Platform will hold one annual meeting and organize additional workshops on selected topics. It will be supported by a web-based resource centre that will serve as the main tool to disseminate information on the activities of the platform, identify good practices in the form of documents or a manual, act as a gateway to the portals of the member organisations, and host media resources such as press kits for journalists.

For more information:

Original press release: http://europa.eu/rapid/press-release_IP-14-648_en.htm

Visit the large carnivore website of DG Environment at http://ec.europa.eu/environment/nature/conservation/species/carnivores/index_en.htm

http://ec.europa.eu/environment/nature/index_en.htm

The signing ceremony and moderated panel discussion is streamed (https://new.livestream.com/corlive1/events/2977474/embed) on the internet (also see http://ec.europa.eu/environment/nature/conservation/species/carnivores/index_en.htm)

Classical monographs re-published in advanced open access

Wed, 11 Jun 2014 15:51:00 +0300

The new Advanced Books platform of Pensoft opens new horizons for semantic book publishing

Easy access to legacy data collected over hundreds-of-years of exploration of nature from the convenience of people's own computers for anyone all over the world? It may sound futuristic but a brand new pilot showcases how this is possible here and now.

The new workflow demonstrates a re-publication of a volume of Flora Malesiana in a semantically enriched HTML edition available on the newly launched, Advanced Books publishing platform. The platform was demonstrated today at the EU funded pro-iBiosphere project which supported, in part, the re-publication of Flora Malesiana.

When Linnaeus was laying the foundations of taxonomy as a science in his Species Plantarum and Systema Naturae books he probably did not imagine that his methods of publication of natural history data would remain almost unchanged for more than 270 years! The bulk of the information on the living World is still closed in paper-based legacy literature, especially in fundamental regional treatises such as Flora, Fauna and Mycota series, hardly accessible for readers, despite the dramatic changes in the publishing technologies that have taken place over the last decade.

The new pilot, developed by Pensoft Publishers in a cooperation with the Naturalis Biodiversity Center, Plazi, and Botanischer Garten und Botanisches Museum Berlin-Dahlem (BGBM), demonstrates how a fundamental book in natural history can start a new life with Advanced Books. Re-publication of the Flora of Northumberland & Durham, published in 1838, will be the next to appear as a result of a collaboration between the Botanical Garden Meise National Botanic Garden of Belgium and Pensoft.

Flora Malesiana is a systematic account of the flora of Malesia, the plant-geographical unit spanning six countries in Southeast Asia: Indonesia, Malaysia, Singapore, Brunei Darussalam, the Philippines, and Papua New Guinea. The plant treatments are not published in a systematic order but as they come about by the scientific efforts of some 100 collaborators all over the world.

With the new platform, such scientifically important historical monographs, enriched with additional information from up-to-date external sources related to organisms' names, species treatments, information on their ecology, distribution and conservation value, morphological characters, etc., become freely usable for anyone at any place in the world.

The re-publication in advanced open access comes with the many other benefits of the digitization and markup efforts such as data extraction and collation, distribution and re-use of content, archiving of different data elements in relevant repositories and so on.

"Advanced Books will bring many outstanding scientific monographs to a new life, however the platform is not only restricted to e-publish our legacy literature." commented Prof. Lyubomir Penev, Managing Director of Pensoft. "New books are mostly welcome on the platform, joining their historical predecessors in an open, common, human- and machine-readable, data space for the benefit of future researchers and the society in general" concluded Prof. Penev.

Original Source:

de Wilde W (2014) Flora Malesiana. Series I - Seed Plants, Volume 14. Myristicaceae. Advanced Books: e1141. doi: 10.3897/ab.e1141

Memorandum of understanding signed between EU BON and CETAF (Consortium of European Taxonomic Facilities)

Wed, 04 Jun 2014 14:49:00 +0300

A memorandum of understanding has been signed between EU BON and CETAF (Consortium of European Taxonomic Facilities, AISBL). The document was signed by EU BON project coordinator Christoph Häuser and the Chair of CETAF, Dr. Michelle J. Price, during the 35th CETAF General Meeting in Oslo, 6-7 May, 2014.

CETAF is a networked consortium of scientific institutions in Europe formed to promote training, research and understanding of systematic biology and palaeobiology, Together, CETAF institutions hold very substantial biological (zoological and botanical), palaeobiological, and geological collections and provide the resources necessary for the work of thousands of researchers in a variety of scientific disciplines.

Meanwhile the list of MoU signed by EU BON has grown with further institutions/projects joining: http://www.eubon.eu/showpage.php?storyid=10373

Symposium (22-23 May): Remote Sensing for Conservation, London, UK

Wed, 04 Jun 2014 14:12:00 +0300

On 22^nd and 23^rd of May a symposium entitled "Remote sensing for conservation: uses, perspectives and challenges" took place at the Zoological Society of London (ZSL). The organisers successfully aimed at linking specialists from the two fields, remote sensing and conservation, more tightly. The two days provided a great overview of current activities of joint approaches and glimpses of what might be possible in the near future. In the following, a short subjective overview of the highlights is given with relevance to EU BON.

The first day started with the welcoming notes by the ZSL and the news that a new journal, which is especially created for the interplay between remote sensing and conservation, will be published soon. Woody Turner (NASA) gave a fabulous keynote with examples of current state of the art studies, such as using drones and off the shelf cameras to get cheap custom designed aerial images, the impressive combination of radar data with hyperspectral bands which lead to a 3D image of forest biodiversity and the emerging use of bioacoustics to monitor biodiversity. Nathalie Pettorelli (ZSL) gave an introduction into NDVI (Normalized Differenced Vegetation Index) and an overview of its usefulness for conservation. Martin Wegmann (University of Würzburg, DLR) showed the usefulness of a variety of fragmentation indices. Thomas Esch (DLR) showed the current status of the upcoming global urban footprint. Diane Davies (NASA) listed and compared a number of sources which monitored fires on a regional and global scale. Frank Muller-Karger (University of South Florida) elaborated on his enormous efforts to create global "seascapes" comparable to landscapes or ecoregions and his ultimate goal, a global marine biodiversity observation network (mbon). Temilola Fatoyinbo (NASA) explained the efforts towards a comprehensive global assessment of mangroves. Peter Reinartz (DLR) tested whether space born animal tracking is possible, and it will be.

On the second day Thomas Nauss (University of Marburg) started by delving into LiDAR (light detection and ranging; meaning the use of an active sensor measuring the reflectance of short laser pulses), derived not only from aerial flights but also from on-ground measurements. Kamran Safi (MPI Radolfzell) presented the awesome analysis of movement ecology and the incorporation in conservation. Graeme Buchanan (RSPB) presented nice examples of successful predictive ENMs (environmental niche models). Carlo Rondinini (University of Rome) tested the role of protected areas for large mammals in Africa. Andrew Skidmore (University of Twente) called for a need for more fine grained data and the inclusion of a more agricultural centred perspective because of a large percentage of the land surface is under agricultural use. Edward Mitchard (University of Edinburgh) showed exemplarily a study of REDD+ (revised programme of Reducing Emissions from Deforestation and Degradation) in Indonesia. Gregoire Dubois (EC-JRC) presented the current state and future steps of DOPA (Digital Observatory for Protected Areas). Robert Rose (WCS) gave an insight into the joint platform for remote sensing and conservationists (CRSNet) and the top 10 conservation questions derived from a joint project. Finally Mike Gill (Environment Canada) illuminated the GEO BON mission and Christina Secades (WCMC) gave some details of her report on the usefulness of remote sensing for the Aichi targets.

Posters were exhibited as well. EU BON presented its remote sensing approaches and Palma Blonda (CNR-ISSIA) the BIO_SOS project. Two poster highlights were the announcement of a "temporal human impact index" by Jonas Geldmann (University of Copenhagen) and the "Biodiversity Indicators Dashboard", a facilitated interpretation of biodiversity indicators using the Tropical Andes, the African Great Lakes, and the Mekong Basin as examples (http://www.natureserve.org/conservation-tools/projects/biodiversity-indicators-dashboard).

Please lind attached below the a list of the projects and articles (with links) which were mentioned during the talks and which I found interesting (in no particular order or relevance!)

Biodiversity and Food Security – From Trade-offs to Synergies

Thu, 29 May 2014 09:54:00 +0300

3^rd International Conference on Biodiversity and the UN Millennium Development Goals - October 29-31, 2014, Aix-en-Provence, France

This international conference is the third in a series, organized by the French CNRSInstitut Ecologie et Environnement (InEE) and the German Leibniz Association (WGL).

The goal is to identify science-based solutions for global sustainability focusing on the issues of biodiversity and food security. Current ecological, economic and societal challenges for development require a holistic understanding of food security and environmental management: from this perspective, biodiversity can be seen as key to overcome trade-offs and to develop synergies between the food system and the conservation of landscapes, ecosystems, and species. The conference seeks to attract scientists from basic and applied research. It involves policy makers and other stakeholders concerned with biodiversity and food security themes who are interested in developing new solutions and strategies. It will connect researchers and stakeholders from natural sciences, social sciences, economics, humanities, technology and related fields.

UN's message on the International day for biological diversity

Thu, 22 May 2014 15:24:00 +0300

This year’s International Day for Biological Diversity falls in the International Year of Small Island Developing States and is being observed under the theme of "Island Diversity".

For some 600 million island-dwellers -- nearly one-tenth of the world’s population and representing one in three United Nations Member States -- biodiversity is integral to their subsistence, income, well-being and cultural identity.

Half the world’s marine resources lie in island waters. Biodiversity-based industries such as tourism and fisheries account for more than half the gross domestic product of small island developing states. Coral reefs alone provide an estimated $375 billion annual return in goods and services. Many island species on land and sea are found nowhere else on Earth. Legacies of a unique evolutionary heritage, they hold the promise of future discoveries -- from medicines and foods to biofuels.

Yet, reflecting a global pattern, island biodiversity is being lost at an unprecedented rate in the face of growing risks. Rising sea levels caused by climate change, ocean acidification, invasive alien species, overfishing, pollution and ill-considered development are taking a heavy toll. Many species face the prospect of extinction. People’s livelihoods and national economies are suffering.

The process to define a post-2015 development agenda and the Third Conference on Small Island Developing States in Samoa in September of this year both offer opportunities to attend to the unique needs of small island developing states and reverse the global decline in biodiversity. Because of their vulnerability, small island developing states are demonstrating a growing understanding of the links between healthy ecosystems and human well-being. Many have made local, national and regional commitments to conserve and sustainably use biodiversity, including through ratifying important instruments such as the Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization. I call on all countries around the world to follow suit and ratify the Protocol without delay.

Around the world, many innovative partnerships are being forged to preserve marine and coastal resources, enhance resilience to climate change and develop sustainable tourism, fisheries and other industries. On this International Day, let us commit to adopting, adapting and scaling up best practices so we can protect fragile ecosystems for the benefit of all the islanders -- and indeed people everywhere -- who depend on them.

Introduction to the GEOSS Common Infrastructure (GCI)

Wed, 21 May 2014 16:01:00 +0300

The GEOSS Architecture Implementation Pilot (AIP) develops and deploys new process and infrastructure components for the GEOSS Common Infrastructure (GCI) and the broader GEOSS architecture.

To present the GCI an "Introduction to the GEOSS Common Infrastructure (GCI)" virtual workshop will be held today 21 May 2013 at 14:00 UTC.

Agenda: In this 1 hour session we will take a "Tour of the GCI - everything you wanted to know about GCI" from a user perspective (outside view of the GCI; what is the goal of the GCI, what are ‘resources', Data-CORE and much more ...) (this includes a demo of the GeoPortal) and technical perspective (inside view the GCI; architecture and interfaces). We estimate a kif-kif split between user and technical perspective (don’t worry if you are not a propeller-head, the technical view will give you additional insight).

GEOSS speakers are (in alphabetical order): Doug Nebert (USGS), Guido Colangeli (ESA), Mattia Santoro (CNR), Steve Browdy (IEEE).

Intended audience:

- if you are new to GEOSS or AIP

- knew GEOSS or AIP from a while back and need a refresher

- in need for a general refresher

- general interest in GEOSS (but not a participant in AIP)

Virtual meeting details: https://www4.gotomeeting.com/join/628333311

Group on Earth Observations Launches Worldwide Competition ‘Aim is to Turn Data into Decisions’

Thu, 15 May 2014 14:11:00 +0300

The Group on Earth Observations (GEO) just launched the GEO Appathon 2014, a global competition to develop mobile "apps" to help people make smarter decisions about the environment. (www.geoappathon.org) Competitors from more than 15 countries – and growing – are competing for $20,000 in prizes being offered by the U.S. Agency for International Development (USAID).

GEO is a voluntary partnership of governments and organizations that envisions "a future wherein decisions and actions for the benefit of humankind are informed by coordinated, comprehensive and sustained Earth observations and information." GEO membership includes 89 nations and the European Commission, and 77 Participating Organizations comprised of international bodies with a mandate in Earth observations.

GEO Appathon 2014 is designed to create new, exciting and easy-to-use Apps using Earth observation data available through GEO’s Global Earth Observation System of Systems (GEOSS). GEOSS is a unique, web-based clearinghouse that provides access to more than 65 million data records from archives spread across the globe. (www.geoportal.org)

"GEO Appathon 2014 is one of the critical next steps in the evolution of GEOSS to create mechanisms to readily convert data into information and tools for decision makers across society," stated Barbara J. Ryan, Secretariat Director of GEO. "The Appathon is an important leap forward in unleashing the power of Earth observations."

Apps will focus on addressing environmental and societal challenges facing decision leaders and individual citizens in developing countries across nine essential areas: agriculture, biodiversity, climate, disasters, ecosystems, energy, health, water and weather.

"Access to better information, in the hands of people who can use it every day, is a major step forward. This appathon goes beyond the open data movement. The aim is to turn data into decisions," said Carrie Stokes, Director of USAID’s GeoCenter.

In addition to USAID, partners in the GEO Appathon include Esri, European Space Agency, Geospatial Media, GISCloud, Microsoft, National Research Council of Italy, and Open Geospatial Consortium.

Participation in the GEO Appathon is open to any non-commercial entity, individual or team from any background in any country. Apps can be created for any of the main operating systems, as well as open source platforms, and can be designed for any type of portable device. All Apps will be judged and the top winners will receive a cash prize and a year-long GEO network endorsement and publicity for the App. Registration for the GEO
Appathon remains open through July 31st. Qualifying Apps must be received by August 31, 2 014.

Satellite remote sensing, biodiversity research and conservation of the future

Tue, 29 Apr 2014 09:32:00 +0300

Philosophical Transactions of the Royal Society B (2014) doi: 10.1098/rstb.2013.0190

Assessing and predicting ecosystem responses to global environmental change and its impacts on human well-being are high priority targets for the scientific community. The potential for synergies between remote sensing science and ecology, especially satellite remote sensing and conservation biology, has been highlighted by many in the past. Yet, the two research communities have only recently begun to coordinate their agendas. Such synchronization is the key to improving the potential for satellite data effectively to support future environmental management decision-making processes. With this themed issue, we aim to illustrate how integrating remote sensing into ecological research promotes a better understanding of the mechanisms shaping current changes in biodiversity patterns and improves conservation efforts. Added benefits include fostering innovation, generating new research directions in both disciplines and the development of new satellite remote sensing products.

New version of Euro+Med Plantbase

Thu, 17 Apr 2014 15:48:00 +0300

A new updated version of Euro+Med Plantbase was made available online in the middle of April 2014. For the first time, the economically important gymnosperms (coniferous trees), and the genus Thalictrum, as the first part of the large Ranunculaceae family, are treated in Euro+Med Plantbase.

Euro+Med Plantbase integrates and critically evaluates information from Flora Europaea, Med-Checklist, the Flora of Macaronesia, and from regional and national floras and checklists from the area as well as additional taxonomic and floristic literature. This is complemented by the European taxa of several families taken from the World Checklist of Selected Plant Families and of the Leguminosae from the International Legume Database and Information Service ILDIS. By April 2014 it provides access to 187 plant families, corresponding to ca. 92 % of the European flora of vascular plants.

The Euro+Med Plantbase web portal is accessible at http://ww2.bgbm.org/EuroPlusMed/.

Web services for Euro+Med merged with Fauna Europaea, ERMS, and Index Fungorum are provided by VLIZ at http://www.eu-nomen.eu/portal/webservices.php. The services will be also registered for use in EU BON in summer 2014.

Job Alert: PhD Position in Visualization of Biodiversity Data

Thu, 17 Apr 2014 15:18:00 +0300

The Heinz-Nixdorf-Chair for Distributed Information Systems at the Friedrich Schiller University of Jena (Germany) invites applications for a fully funded PhD student position in Biodiversity Data Visualization for the data management project of the Biodiversity Exploratories (BE) Priority Program.

Deadline for application: 2nd, May 2014

Start date: June 2014 or later

What this is about

The data management project provides the platform for data storage and information exchange for the projects of the DFG Priority Program "Biodiversity Exploratories". Examples of the thematic focus of the projects include botany, forestry, soil, animal, fluxes, modeling, and remote sensing. This diversity is reflected in the format, structure, and semantics of their data which we manage.

Tasks in this project will be centered on the investigation and development of novel visualization methods and user-friendly tools for exploration, search and discovery, quality assurance and integration of the heterogeneous, large volume biodiversity data. Overall, the study should contribute to the science of visualization for big-data-driven biodiversity research.

More information on the requirements, conditions and how to apply find in the official job offer attached below.

FISHBASE APRIL 2014 MIRROR UPDATES

Tue, 15 Apr 2014 06:46:52 +0300

The April 2014 mirror updates of FishBase (www.fishbase.ca and www.fishbase.us); are now available online.

FishBase stats to date: ( 32800 Species, 303100 Common names, 53900 Pictures,
50200 References, 2110 Collaborators, 700000 Visits/Month )

EU BON General Meeting and latest paper: Improved access to integrated biodiversity data for science, practice, and policy

Tue, 08 Apr 2014 16:24:00 +0300

The "Building the European Biodiversity Observation Network" EU BON General Meeting took place between 30 March - 3 April 2014 in Heraklion on Crete, to present major project results and set objectives for the future. The meeting was preceeded by a review paper recently published in the open access journal Nature Conservation, to point out EU BON researchh interests and objectives for the future of biodiversity protection.

This is a group photo of the participants in the recent EU BON General Meeting in Crete, Greece.

The 2014 General Meeting brought together keynote speakers Jörg Freyhof (GEO BON, Executive Director), Marc Paganini (European Space Agency), Jerry Harrison (UNEP-WCMC) with the entire EU BON consortium to discuss collaborations between the project and other important initiatives in the areas of earth observation, particularly in remote sensing and in situ approaches to biodiversity data collection, as well as in the use and analysis of biodiversity data for forecasting and scenario building, and environmental policy.

"The high potential for satellite Earth Observations to support biodiversity monitoring is growing but is yet to be fully realised. The recent efforts of GEO BON, supported by the GEO Plenary and the CBD Conference of the Parties, to define a set of minimum essential observational requirements to monitor biodiversity trends will give considerable impetus for space agencies and for the remote sensing community to focus their work on a small set of well defined earth observations products that will serve the needs of the biodiversity community at large. In that context ESA is firmly engaged in supporting the development of these emerging Essential Biodiversity Variables (EBVs). EU BON together with ESA can be pioneers in the early development and demonstration." comments Marc Paganini, European Space Agency, on the future collaboration between the two initiatives.

The world's biodiversity is in an ongoing dramatic decline that despite conservation efforts remains unprecedented in its speed and predicted effects on global ecosystem functioning and services. The lack of available integrated biodiversity information for decisions in sectors other than nature conservation has been recognized as a main obstacle and the need to provide readily accessible data to support political decisions has been integrated into the CBD's "Strategic Plan for Biodiversity 2011–2020" and the Aichi targets. The recently published EU BON review paper points out how the project will use its potential to improve the interaction between citizens, science and policy for a better future of biodiversity protection.

EU BON aims to enable decision makers at various levels to make use of integrated and relevant biodiversity information adapted to their specific requirements and scales. Disparate and unconnected databases and online information sources will be integrated to allow improved monitoring and evaluation of biodiversity and measures planned or taken at different spatial and temporal scales. This requires strong efforts not only with regard to technical harmonization between databases, models, and visualization tools, but also to improve the dialogue between scientific, political, and social networks, spanning across several scientific disciplines as well as a variety of civil science organizations and stakeholder groups.

The project is focusing mainly on the European continent but contributes at the same time to the globally oriented Group on Earth Observations Biodiversity Observation Network (GEO BON), which itself contributes to the Group of Earth Observation System of Systems (GEOSS). EU BON will build on existing information infrastructures such as GBIF, LifeWatch and national biodiversity data centres in Europe, and will integrate relevant biodiversity data from on-ground observations to remote sensing information, covering terrestrial, freshwater and marine habitats.

Original Source:

Hoffmann A, Penner J, Vohland K, Cramer W, Doubleday R, Henle K, Kõljalg U, Kühn I, Kunin WE, Negro JJ, Penev L, Rodríguez C, Saarenmaa H, Schmeller DS, Stoev P, Sutherland WJ, Ó Tuama É, Wetzel FT, Häuser CL (2014) Improved access to integrated biodiversity data for science, practice, and policy - the European Biodiversity Observation Network (EU BON). Nature Conservation 6: 49–65. doi: 10.3897/natureconservation.6.6498

EU BON and the European Space Agency: Earth Observations to support biodiversity monitoring

Tue, 08 Apr 2014 15:28:00 +0300

The European Space Agency (ESA) is Europe’s gateway to space. Its mission is to shape the development of Europe’s space capability and ensure that investment in space continues to deliver benefits to the citizens of Europe and the world. ESA is an international organisation with 20 Member States.

How is EU BON connected to space research? As a speaker at the EU BON General Meeting, which took place on Crete between 30 March - 3 April 2014, Marc Paganini of the European Space Agency explains the collaboration between ESA and GEO BON, and how EU BON is involved.

In the following interview he continues the topic:

Marc Paganini (left) and Dirk Schmeller (right) at the EU BON General Meeting 2014

1) For most of the general public space and biodiversity research hardly have anything to do with each other, can you explain how the European Space Agency (ESA) and the idea of remote sensing communities make these two meet?

It is widely recognized that in-situ observations available on biological diversity are very scarce for most of the Earth’s ecosystems and are often insufficient for determining precisely the global status and trends of biodiversity worldwide. In most cases, satellite Earth Observations do not provide a direct measurement of biodiversity but, if properly used with ground collection of biodiversity data and species and habitat modeling, remote sensing can become an important and essential component of biodiversity monitoring systems. There are multiple cases where remote sensing is often the only instrument that can offer large scale monitoring, as for example in highly variable ecosystems such as wetlands or in remote areas that can hardly be monitored by field campaigns.

The recent and future evolution of the portfolio of EO satellites offers huge potential for increasing the use of EO products into biodiversity monitoring systems. The lack of data continuity has always been a barrier for the biodiversity community to invest in EO technology. A commitment from Space Agencies to provide sustained observations on the long term is a strong incentive for the biodiversity community to invest in Space. The Sentinel series of the European Copernicus program, together with the freely available data from other space agencies such as the Landsat family of the US Geological Survey, will bring unprecedented long-term continuity of observations for the biodiversity community. In that context, free and open data policy to taxpayer-funded satellite remote sensing imagery is becoming a "de facto" standard amongst Space Agencies and a unique opportunity for the biodiversity community to use widely EO products to monitor biodiversity trends.

2) How is the ESA involved with the aims of EU BON, where do the two initiatives intersect?

ESA and many other Space Agencies are becoming more and more committed in helping the biodiversity community at large, in improving their capacity to use remote sensing data for monitoring biodiversity trends.

First there is a coordinated action from all Space Agencies through the Committee on Earth Observation Satellites (CEOS) and its involvement in the Group of Earth Observation (GEO). The GEO is a voluntary partnership of governments and international organizations who engaged jointly in developing a comprehensive, coordinated and sustained system of observations of the Earth with the ultimate objective to enhance scientifically-sound decision making. Biodiversity is one of the primary societal benefit areas of GEO and is addressed by the GEO Biodiversity Observation Network (GEO BON). CEOS is actively involved in GEO BON, principally through the participation to its steering committee of the European, US and German Space Agencies, namely ESA, NASA and DLR. Since EU BON is the principal European contribution to GEO BON, and has, amongst its objectives, the aim to integrate biodiversity data from ground observations to remote sensing information, ESA is directly concerned by the EU BON development in using remote sensing for terrestrial, freshwater and marine realms.

Second, ESA has its own EO application development programs, and funds a wide range of Research & Development projects for biodiversity and ecosystem services. In that context, ESA has established close relationships with the European Environment Agency (EEA) but also with the secretariats and scientific bodies of major Multilateral Environmental Agreements (MEA) such as the Convention on Biological Diversity (CBD) and the Ramsar Convention on wetlands. The findings of the ESA-funded EO projects on biodiversity and ecosystem services are highly relevant to EU BON. It is therefore expected that the ESA and EU BON activities in relation to the use of RS for biodiversity monitoring will offer some convergence of evidence showcases for the whole biodiversity community.

3) How do you see the future of collaboration with EU BON?

The high potential for satellite Earth Observations to support biodiversity monitoring is growing but is yet to be fully realised. The recent efforts of GEO BON, supported by the GEO Plenary and the CBD Conference of the Parties, to define a set of minimum essential observational requirements to monitor biodiversity trends will give considerable impetus for space agencies and for the remote sensing community to focus their work on a small set of well defined EO products that will serve the needs of the biodiversity community at large. In that context ESA is firmly engaged in supporting the development of these emerging Essential Biodiversity Variables (EBVs). EU BON together with ESA can be pioneers in the early development and demonstration.

New EU BON publication: Improved access to integrated biodiversity data for science, practice, and policy - the European Biodiversity Observation Network (EU BON)

Fri, 28 Mar 2014 15:38:00 +0200

The latest EU BON publication in the open access journal Nature Conservation is now a fact. The article titled "Improved access to integrated biodiversity data for science, practice, and policy - the European Biodiversity Observation Network (EU BON)" provides an overview of the project's background, research interests and vision for the future.

Abstract

Biodiversity is threatened on a global scale and the losses are ongoing. In order to stop further losses and maintain important ecosystem services, programmes have been put into place to reduce and ideally halt these processes. A whole suite of different approaches is needed to meet these goals. One major scientific contribution is to collate, integrate and analyse the large amounts of fragmented and diverse biodiversity data to determine the current status and trends of biodiversity in order to inform the relevant decision makers. To contribute towards the achievement of these challenging tasks, the project EU BON was developed. The project is focusing mainly on the European continent but contributes at the same time to a much wider global initiative, the Group on Earth Observations Biodiversity Observation Network (GEO BON), which itself is a part of the Group of Earth Observation System of Systems (GEOSS). EU BON will build on existing infrastructures such as GBIF, LifeWatch and national biodiversity data centres in Europe and will integrate relevant biodiversity data from on-ground observations to remote sensing information, covering terrestrial, freshwater and marine habitats.

A key feature of EU BON will be the delivery of relevant, fully integrated data to multiple and different stakeholders and end users ranging from local to global levels. Through development and application of new standards and protocols, EU BON will enable greater interoperability of different data layers and systems, provide access to improved analytical tools and services, and will provide better harmonised biodiversity recording and monitoring schemes from citizen science efforts to long-term research programs to mainstream future data collecting. Furthermore EU BON will support biodiversity science-policy interfaces, facilitate political decisions for sound environmental management, and help to conserve biodiversity for human well-being at different levels, ranging from communal park management to the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES). Additionally, the project will strengthen European capacities and infrastructures for environmental information management and sustainable development. The following paper outlines the framework and the approach that are pursued.

Original Source:

Hoffmann A, Penner J, Vohland K, Cramer W, Doubleday R, Henle K, Kõljalg U, Kühn I, Kunin WE, Negro JJ, Penev L, Rodríguez C, Saarenmaa H, Schmeller DS, Stoev P, Sutherland WJ, Tuama1 EO, Wetzel F, Häuser CL (2014) Improved access to integrated biodiversity data for science, practice, and policy - the European Biodiversity Observation Network (EU BON). Nature Conservation 6: 49–65. doi: 10.3897/natureconservation.6.6498

Despatch from the field: New species discovery, description and data sharing in less than 30 days

Thu, 27 Mar 2014 16:35:00 +0200

Researchers and the public can now have immediate access to data underlying discovery of new species of life on Earth, under a new streamlined system linking taxonomic research with open data publication.

The partnership paves the way for unlocking and preserving a wealth of 'small data' backing up research conclusions, which often become lost within a few years of an article's publication in an academic journal.

In the first example of the new collaboration in action, the Biodiversity Data Journal carries a peer-reviewed description of a new species of spider discovered during a field course in Borneo just one month ago. At the same time, the data showing location of the spider's occurrence in nature are automatically harvested by the Global Biodiversity Information Facility (GBIF), and richer data such as images and the species description are exported to the Encyclopedia of Life (EOL).

This contrasts with an average 'shelf life' of twenty-one years between field discovery of a new species and its formal description and naming, according to a recent study in Current Biology.

A group of scientists and students discovered the new species of spider during a field course in Borneo, supervised by Jeremy Miller and Menno Schilthuizen from the Naturalis Biodiversity Center, based in Leiden, the Netherlands. The species was described and submitted online from the field to the Biodiversity Data Journal through a satellite internet connection, along with the underlying data . The manuscript was peer-reviewed and published within two weeks of submission. On the day of publication, GBIF and EOL have harvested and included the data in their respective platforms.

The new workflow established between GBIF, EOL and Pensoft Publishers' Biodiversity Data Journal, with the support of the Swiss NGO Plazi, automatically exports treatment and occurrence data into a Darwin Core Archive, a standard format used by GBIF and other networks to share data from many different sources. This means GBIF can extract these data on the day of the article's publication, making them immediately available to science and the public through its portal and web services, further enriching the biodiversity data already freely accessible through the GBIF network. Similarly, the information and multimedia resources become accessible via EOL's species pages.

One of the main purposes of the partnership is to ensure that such data remain accessible for future use in research. A recent study published in Current Biology found that 80 % of scientific data are lost in less than 10 years following their creation.

Donald Hobern, GBIF's Executive Secretary, commented: "A great volume of extremely important information about the world's species is effectively inaccessible, scattered across thousands of small datasets carefully curated by taxonomic researchers. I find it very exciting that this new workflow will help preserve these 'small data' and make them immediately available for re-use through our networks."

"Re-use of data published on paper or in PDF format is a huge challenge in all branches of science", said Prof. Lyubomir Penev, managing director of Pensoft and founder of the Biodiversity Data Journal. "This problem has been tackled firstly by our partners from Plazi who created a workflow to extract data from legacy literature and submit it to GBIF. The workflow currently launched by GBIF, EOL and the Biodiversity Data Journal radically shortens the way from publication of data to their sharing and re-use and makes the whole process cost efficient", added Prof. Penev.

The elaboration of the workflow from BDJ and Plazi to GBIF through Darwin Core Archive was supported by the EU-funded project EU BON (Building the European Biodiversity Observation Network, grant No 308454). The basic concept has been initially discussed and outlined in the course of the pro-iBiosphere project (Coordination and policy development in preparation for a European Open Biodiversity Knowledge Management System, addressing Acquisition, Curation, Synthesis, Interoperability and Dissemination, grant No 312848).

Original source:

Miller J, Schilthuizen M, Burmester J, van der Graaf L, Merckx V, Jocqué M, Kessler P, Fayle T, Breeschoten T, Broeren R, Bouman R, Chua W, Feijen F, Fermont T, Groen K, Groen M, Kil N, de Laat H, Moerland M, Moncoquet C, Panjang E, Philip A, Roca-Eriksen R, Rooduijn B, van Santen M, Swakman V, Evans M, Evans L, Love K, Joscelyne S, Tober A, Wilson H, Ambu L, Goossens B (2014) Dispatch from the field: ecology of micro web-building spiders with description of a new species. Biodiversity Data Journal 2: e1076. DOI: 10.3897/BDJ.2.e1076

Issue 72 of the CBD Technical Series: Earth observation for biodiversity monitoring

Fri, 21 Mar 2014 17:58:00 +0200

Issue 72 of the CBD Technical Series is now out focusing on "EARTH OBSERVATION FOR BIODIVERSITY MONITORING : A review of current approaches and future opportunities for tracking progress towards the Aichi Biodiversity Targets". The issue shows how earth observation technologies can and should fit into systems for biodiversity monitoring, as well as demonstrates how these approaches could further improve relevant indicators for the Aichi Biodiversity Targets. It illustrates a clear track from observations done by remote sensing platforms through Essential Biodiversity Variables to biodiversity indicators and ultimately to the assessment of progress towards the Aichi Biodiversity Targets and ultimately in support of evidence-based decision making. EU BON is also featured in this report.

The goal of the CBD Technical Series is to contribute to the dissemination of up-to-date and accurate information on selected topics that are important for the conservation of biological diversity, the sustainable use of its components and the equitable sharing of its benefits. A large and growing body of evidence has clearly established the need to disseminate synthesis publications relevant to CBD objectives and selected reports presented at CBD meetings.

The CBD Technical Series is intended to:

Foster scientific and technical cooperation;
Improve communication between the Convention and the scientific community;
Increase awareness of current biodiversity-related problems and concerns; and
Facilitate widespread and effective use of the growing body of scientific and technical information on conserving and using biological diversity.

The full report is available here.

SUSTAIN EU-ASEAN Newsletter Issue 1: a project for more sustainable research cooperation between the EU and the ASEAN

Thu, 06 Mar 2014 14:48:00 +0200

The SUSTAIN EU-ASEAN project aiming at establishing a more sustainable and integrated research and innovation cooperation between the EU and the ASEAN region in the areas of climate action, resource efficiency and raw materials has now published its first project newsletter.

This first issue of the SUSTAIN EU-ASEAN Newsletter contains information about the outcomes from the first project Networking and Cluster Session that took place on 23 January 2014 in Bangkok, Thailand, as well as features a news item about the forthcoming sessions scheduled for 28 Match 2014 in Brussels, Belgium. More can be found in the Newsletter available here.

The SUSTAIN EU-ASEAN coordinating action will focus on climate action, resource efficiency and raw materials issues and will aim to enhance collaboration between researchers in the EU and the ASEAN region. Addressing these issues in a coherent way is vital for sustainable development that leads to economic prosperity, social cohesion and environmental integrity. Both regions have developed innovative ideas to reduce greenhouse gas emissions, to adapt to climate change, improve resource efficiency and manage raw materials.

Have your say for the future of biodiversity protection: BESAFE invites you to take part in the project’s second stakeholder workshop

Fri, 28 Feb 2014 15:10:00 +0200

Care about biodiversity protection and science-policy dialogue? The second BESAFE stakeholder workshop might be just the thing for you.

The BESAFE project invites all interested policy makers, NGO representatives, decision makers and people, who argue ('lobby') for biodiversity protection to take part in its second stakeholder workshop, focusing the results from the project case studies and the best ways to make them useful through a stakeholder focused web-based tool.

The workshop will be held on 13 and 14 May 2004 at the Park Inn Brussels Midi, Brussels, Belgium. To register and participate is easy just follow this link, which will take you to an easy to follow and use registration page.

On the afternoon of 13 May BESAFE will present the results of the project’s case studies and then their use and implications will be discussed with stakeholders. The morning of 14 May is reserved for a learning workshop on the best ways to unlock and present project results. As committed stakeholder involvement is crucial to BESAFE’s success, we hope that you will be able to join us in Brussels!

In a nutshell, BESAFE investigates the effectiveness of different types of arguments in convincing policy makers to take action for biodiversity protection in a variety of circumstances. The project has two specific focus areas: the interactions of environmental protection policies between governance scales, and the contribution that ecosystem services BESAFE is committed to produce practically usable results and to make them available and easily accessible through a web-based tool. This is a goal we can clearly only achieve through input and feedback from stakeholders. BESAFE is therefore set up as an interactive project in which we inform and consult those on a regular basis.

Deadline for registration is the 1st of April 2014, but registration will be closed earlier when our limit of 25 stakeholders is reached. Due to this limited capacity, registration is subject to approval.

EU BON’s contribution to the ASEAN-EU STI Days

Thu, 27 Feb 2014 11:32:00 +0200

The ASEAN-EU STI Days took place between 21-23 January 2014 in Bangkok, Thailand. During the event a special workshop "Integration of biodiversity data recording and information management systems for environmental sustainability: a call for EU-ASEAN collaboration" has been organized to stimulate EU-ASEAN collaboration in research on biodiversity informatics and integrative environmental information management.

A special EU BON dedicated presentation was given by Dr. Christoph Häuser at the workshop, which took place on 22 January. As a regional component of the Group of Earth Observation Biodiversity Observation Network (GEO BON), the EU BON project presented an innovative approach towards integration of biodiversity information systems from on-ground to remote sensing data, for addressing policy and information needs in a timely and customized manner.

Such an approach requires integration between social networks of science and policy, and technological networks of interoperating IT infrastructures. While focussing on Europe, EU BON is expected to connect and reach out globally, especially towards regions with many biodiversity hotspots such as SE-Asia.

The main objectives of the workshop were to:

Review and compare the situation regarding relevant biodiversity and Earth observation data and information sources/providers in EU and ASEAN;
Examine linkages between regional/national ASEAN and EU efforts with international / global biodiversity information systems (in particular GBIF, GEO BON);
Assess and discuss national vs. regional level priorities and needs with regard to integrated biodiversity information in ASEAN and Europe;
Identify common challenges and needs towards further integration of different types, levels, and scopes of available data and information systems;
To address how S&T cooperation between Europe and ASEAN in the area of biodiversity and Earth observation could be further developed to better serve policy needs (especially in light of IPBES), and to contribute to common goals towards sustainable economic development.

Five other presentations were given at the workshop on behalf of Global Biodiversity Information Facility (GBIF), ASEAN Centre for Biodiversity (ACB), FishBase Information and Research Group, Forest Research Institute Malaysia (FRIM), National Center for Genetic Engineering and Biotechnology (BIOTEC), and Thailand Bioresource Research Center (TBRC). Presentations from the meeting are available to view below, or alternatively visit: http://www.stidays.net/?page_id=510

Presentations:

Christoph L. Häuser (EU BON) on "The EU BON approach for information integration" (introduction to the workshop)

Tim Hirsch (GBIF) on "The Global Biodiversity Information Facility (GBIF) – collaborating to promote data access for research and policy"

Sheila G. Vergara (ACB) on "Knowledge sharing for biodiversity conservation in the ASEAN Region"

Christine Casal (FishBase) on "Using FishBase and AquaMaps to predict IAS establishment, species ranges and risk assessment"

Leng Guan Saw (FRIM) on "Herbarium Data and Plant Conservation in Malaysia"

Lily Eurwilaichitr (TBRC) on "TBRC as an online information intermediary: towards the sustainability of biological resources"

FishBase and SeaLifeBase Mirror Updates

Thu, 27 Feb 2014 07:12:33 +0200

ANNOUNCEMENT: The February 2014 update of the FishBase (www.fishbase.us and www.fishbase.ca) and SeaLifeBase (www.sealifebase.ca) websites are now available online.

FishBase stats to date: (32700 Species, 302900 Common names, 53600 Pictures, 49700 References, 2100 Collaborators, 700000 Visits/Month)

SeaLifeBase stats to date: (126000 Species, 27300 Common names, 11900 Pictures, 18200 References, 250 Collaborators)

Welcome to a new associate partner: MOU signed with HaMAARAG

Wed, 26 Feb 2014 18:14:00 +0200

EU BON takes care to enhance the expertise of its consortium by affiliating associate partners, an approach the project is planning to continue with. EU BON is pleased to welcome the latest addition to our list of associate partners - HaMAARAG- The Israel National Program for Ecosystem Assessment.

HaMaarag was established in 2006, following a decade’s worth of research in Long Term Ecological Research (LTER) stations. Its main objective is to promotescience-based management of open landscapes and natural resources, for human well-being and for long-term sustainability of nature in Israel.

HaMaarag aims to:
• Generate science-based knowledge about the state of ecosystems and biodiversity in Israel
• Strengthen the relationship between scientific knowledge, management and policymaking, in the fields of natural resource and open landscape management, land use planning and nature conservation.
• Improve accessibility of this knowledge to decision-makers and the general public.

By achieving these aims, HaMaarag promotes the development of a common language, knowledge base and perspective regarding ecosystems in Israel, thus facilitating efficiency of management and policy within the relevant organizations.

Stakeholder engagement and implementation of EU BON: WP6/WP7 kick-off, Leipzig, Germany

Wed, 26 Feb 2014 13:13:00 +0200

The official kick-off of the EU BON project WP6 Stakeholder engagement and science-policy dialogue and WP7 Implementation of GEO BON: strategies and solutions at European and global levels took place on 18-19 February 2014 in Leipzig, Germany. The two work packages are a crucial part of the project outlining the future actions towards ensuring the integration of the project with its global counterpart GEO BON, as well as paving the road towards successful stakeholder and policy engagement.

As a result of this first meeting further short-term and long-term steps were outlined for WP6 and WP7 towards the achievement of main project objectives. These steps include shaping the future EU BON GEO BON interactions and EU BON’s approach towards stakeholder engagement.

In the following interview Ilse Geijzendorffer gives an insight on the outcomes from the meeting.

This image shows the discussions during the WP6/WP7 kick-off meeting. Credit: Eugenie Regan

1) What are the project’s main stakeholders that you are planning to approach and interact with in the future?

EU BON aims to develop a blue print for a data infrastructure for data handling, storage, indicator computation and transfer of knowledge via a data portal available to knowledge seekers. This data infrastructure thus has to be useful to data holders who want their data to be used (e.g. citizen scientists, nature associations, scientists) and to those that seek knowledge (e.g. reporting bodies). EU BON reaches out to these stakeholders and to bodies that would be interested to host or have such a data infrastructure themselves. Our first stakeholder round table focused on European knowledge seekers and existing data portals. Our second stakeholder round table planned for this summer will focus on citizen scientists and the organisations that currently handle the citizen science data, to receive input on what these two stakeholder groups would like to see in such a data infrastructure blue print.

At the same time we reach out to ongoing platforms that consist of networks of knowledge and that have needs regarding their data flow. A very important partner in the data infrastructure development is GEO BON. The coordination of GEO BON has just changed and EU BON will reinforce the ties with GEO BON during the General Assembly in Crete coming in April.

2) Science-policy dialogue proves to be a crucial part for the success of large scale projects like EU BON, how are you tackle this challenge?

The objective of EU BON is a moving target in the sense that the blue print for data infrastructure will need to suit the needs for current and future monitoring. Additionally, the actual implementation, funding and hosting of such an infrastructure could be within a structure that may not yet exist in that form today. Changes in mission, coordination and targets occur constantly. To profit from lessons learned, we are in close contact with the Biodiversity Knowledge Project; a project that has already gained experience in the last four years in identifying the most important elements for handling data requests from knowledge seekers and in developing a suitable management plan.

For EU BON to achieve and reach its moving target, we keep in touch with the changes within the biodiversity knowledge landscape (e.g. progress in IPBES, CBD reporting, European targets ad evaluations); we explore multiple scenarios for the data infrastructure, the business plan and the implementation options; and we collaborate with a large range of stakeholders to include not only their ideas and needs, but also the transitions that they go through.

EU BON WP3/WP4 kick-off meeting, Solsona, Spain

Mon, 24 Feb 2014 16:37:00 +0200

A joint EU BON WP3-WP4 meeting took place on 25-27 November 2013 in Solsona, Spain. The main aim of the meeting was to officially kick off WP3 and provide forum for discussion of the planned work. The two work packages were presented with their main aims, scope and objectives. The place of the two work packages in the broader framework of EU BON, and the cross-links between the two, were also discussed.

In the following interview Hannu Saarenmaa and Klaus Henle share insights from the meeting:

1) WP3 ‘Improving tools and methods for data analysis and interface’ and WP 4 ‘Link environment to biodiversity: analyses of patterns, processes and trends’ are two of the core work packages in EU BON that are expected to accumulate a lot of genuine data and develop new tools for data analysis and interface. Can you explain in short what will your main activities involve?

HS: I can contribute to the project and these WPs a large-scale modelling technology from the BioVeL project that can process hundreds of species. This would be an engine to compute the first real Essential Biodiversity Variables (EBV).

KH: Our main activities will involve an analysis how available effort is best allocated in time and space to optimize results from monitoring. We will further assess how different sources of uncertainty influence conclusions derived from the analysis of monitroing data

2) What were the main results of the meeting in terms of the planned work and WP management?

HS: It was proposed to set up an EBV Task Force across the EU BON project. If we can do that, it would really give a thrust for the project. If we could pick up the Database of Monitoring Schemes from the EUMON project, as discussed, that would give us access to some large datasets.

KH: One main result was the identification of the concrete responsibilities (e.g. data provision, data analysis for terrestrial, freshwater and marine biodiversity) within the workpackage and to identify explicitly links to other workpackages.

3) What novelty will the work in these two work packages bring and what will the major results be?

HS: If they can create a new Ecological Niche Modelling algorithm that can also deal with spatial patterns, that would be interesting. Such a model actually exists in MigClim, but it is not yet widely used.

KH: We will get recommendations how monitoring can be optimized and a more comprehensive understanding of changes in biodiversity and their underlying causes

4) What are the immediate planned activities and when can the first results be expected?

KH: The most immediate planned activities it the screening of potentially available data needed for the analysis

5) How will the WP3/4 interact with GEO BON?

HS: The proposed EBV Task Force would need to interface very closely with GEO BON.

KH: We are engaged directly with key members of GEO-BON; e.g. we have regular meetings with Henrique Perreira.

International Conference on Global Environmental Change and GEO European Projects Workshops (Athens, Greece)

Tue, 11 Feb 2014 10:23:00 +0200

An international conference Adaptation Strategies to Global Environmental Change in the Mediterranean City and the Role of Global Earth Observations will take place between 10-11 June 2014 in Athens, Greece. The conference will explore the potential of earth observations and thrust climate information transfer from the science to the stakeholder application realm, in order to develop suitable adaptation measures at national and regional levels.

It will identify best adaptation programs and approaches to global environmental change in Mediterranean-climate cities. The aim is to enhance and strengthen European and international cooperation in the context of the activities within the Group on Earth Observations (GEO), and promote tools and options for adaptation strategies. The Conference will help local and regional authorities and stakeholders to gain insight on the role of EO-based services in adapting to climate chance impacts in urban hot-spot areas.

The eighth annual series of GEO European Projects Workshops will be consequently held on 12-13 June as a follow-up of the conference. The worksops are intended to bring all those interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS) from all over Europe together, in order to present their work and discuss how Europe can contribute to this international effort, especially in the wake of the launch of the new EU Framework Programme for Research, Horizon 2020, and the renewal of the mandate of GEO for another 10 years through the endorsement of the 2014.

Registrations opens: 16 February 2014

Information and registration: www.mariolopoulosfoundation.gr/medcity2014

First Announcement (pdf flie)

GEO issues a revised work plan 2012-2015

Wed, 05 Feb 2014 11:59:00 +0200

Following the GEO-X Plenary in Geneva earlier this year (15-16 January 2014), GEO now issues Revision 3 of the GEO 2012-2015 Work Plan incorporating comments from the meeting. The new work plan is available through the GEO Work Plan Information Management system.

The GEO Work Plan provides the agreed framework for implementing the GEOSS 10-Year Implementation Plan (2005-2015). It is a living document that is updated annually. The 2012-2015 Work Plan has been designed to meet the 2015 GEOSS Strategic Targets. As a result, the tasks of the Work Plan correspond to outcomes identified as being necessary to meet the Strategic Targets.

The highlighted actions in the revised work plan are as follows:

The GEO Work Plan provides a flexible action-oriented framework for developing new projects within and across areas, and coordinating strategies and investments. Benefits and opportunities include inter-alia: fostering networking and partnerships (new contacts and collaborations); launching regional and/or global initiatives (e.g. GEO BON, GEOGLAM); providing access to data (making more data available); enlarging user-bases (users grow in numbers and diversity); developing and maintaining capacity (participants build on complementarity); increasing visibility and high-level support (e.g. through the GEO Website, Newsletter, Plenary, Ministerial); and leveraging funding for activities (funding mechanisms value contributions to GEOSS implementation, like the European 7^th Framework Programme).

Joint Workshop Sierra Nevada LTER and EU BON

Tue, 04 Feb 2014 16:24:00 +0200

EU BON site data management workshop and Memorandum of Understanding

A joint workshop of the Sierra Nevada LTER site and EU BON was held on 29-31 January 2014 in Granada, Spain and was hosted by the University of Granada. The aim of this meeting was to bring together the Spanish members of the Sierra Nevada LTER site and test site partners from EU BON (WP1, WP2 and WP5) to discuss and develop a closer relationship in exchanging datasets and experiences in site management, long-term monitoring activities and technical requirements for data management.

During the first day of the workshop, 19 participants from EU BON, the Sierra Nevada LTER site (e.g. Regino Zamora Rodriguez and Francisco Bonet) and guests from the remote sensing EU project BIO_SOS and GBIF Spain gave an overview of their activities to obtain information on their projects and to point out likely synergies and linkages. First, the Sierra Nevada LTER site was introduced, particularly the methodologies to monitor and evaluate biodiversity and the structure of the information system Linaria was shown. Thereafter EU BON testing sites (Doñana, Rhine-Main, Amvrakikos) outlined their current activities regarding data collection, data processing and data integration, in addition to that the results of a recently conducted gap analysis of the test sites were presented. In the afternoon session of the meeting, the planned information architecture of EU BON was explained and ways outlined of how biodiversity data could be integrated.

At the second day, the participants visited a highly monitored area located in the southern part of Sierra Nevada (Alpujarras) that is covered mainly by Quercus pyrenaica forests. The field trip included stops at a meteorological station, a traditional hydrological system was visited to show former human impact in the area and the functionality of a field NDVI camera was shown. This site-trip was also used to officially hand-over the Memorandum of Understanding, signed between the University of Granada and EU BON, to strengthen the cooperation between the Sierra Nevada LTER and the EU BON test sites. Anke Hoffmann on behalf of EU BON handed the MoU to Professor Regino Zamora Rodriguez, the scientific coordinator of the Sierra Nevada Global Change Observatory. The University of Granada is now a new associate partner of EU BON, a consortium with currently 30 partners from 18 countries.

At the last day local scientists gave an overview of the research conducted in Sierra Nevada. After that session, the workshop aimed to discuss the functionality of the envisaged MetaCat (dataprovider for Metadata) approach for the EU BON test sites and the advantages of self-developed information system Linaria of the Sierra Nevada LTER site.

EU BON will further intensify the dialogue with the University of Granada and the Sierra Nevada LTER site. It is scheduled to have a further meeting at the upcoming General Meeting of EU BON (Greece, 30 March-2 April 2014) to strengthen the partnership with the LTER test site.

For further questions please contact Anke Hoffmann or Florian Wetzel

Presentations from the meeting:

Day 1

1. Zamora - Ramos - Sierra Nevada global change obs
2. Bonet - The Linaria information system
3. Hoffmann - Häuser - Introduction to EU BON
4. Juan Negro - CSIC-EBD
4. Juan Negro Donana 2
4. Juan Negro Donana 3
5. Stoll - test site Rhein - Main
6. Dailianis - test site Amvrakikos
7. Wetzel - Gap analysis
8. Palma Blonda - BIO_SOS and remote sensing
9. Pando - EU BON GBIF Granada 2014
10. Kunin- EU BON Work package 3

Day 3

1. Megia - Mendenez - Climate Change andd elevational range shifts
2. Gomez - Hybridization
3. Villar - Argaiz Long time series in high mountain lakes
4. Moreno - Vegetation changes during Holocene

Workshop Agenda

Workshop Minutes

Workshop Photos (Google+ | Facebook)

A new generation database to help ecological research on marine organisms

Tue, 28 Jan 2014 18:55:00 +0200

Ecosystem functioning, or the role which organisms play in an ecosystem, is becoming increasingly important in marine ecological and conservation. To facilitate such studies an international team of scientists lead by S. Faulwetter from the Hellenic Centre for Marine Research (HMRC) present the Polytraitsdatabase that aims to provide re-usable, and accessible data on marine bristle worms. The paper describing the new database was published in the innovative Biodiversity Data Journal, a pioneer in the publication of integrated biological data.

Benthic organisms participate in a number of biological processes in world water basins. Their functional diversity is an important community property demonstrating the role organisms have in the ecosystem and helping to understand how the community reacts to environmental changes. Polychaetes, or bristle worms, are marine worms famous for their peculiar shapes and often vivid coloration. More than 10,000 species are described in the class worldwide, most of which living in the shelf zone of the seas and oceans, burrowing in the sediment or swimming among the plankton.

At present, the Polytraits database contains almost 20,000 records on morphological, behavioural and reproductive characteristics of more than 1,000 species, all referenced by literature sources. All data on these engaging organisms can be freely accessed through the project website in different ways and formats, both human-readable and machine-readable. The new database presents a rich and easy to use collection, which cover morphological, reproductive and behavioural characteristics of polychaetes, as well as information on environmental preferences in an attempt to facilitate ecological research and conservation studies.

The researchers also provide a leading-edge approach to accessing, integrating and re-using the data. Through programming interfaces, the life-cycle information is automatically integrated into the Polychaetes Scratchpads, together with other data on polychaetes. Scratchpads are easy to use, adaptable, and provide powerful tools for managing biodiversity data. This taxon-centric virtual research environment allows browsing the taxonomic classification and retrieving various kinds of relevant information for each taxon, among which are also the collected biological traits.

Furthermore, the data are also accessible through Encyclopedia of Life's TraitBank which currently features over 3 million records related to more than 250 attributes for 272,720 taxa, including the Polytraits data. TraitBank serves as a provider for aggregated species trait data. All data uploaded there are archived and integrated with trait information from other sources to address issues of standardization of scientific data. This is the first complex database for marine organisms to be published in such an innovative way and demonstrates yet another example of collaboration between the data publisher Pensoft and Encyclopedia of Life.

IPBES invitation to nominate experts to aid in delivering the IPBES work programme

Fri, 24 Jan 2014 14:04:00 +0200

The second plenary of the Platform met in December 2013 and agreed an ambitious work programme for 2014-2018: Details of the agreed work programme are available in the advanced meeting report of the Plenary.

The IPBES Secretariat have now issued a call for experts to help scope, advise on and deliver the work programme. Governments and relevant stakeholders can put forward nominations, from which the Multidisciplinary Expert Panel of IPBES will select a maximum of 20% of experts from the stakeholder nominations, and the rest from the government nominations.

The UK expects IPBES to make use of the best scientists/experts from all relevant disciplines - natural science, social science, economics, data and modelling and traditional knowledge, and to achieve a geographical and gender balance among those experts in the delivery of the IPBES work programme.

More information of the required topics to be covered by experts, alongside the nomination forms and how to nominate can be found in the attachments below.

GEO to keep unleashing the power of open data: Mandate endorsed for another 10 years

Mon, 20 Jan 2014 10:18:00 +0200

On the 17 Jan in Geneva, the Group on Earth Observations (GEO) received unanimous endorsement to unleash the power of open data for a second decade. There was agreement to continue building on the organization’s first 10 years of pioneering environmental advances, which are designed to improve the quality of life of people everywhere. Fueled by open data, GEO’s efforts are now evident in most regions of the world. GEO is comprised of 90 member nations, the European Commission and 77 Participating Organizations.

"GEO is successfully meeting its mandate, which is to make data and other information open, accessible and easy to discover for decision makers around the world," said Mr. Janez Potočnik, European Commissioner for the Environment. "GEO’s vision is now operational, a proven force for putting sound science to work across nine essential areas: agriculture, biodiversity, climate, disasters, ecosystems, energy, health, water and weather."

GEO’s mandate is to drive the interoperability of the many thousands of space-based, airborne and in situ Earth observations around the globe. Without concerted efforts to coordinate across diverse observations, these separate systems often yield just snapshot assessments, leading to gaps in scientific understanding and hampering data fusion in support of better decision making for society. GEO aims to fill such gaps by providing a comprehensive, more integrated picture of our changing Earth. GEO is accomplishing this by establishing a Global Earth Observation System of Systems, known as GEOSS, and a Portal through which data and other information can be easily accessed at little or no cost.

"Rather than snapshot assessments, GEO gives us moving pictures of a changing planet," said Mr. Cao Jianlin, Vice Minister of the Ministry of Science and Technology of China. "Our world does not work just in the sea, on land, in the atmosphere or in space, and our policies cannot reflect individual domains either." China, for example, is partnering with 46 other GEO-member nations and several of GEO’s Participating Organizations to ensure that unprecedented data will be available to measure the effects of human activities and natural processes on the carbon cycle, the first such coordinated effort at the global level.

In South Africa, 22 nations and 5 GEO Participating Organizations recently launched AfriGEOSS with the goal of strengthening that continent’s capabilities to produce, manage and use earth observations. "This new initiative gives us the necessary framework to support informed decisions about a range of priorities, including food security, access to clean water and sanitation, natural resources, and coastal and disaster management," said Derek Hannekom, Minister of Science and Technology, South Africa.

By increasing the utility of open data about the Earth, GEO is helping to mitigate disasters, develop water-management strategies, support citizen observatories, and strengthen food security. GEO is driving the development of new tools, such as a cholera early warning system, as well as painting fuller pictures of complex environmental processes, including through global observations of ocean acidification at the global scale and observations of atmospheric greenhouse gases from space. GEO participants are also studying the footprint of mining practices, with the aim of minimizing future impacts on nearby communities and natural habitat, and focusing on links between air quality and health. There is also focus on the far-reaching consequences of melting glaciers and other serious cold-region concerns.

"The Obama Administration continues to work to catalyze the emergence of new businesses, products and services powered by the U.S. Government's open data. Increasing access to data and data sharing, both nationally and internationally, is crucial for unleashing innovation across our data-driven economy," said Dr. Patrick Gallagher, performing the duties of the Deputy Secretary of Commerce." GEO's collaborative work to integrate open data about the Earth continues to drive the development of new tools, services and scientific insights that are used around the world to support sound decision making."

PhD position on mapping ecosystem service trade-offs

Mon, 13 Jan 2014 13:53:00 +0200

The Mediterranean Institute for Biodiversity and Ecology (IMBE, Aix-Marseille University, Aix-en-Provence, France), in its Research Group "Macroecology and Biogeography of Global Change (MacroBio)" has a 36-months PhD position open for applications. The position is funded by the European Commission through the FP7 Research Project OPERAs and affiliated to the French National Scientific Research Centre (CNRS).

The topic is the broad-scale spatial mapping and quantification of ecosystem service trade-offs following from management of agro-ecosystems in the Mediterranean basin. The context of the research includes the environment (climate, land use) as well as trends in societal demands for services. Based on scientific literature, spatial databases and the outputs from a process-based ecosystem model, the candidate will analyze, quantify and map ecosystem service trade-offs. Service valuation and indicator representation methods will be developed with the IMBE team. The approach is pan-Mediterranean: a significant part of the work will therefore consist of helping to reduce gaps in data and knowledge for the sum of countries around the Mediterranean basin.

The research group works in close interaction with international programs such as Future Earth (through its project ecoSERVICES) and science-policy interfaces such as IPBES.

The successful candidate will have completed a Masters degree (or equivalent) in one of the environmental sciences, have experience in the handling of spatial data from databases, literature and models, have knowledge of existing concepts of ecosystem services, and be able to place results in the context of the Mediterranean basin (this includes the European, as well as North African and Eastern countries). The working language is English, appropriate skills in French or another of the Mediterranean languages will be an advantage.

The position will be filled when a suitable candidate has been identified. To apply for this position, please send a letter of application, demonstrating your ability to understand the task, and your CV as soon as possible, but before the 31st of January 2013, by e-mail to Ms. Gabriela Boéri (Gabriela.Boeri@imbe.fr). For any questions about the task, working conditions, or the OPERAs project, please contact Professor Wolfgang Cramer (Wolfgang.Cramer@imbe.fr).

EU BON with a workshop during ASEAN-EU STI Days 2014

Thu, 09 Jan 2014 18:15:00 +0200

The ASEAN-EU Science, Technology and Innovation (STI) Days will take place between 21-23 January 2014 in Bangkok, Thailand. As a part of the conference EU BON is going to hold a workshop called "Integration of biodiversity data recording and information management systems for environmental sustainability: a call for EU-ASEAN collaboration" (22nd January).

The agenda of the EU BON workshop includes:

Review and compare the situation regarding relevant biodiversity and Earth observation data and information sources/providers in EU and ASEAN;

Examine linkages between regional/national ASEAN and EU efforts with international / global biodiversity information systems (in particular GBIF, GEO BON);

Assess and discuss national vs. regional level priorities and needs with regard to integrated biodiversity information in ASEAN and Europe;

Identify common challenges and needs towards further integration of different types, levels, and scopes of available data and information systems;

To address how S&T cooperation between Europe and ASEAN in the area of biodiversity and Earth observation could be further developed to better serve policy needs (especially in light of IPBES), and to contribute to common goals towards sustainable economic development

The ASEAN-EU Science, Technology and Innovation Days serve as a visible forum for cooperation activities between the two regions in the field of STI. The event addresses researchers from most thematic areas – with a focus on the societal challenges with relevance to both regions – as well policy makers, research conducting companies and innovation managers. It takes place annually, alternating between an ASEAN and a European country. High-level policy makers as well as many research projects and companies seize the chance to network, discuss, exchange and inform themselves.

CLIMSAVE presents its Integrated Assessment Platform and final reports

Wed, 08 Jan 2014 15:08:00 +0200

The FP7 CLIMSAVE project ("Climate Change Integrated Assessment Methodology for Cross-Sectoral Adaptation and Vulnerability in Europe") finished at the end of 2013. The project developed the CLIMSAVE Integrated Assessment Platform which is a unique user-friendly, interactive web-based tool that enables stakeholders to interactively explore the complex multi-sectoral issues surrounding impacts, adaptation and vulnerability to climate and socio-economic change within the agriculture, forest, biodiversity, coast, water and urban sectors. Two versions of the tool have been developed: one for Europe and one for Scotland.

Two summary reports have been produced highlighting the policy relevant final results of the project for the European and Scottish case studies. The summary reports can be accessed from:

Europe Policy Brief: http://www.climsave.eu/climsave/doc/Policy_Brief_for_Europe.pdf

Scotland Policy Brief: http://www.climsave.eu/climsave/doc/Policy_Brief_for_Scotland.pdf

Citizen Science and EU BON

Mon, 30 Dec 2013 09:49:00 +0200

On 19 Nov 2013, a one-day EU BON workshop took place at the Leibniz-Association Headquarter in Berlin to further develop the strategy for citizen science in the project. The workshop was a joint workshop of both work package 1 and work package 6 (organized by MfN and UTARTU) to bring together the partners from EU BON that work in the area of citizen science. Furthermore, the workshop aimed to discuss and plan the further activities regarding the next stakeholder roundtable on Citizen Science which is scheduled for 2014.

In the morning session, participants gave an overview of citizen science activities within Europe. Eight presentations from partners gave insight into citizen science initiatives and showed interesting approaches of how citizens can be involved and how datasets with information on biodiversity can be generated (please find the pdf of the presentations and minutes of the meeting below). Linda Davies, director and initiator of OPAL, one of the Europe’s most well-known citizen science initiatives, encouraged to emphasize not just data-value of citizen science, but to look for educational and awareness-rising aspects.

After an informative session there were discussions how to proceed with citizen science related tasks in EU BON. The workgroup was formed to take next steps for developing the concept of a European citizen science strategy within EU BON. It was decided that best practice examples will be used to outline the most efficient methods for incorporating citizen science in biodiversity research. Many other next steps were discussed for EU BON’s citizen science initiative (definition of the concrete role EU BON can and should play, technical solutions for citizen science data and projects, further involvement of Citizen Science stakeholders, identification of gaps).

EU BON will further intensify the dialogue between different groups related to citizen science, after a big step was done by this meeting. For example, in the next EU BON stakeholder roundtable, stakeholders such as the EEA, DG Research and Communication, ECSA, Eye on Earth and other users from political administration and scientists will be involved to discuss their needs and the contribution EU BON may provide.

For further questions please contact Katrin Vohland or Veljo Runnel

Presentations from the meeting:

Cristina Garilao - FishWatcher

Falko Glöckler - Anymals and Plants

Katrin Vohland - Citizen Science Germany

Katrin Vohland - Preparation of citizen science stakeholder meeting

Thanos Dailianis - Greece SC Project COMBER

Veljo Runnel - CS in EU BON

Veljo Runnel - CS Science in Estonia

Wouter Koch - Norway CS Project Artsobservasjoner

Israel Peer - CS Status in Israel - GlueCAD

Minutes of the Meeting - Citizen Science Workshop

EU BON at IPBES-2, Antalya

Sat, 21 Dec 2013 13:32:00 +0200

Pollination and Land Degradation: Set as top Priorities for New Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES) after the plenary

IPBES was established in April 2012, as an independent intergovernmental body open to all member countries of the United Nations. The members are committed to building IPBES as the leading intergovernmental body for assessing the state of the planet's biodiversity, its ecosystems, and the essential services they provide to society.

The second meeting of the Platform's Plenary (IPBES-2) took place in Antalya, Turkey, from 9 to 14 December 2013. Around 400 delegates from over 100 governments, scientific organizations, civil society and the private sector, attended the plenary. It was agreed to develop a set of assessments on pollination and food production, land degradation and invasive species aimed at providing policymakers with the tools to tackle pressing environmental challenges.

IPBES Member Governments present at the meeting adopted a very ambitious initial work programme for the Platform for the next five years, and demonstrated strong commitment to its implementation by already pledging more than half (US$ 25.4 million) of the total US$ 43.5 million required, in what will be remembered as the "Antalya consensus".

EU BON was represented by the project coordinator Christoph Häuser (Museum für Naturkunde, MfN), and colleagues Tim Hirsch (Danish Biodiversity information Facility, DanBIF), Dirk Schmeller (Helmholtz Centre for Environmental Research, UFZ), Wolfgang Cramer and Ilse Geijzendorffer (National Center for Scientific Research, CNRS), Matthew Walpole (World Conservation Monitoring Centre, UNEP) and Lluís Brotons (European Bird Census Council, EBCC).

EU BON group photo from left to right: Tim Hirsch (DanBIF), Christoph Häuser (MfN), Matthew Walpole (UNEP), Ilse Geijzendorffer (CNRS), Dirk Schmeller (UFZ), Wolfgang Cramer (CNRS) and Lucas Joppa (Microsoft Reseach). Photo: Dirk Schmeller

Here are their views and comments on the meeting:

1) How can EU BON contribute to the success of IPBES?

Matthew Walpole: Knowledge generation is a key pillar of IPBES. Mobilising data and information on biodiversity and ecosystem services is an important element of knowledge generation, and will be vital in underpinning rigorous, comprehensive assessments. In that regard, and in particular in the context of potential European regional assessments, EU BON as an integral part of GEO BON has a clear contribution to make.

Dirk S. Schmeller: IPBES assessments will base on available data and newly collected data from organisations contributing to IPBES. While there are some global biodiversity information providers, like GBIF, EU BON goes further in bridging data collection and data infrastructure and transforming the data in policy relevant reports. Much of the work by IPBES relies on such a system, and EU BON would be a major step forward and if put on a global scale (as a contribution to GEO BON) will be crucial for the work of IPBES. EU BON should aim to organise a side event at IPBES-3, maybe jointly with GEO BON.

Tim Hirsch: EU BON and all of its partners, including GBIF, have a vitally important role in providing the data and information foundations for the work IPBES will carry out to strengthen the science-policy interface. All through the IPBES process, countries have committed to build on existing initiatives, and it is encouraging to see that approach is being followed as the institutions of the new platform emerge. For example, the proposed IPBES task force on knowledge and data, based on strategic partnerships with relevant institutions, provides a space for our data mobilization and integration activities to contribute to the assessment, knowledge generation, capacity building and policy support functions of the platform.

Ilse Geijzendorffer: By giving them the knowledge of what is required for successful assessment execution in terms of infrastructure, data management and governance. We can also provide demo results for them, for instance by computing an indicator required in one of the required assessments. Then they can start thinking of how they would like to communicate about these kinds of results and put in place the necessary procedures. We could also offer our services for a case study with a developing country on one of the identified assessments to show how their data and experts (including local and indigenous knowledge holders) could be included in the assessment.

Christoph Häuser: Yes, EU BON can and most certainly will significantly contribute to IPBES: Regardless of what the first thematic priorities for IPBES assessments and reviews will be , all assessments will ultimately depend on available, reliable and meaningful biodiversity data and information. Here, EU BON will be able to help by showing new and practical ways how to access integrated data layers and sources at various scales and for different interest and purposes. EU BON will also be able to help IPBES with its large and growing networks of institutions and experts, ranging from technical to socio-political areas.

2) How can IPBES participants best be made aware of EU BON and its relevance for IPBES?

Lluis Brotons: First of all, IPBES is a global, really ambitious initiative and EU BON faces a real challenge to effectively reach the audience currently developing the platform. EU BON should carefully select bridging channels between the work developed within the project and the IPBES priorities. Once these priorities have been identified, EU BON could easily become a key partner in providing valuable information, methods and concepts to be used in the IPBES assessments. It will be specially important to focus on the thematic assessments that IPBES plans to carry out in the first place such as pollination and food production or the methodological oriented assessment on support tools and methodologies for scenario analysis and modelling of biodiversity and ecosystem services that should be started during 2014. The main work ahead for EU BON on making IPBES participants best aware of our work rests upon our ability to translate EU BON facilities, data and methods to the approaches and needs of the platform. We will need to be proactive here, we should not wait for IPBES to ask for help, we need to offer it in an attractive and adequate manner.

Matthew Walpole: Whilst GEO BON will be known to participants, and is mentioned in IPBES documentation, EU BON as a contributor to GEO BON is currently less visible. It's profile may be best raised in the context of GEO BON's role, with particular reference to its unique contributions, including (i) in a European context as (ii) a potential model for other regions.

Dirk S. Schmeller: One important possibility to make EU BON more visible is to show what the BON could look like, what possibilities in regard to reporting tools exist and how it could contribute to GEO BON.

Tim Hirsch: It will be important for EU BON and its partners to continue to engage actively in the various processes and procedures that are emerging from this plenary meeting: for example where we may contribute data and information to the various thematic and regional assessments of biodiversity and ecosystem services that will be carried out during the first IPBES Work Programme over the next five years.

Christoph Häuser: While IPBES is still struggling to become really operational, EU BON should strive to lead by example: it could provide concrete show cases of integrative approaches towards biodiversity information; for example, how to pull together data from different layers, such as GBIF point occurrence and habitat or land cover data for a given areas, or how to operationalise Essential Biodiversity Variables or meaningful indicators from existing data sources.

3) Which IPBES members/participants/stakeholders do you see as key partners for EU BON, and which ones have you contacted?

Lluis Brotons: IPBES is still shaping itself and one of the challenges ahead for the platform is the participation of stakeholders in the different processes required to complete and analyse the planned thematic assessments. In this line, in the second IPBES plenary, different EU BON partners have been teaming up with a number of other international stakeholders (IUCN, ICSU amongst others) to ensure that the scientific community and other knowledge holders directly contribute to the key parts of process. This is essential for the credibility of the assessments and the discussions in the meetings in Turkey have strongly revolved around the forms this participation may finally take. I would stress at this point that I do not clearly see key partners in IPBES, but more of a need to be also here proactive and work with other proactive stakeholders to articulate mechanisms by which non-governmental organisations are able to feed into the process. These mechanisms are likely to be critical in the future work of EU BON.

Matthew Walpole: There are various networks, initiatives and organisations promoting better biodiversity/environmental data mobilisation, integration, management and use (such as 'Eye on Earth' convened by the Abu Dhabi Global Environmental Data Initiative (AGEDI)). GEO BON/EU BON members (including GBIF and UNEP-WCMC) participate in such networks and it would be beneficial to forge stronger collaborative links. Other obvious partners include regional/national biodiversity centres beyond Europe with which EU BON might share/compare approaches as part of regional exchange and capacity development.

Tim Hirsch: It will particularly important to engage with the members of the Multidisciplinary Expert Panel (MEP) elected from each region to guide the scientific priorities of the platform's work, based on requests from governments, as well as the many scientific bodies, civil society groups and of course governments involved in the new platform - I have contacted a good proportion of them!

Ilse Geijzendorffer: Firstly, the stakeholder representation (our infrastructure could be included in the end as in kind contribution by an institute or network). Secondly, delegates favourable of scientific IPBES involvement (e.g. Switzerland, Germany, Portugal, the Netherlands, and Germany). I have not talked to Switzerland and the Netherlands.

Christoph Häuser: During IPBES2, I had the opportunity to make contacts with NatureServe, a prime organization and big player focusing on biodiversity information in the Western Hemisphere. It is these kinds of regional or global organizations with significant experiences and substantial assets in the area of biodiversity information generation and management, which EU BON should be liaising with more. With the (current) IPBES plenary being very much dominated by governments, it will remain a good forum for scientific initiatives and projects, such as EU BON, to build links to the political level, practically from all regions.

Dirk S. Schmeller: I agree with Christoph that EU BON needs to identify key players, such as Nature Serve, Earth Watch, dataONE and others. I had the pleasure to talk to the lead scientist of Nature Serve here in Antalya, Healy Hamilton, who expressed her interest in EU BON and GEO BON to allow an exchange of experiences and technologies. Such a collaboration will likely be beneficial for both projects/organisations. My interactions with MEP members from the different UN regions as well as delegates from different countries, which were much facilitated by IPBES, also did show the huge interest of these peers in an observation system to inform policy, but also the gaps in making known EU BON and GEO BON in some regions (e.g. Caribbean were unaware of GEO BON).

4) Which will be the emerging/new areas/challenges/questions regarding biodiversity data and monitoring coming from IPBES which EU BON needs to consider / take on board?

Lluis Brotons: Since IPBES it is in its early stages it is still difficult to identify specific questions or challenges regarding biodiversity data needs for this process. However, the advice I can give to EU BON partners is that they become familiar as early as possible with the scoping of the thematic assessments planned within the context of IPBES in the forthcoming years. The information provided in the initial scoping of these assessments may be a useful tool for EU BON allowing the different groups to move their developments in line that anticipate the needs that the assessments are likely to face in the near future. Explore the scoping for the thematic assessments (amongst other IPBES documents) here (http://ipbes.net/plenary/ipbes-2-documents.html)

Matthew Walpole: EU BON could usefully consider and articulate which parts of the IPBES conceptual framework it can provide information for, as well as thinking about how it connects to regional (European), and global, assessment processes within the IPBES programme of work. Equally, given the importance within IPBES placed upon outreach and communication to decision-makers across multiple sectors, EU BON could usefully consider innovative visualisation approaches for its data products and outputs.

Tim Hirsch: One of the strong themes that has run through this IPBES meeting is the need to incorporate and recognize multiple knowledge systems, including indigenous and traditional knowledge, when carrying out assessments of biodiversity and ecosystem services. There are many challenges and opportunities arising out of this for EU BON and its partners, for example the development of community-based monitoring programmes that can contribute valuable data and information for the science-policy interface, but must be handled with due respect and sensitivity to build trust in participating communities.

Ilse Geijzendorffer: Fast track assessments, need their answers fast! Additionally, transparency of the analysis maybe not appreciated by some regional hubs or Members of the platform. This maybe posing problems for the willingness to use a shared data transfer system. Finally, if 80% of the experts will be nominated by the Members of the Platform, this can pose problems for the willingness of some expert to use transparent analysis methods. This has to be endorsed in the current protocol development.

Christoph Häuser: This remains a largely open question, as IPBES is still much preoccupied with procedural and organizational issues. With the regional approach towards assessments built into IPBES, however, it is already clear that a regional perspective towards biodiversity information and interpretation, such as an integrated European biodiversity data portal, will be a major asset to offer. As IPBES furthermore stresses the incorporation of other forms of knowledge, a focus on linking with and incorporating citizen science initiatives seems a logical follow up for EU BON.

European Commission launches pilot to open up publicly funded research data

Mon, 16 Dec 2013 17:59:00 +0200

Today, 16/12/2013, the European Commission announced the launch of a new Pilot on Open Research Data in Horizon 2020, to ensure that valuable information produced by researchers in many EU-funded projects will be shared freely. Researchers in projects participating in the pilot are asked to make the underlying data needed to validate the results presented in scientific publications and other scientific information available for use by other researchers, innovative industries and citizens. This will lead to better and more efficient science and improved transparency for citizens and society. It will also contribute to economic growth through open innovation. For 2014-2015, topic areas participating in the Open Research Data Pilot will receive funding of around €3 billion.

The Commission recognises that research data is as important as publications. It therefore announced in 2012 that it would experiment with open access to research data (see IP/12/790). The Pilot on Open Research Data in Horizon 2020 does for scientific information what the Open Data Strategy does for public sector information: it aims to improve and maximise access to and re-use of research data generated by projects for the benefit of society and the economy.

The Pilot involves key areas of Horizon 2020:

Future and Emerging Technologies
Research infrastructures – part e-Infrastructures
Leadership in enabling and industrial technologies – Information and Communication Technologies
Societal Challenge: Secure, Clean and Efficient Energy – part Smart cities and communities
Societal Challenge: Climate Action, Environment, Resource Efficiency and Raw materials – with the exception of topics in the area of raw materials
Societal Challenge: Europe in a changing world – inclusive, innovative and reflective Societies
Science with and for Society

Neelie Kroes, Vice-President of the European Commission for the Digital Agenda said "We know that sharing and re-using research data holds huge potential for science, society and the economy. This Pilot is an opportunity to see how different disciplines share data in practice and to understand remaining obstacles."

Commissioner Máire Geoghegan-Quinn said: "This pilot is part of our commitment to openness in Horizon 2020. I look forward to seeing the first results, which will be used to help set the course for the future."

Projects may opt out of the pilot to allow for the protection of intellectual property or personal data; in view of security concerns; or should the main objective of their research be compromised by making data openly accessible.

The Pilot will give the Commission a better understanding of what supporting infrastructure is needed and of the impact of limiting factors such as security, privacy or data protection or other reasons for projects opting out of sharing. It will also contribute insights in how best to create incentives for researchers to manage and share their research data.

The Pilot will be monitored throughout Horizon 2020 with a view to developing future Commission policy and EU research funding programmes.

EU BON at the 2013 International Conference on Open Data in Biodiversity and Ecological Research, Taiwan

Thu, 05 Dec 2013 13:31:00 +0200

The 2013 International Conference on Open Data in Biodiversity and Ecological Research took place between 20 - 22 Nov 2013, hosted by Academia Sinica in Taipei, Taiwan. With the aim to promote open data in science twelve foreign speakers introduced relevant projects and initiatives in the sphere of biodiversity informatics: AP-BON, DataONE, Ecological Research, EU-BON, Global Biodiversity Information Facility (GBIF), Japan Biodiversity Information Facility (JBIF), linked open data, National Ecological Observatory Network (NEON), Pensoft, and Thomson Reuters.

Dirk Schmeller (UFZ) and Lyubomir Penev (Pensoft), who presented EU BON at the conference, share their experience in a recent interview:

Lyubomir Penev (Pensoft)

What are the aims and main outcomes from this meeting?

LP: Taiwan has an impressive national policy with regard to data management in biodiversity sciences. The meeting summarised years of effort of Taiwanese scientists and especially of Academia Sinica to integrate data and make them publicly available. It is sufficient to mention that Taiwan has established four national nodes of the largest international biodiversity platforms, that is TaiBIF (of GBIF), TaiCOL (of Catalogue of Lige), TaiEOL (of EOL) and TaiBOL (of Barcode of Life).

Were there any biodiversity data integration models presented at the meeting that can be adopted and implemented in EUBON?

LP: Perhaps not directly, however the impressive amount and quality of work and the accumulated experience of the Taiwanese and Japanese colleagues would certainly be of value for EU BON. In addition, there are well established contacts already between the FP7 project SCALES and the National University of Taiwan which could serve as a stepping stone as well, because two of the SCALES partners participate in EU BON and at the meeting (UFZ and Pensoft).

The interest to the EU BON presentation by Dirk was great. An indicator for that was that more than 120 EU BON leaflets have been picked up by the participants from the information desk.

Did you discuss any opportunities for partnership with organizations and initiatives from Asia and America, which deal with biodiversity data integration and accessibility?

LP: Yes, there were a lot of discussions how to mobilize and publish biodiversity data and most probably several data publishing projects will appear as a result of the discussions. These pilots could be used for the EU BON goals.

Dirk Schmeller (UFZ)

US National Ecological Observatory Network (NEON) has activities similar to those planned by WP4 Link environment to biodiversity: analyses of patterns, processes and trends. Is there something that EU BON can learn from the experience of its American colleagues?

DS: It is important to keep a close link with Brian Wee and NEON, as they have a head start in comparison to EU BON. I am sure that a collaboration would benefit EU BON to work efficiently.

What is your prognosis for the successful establishment of the data publishing model in scholarly literature, and more specifically in spheres such as Ecology, Genetics, Physiology and Paleontology?

DS: Most research is financed by taxpayer money and should become publicly available once the analyses a researchers has intended are completed. I see a huge potential to publish this data in scholarly literature. I, however, see also quite some difficulties to recombine relevant datasets across different sources for further going analyses. I also see difficulties in the willingness of researchers to share data, as in many cases they see these as their own.

Linked Open Data (LOD) is a new and prominent technology to publish and share data on the web. Could you please explain what exactly hides behind this concept, and how could EU BON benefit from it?

LP: The meeting in Taiwan was impressive also in the wide representation of the Resource Description Framework (RDF) technologies in integration of biodiversity data, especially from a group from the National Museum of Japan and the University of Tokyo. RDF and the OWL Web Ontology Language are definitely the way to go if we want to make diverse data sets interoperable; the implementation of RDF in a pilot phase would be of primary importance for the success of EU BON.

Taking the data out of paper

Wed, 04 Dec 2013 14:34:00 +0200

Ecological modellers require reliable sources of data for their analysis. Often, these sources are databases, checklists and specimen labels. Yet another rich source is the corpus of biological literature. It is estimated that there are well over 100 million pages of scientific publications and the volume grows every year. Publishing in advanced XML-based journals, such as Zookeys, Phytokeys or the Biodiversity Data Journal is recommended for new data, but what is the solution for legacy texts?

The EU FP7 project pro-iBiosphere has been piloting the mark-up and extraction of biological information from literature, which has been pioneered by Plazi (Agosti & Egloff, 2009). The EU FP7 Coordination and Support Action "pro-iBiosphere" was launched to investigate ways to increase the accessibility of biodiversity data, improve the efficiency of its curation and increase the user base of biodiversity data consumers and applications. The project addresses the technical and semantic interoperability between different forms in which data are published and analyses the sustainability issues related to the maintenance and curation of biodiversity data and derived information and knowledge. It also involves encouraging the biodiversity community to publish biodiversity data in a way that satisfies the technical requirements for an envisioned Open Biodiversity Knowledge Management System.

In order to reach these objectives three pilots for data mark-up and one for interoperability are being conducted (for detailed information on the pilots please see here). The mark-up pilots are evaluating accessibility of data within literature for a wide range of organisms and data types; and ways to facilitate extraction of biological information from literature, including observations, traits, nomenclature, habitat information and interactions between organisms. For example, one pilot is looking at biogeographic data using the species Chenopodium vulvaria as a subject. In another, trait data is being extracted from literature on tropical mistletoes; while yet others are extracting data from papers on spiders, ants, centipedes, mosses and fungi.

In order to extract these data one can use either "born" digital texts or scanned texts, converted through text capture. These texts are then progressively marked up into XML documents, with tags defining the meaning of the containing text. The degree of mark-up granularity and the choice of textual elements to be marked-up depend on the type of data to be extracted and its granularity in the text. In taxonomically based literature, text is usually divided into the individual "treatments" for each species. Fortunately, most paragraph elements of these texts are in standard formats, for example, separate blocks of text contain the physical description of the organism, details of the distribution and habitat information, often separated with sub-headings.

The pro-iBiosphere pilots have used several methods for mark-up, but the main tool has been the GoldenGate Editor, which combines manual and automated methods to identify key text elements. For example, an algorithm identifies Latin names and then an interface guides the user through the verification of the algorithm’s results. Once marked-up, the XML document can be uploaded to the Plazi document repository. Plazi is a not-for-profit organization devoted to promoting open-access to taxonomic literature. You are free to use the data contained in Plazi’s repository and if you want you can refine the mark-up for your own purposes.

Extracting data from the legacy literature can be expensive. Modern XML based publications have additional advantages of linkages via DOI identifiers, and immediate dissemination to harvesters like EOL or GBIF. Yet, digitisation and mark-up has the possibility to reanimate the data in our publications, making them almost as useful as modern linked publications.

Task 3.4 of EU-BON is to develop tools to prepare, extract and mine published biodiversity literature (led by Plazi - Donat Agosti). For this task Plazi is looking for rich sources of data from the biodiversity literature, particularly where those data can be applied within other EU-BON tasks. For further information please contact Plazi

Agosti, D., & Egloff, W. (2009). Taxonomic information exchange and copyright: the Plazi approach. BMC research notes, 2(1), 53. doi:10.1186/1756-0500-2-53

Quentin Groom (National Botanic Garden, Belgium) & Donat Agosti (Plazi)

Job Alert: GEO BON Executive Director, Martin-Luther-Universität Halle-Wittenberg in cooperation with GEO BON and iDiv

Tue, 26 Nov 2013 14:45:00 +0200

The Martin-Luther-Universität Halle-Wittenberg offers in cooperation with GEO BON and iDiv the position of Executive Director for the duration of 30 months (initially limited till September 30th, 2016 with possibility of extension). The Executive Director will work in close collaboration with the incoming Chair of the GEO BON Steering Committee, Prof. Henrique M. Pereira (iDiv) and the incoming vice-chair, Dr. Mike Gill (Environment Canada), thematic workgroup coordinators, regional BON coordinators, the GEO BON Steering Committee and the GEO secretariat.

Requirements:
• Ph.D. in ecology or related field
• excellent diploma or master degree in a relevant field
• demonstrable experience in project management with executive leadership in organizations a plus
• excellent communication skills, fluency in English, knowledge of other languages being a plus
• willingness to travel abroad frequently, outgoing and at ease in multicultural backgrounds

Topic/job description:
• Providing visible leadership for GEO BON and representing GEO BON at scientific and policy meetings
• Creating funding opportunities through engagement with potential donors
• Coordinating activities of GEO BON Working Groups and Regional Observation Networks
• Liaising with national and regional organizations involved in biodiversity monitoring and reporting
• Organize the Steering Committee, All-hands and other meetings of GEO BON and manage the communication activities of GEO BON, including a regular newsletter and a website
• Manage, as and when required, activities and inputs requested by the GEO secretariat

Applications should be directed to emily.keller@idiv.de and addressed to Henrique M. Pereira, Professor of Biodiversity Conservation, iDiv. Applications should be in a single PDF file with reference file number (D 189/2013). Applications are accepted until January 6th, 2014.

For more information see attached the full text of the job offer.

EUBrazilOpenBio final newsletter is now available

Tue, 26 Nov 2013 13:33:00 +0200

The final EUBrazilOpenBio newsletter for November 2013 is now available. The newsletter presents the final press release showcasing the main results of 2 year collaborative work, namely: the innovative, web-based working environment designed to serve biodiversity scenarios; the new version of the Catalogue of Life cross-mapping tool developed in the i4Life project; the provision of the Ecological Niche Modelling tool as a service through the openModeller extended web service, and its application in collaboration with BioVeL; the EUBrazilOpenBio Joint Action Plan.

This newsletter highlights:

EUBrazilOpenBio Joint Action Plan - drawing on policy strategies, analysing current progress in contributing to international targets and defining actions for future collaborative research. It defines common actions with the aim of contributing to relevant Aichi Targets in the years ahead.
EGI federatec use case on ecology - Over the last two years, BioVeL and EUBrazilOpenBio have joined forces to make openModeller ready for cloud deployment. Work within the EGI Federated Cloud Task Force has led to considerable success in enabling the openModeller service on the EGI Federated Cloud.
EUBrazilOpenBio results - EUBrazilOpenBio Technical developments, training materials and sessions, publications and papers, media spotlights and policy results all collected in one page.
A vision from the Experts - "The Crossmapper itself is a great tool, and an ideal way to identify errors and updates". Dr Christina Flann is one of the experts providing their vision on EUBrazilOpenBio story.

You can find an online version of the final EUBrazilOpenBio newsletter here.

Job Alert: Postdoctoral Research Assistant, School of Geography and the Environment, Oxford

Wed, 20 Nov 2013 11:14:00 +0200

The Environmental Change Institute (ECI) in the University of Oxford is seeking to appoint a Postdoctoral Research Assistant to join the existing research team on two EU funded research projects: IMPRESSIONS and OPENNESS.

The role will require the development of a range of methodological and modelling approaches, including quantitative, qualitative and mixed techniques, to address a number of environmental science challenges in the contexts of operationalising ecosystem services and investigating cross-sectoral climate change impacts and vulnerabilities. The post provides the opportunity for a researcher with skills in programming, GIS and statistics to develop innovative solutions in research areas critical to ensuring the resilience of our future environment and to expand the modelling capability of the ECI team.

You will have a PhD in a discipline relevant to modelling or environmental sciences and a background in programming and modelling. You will have experience of using Geographical Information Systems and a strong grounding in statistics and/or operational research. Excellent communication skills both written and oral are essential. You will be self-motivated, with the ability to work independently.

This post is available for 24 months in the first instance.

The closing date for applications is 12.00 noon on Wednesday 18 December 2013. It is intended that interviews will be held during the week beginning 13 January 2014.

For more information and to apply for this position, click here.

Job Alert: Part-time Research Assistant, School of Geography and the Environment, Oxford

Wed, 20 Nov 2013 11:00:00 +0200

The Environmental Change Institute (ECI) in the University of Oxford is seeking to appoint a Research Assistant to join the existing research team on two EU funded research projects.

The role will require the development and application of methodologies for undertaking systematic literature reviews, quantitative analysis of model outputs, contribution to the writing of research papers, organisation of workshops and large meetings, and the performance of other duties necessary for the successful completion of both the IMPRESSIONS and OPENNESS projects

You will have a Masters or equivalent in an environmental discipline and strong quantitative skills. You must have the ability to undertake systematic literature reviews and synthesise findings and assist in the management of large research projects. Excellent organisational and writing skills are essential.

This is a part-time (50% FTE) post and is available for 24 months.

The closing date for applications is 12.00 noon on Wednesday 18 December 2013.

You can find more information and apply here.

Next-generation global e-infrastructure for taxon names registry

Mon, 04 Nov 2013 17:55:00 +0200

Zookeys, the first zoological journal to introduce automatic registration in ZooBank

The latest issue of ZooKeys - no. 346 - has been automatically registered in ZooBank on its day of publication last Friday. This marks the successful deployment of an automated registration-to-publication pipeline for taxonomic names for animals. The innovative workflow was jointly funded by the EU FP7 funded project pro-iBiosphere and a U.S. National Science Foundation project to develop the Global Names Architecture (DBI-1062441).

The process of post-publication recording and indexing of species names has a long tradition, in some cases dating as far back as the middle of 19th century. But now in the 21st century with the advance of modern technologies and the opportunity to publish taxonomic novelties online, the process of post-publication recording brought into focus the concept of automated pre-publication registration.

Why is this important? The proportion of 'turbo-taxonomic' papers describing hundreds of new species increases. Registration of hundreds of new species is an issue, however it is even more important that the final publication data of the pre-registered names are reported back to ZooBank on the day of publication.

Launched as an open access peer reviewed journal in 2008, to coincide and adopt from inception the International Code of Zoological Nomenclature changes for electronic publications, ZooKeys was the first journal to provide a mandatory in-house registration in ZooBank. Since 2008, it has contributed about one third of all names currently registered in ZooBank. With the adoption of the automated ZooBank registration, ZooKeys continues its mission to set novel trends in biodiversity publishing.

Implementation of automated workflows and invention of XML-based tools will facilitate the process of publication and dissemination of biodiversity information. It will pave the way for unification and streamlining the registration process, even more to building the next-generation e-infrastructure for a common global taxon names registry. Within the pro-iBiosphere project and in cooperation with Plazi that have created the TaxPub XML schema, an automated registration workflow for plants has already been established between the International Plant Names Index (IPNI) and the PhytoKeys journal, to be applied soon also for fungi between Index Fungorum and the journal MycoKeys.

Populations of grassland butterflies decline almost 50 % over two decades

Wed, 30 Oct 2013 16:02:00 +0200

By http://www.eea.europa.eu/

Grassland butterflies have declined dramatically between 1990 and 2011. This has been caused by intensifying agriculture and a failure to properly manage grassland ecosystems, according to a report from the European Environment Agency (EEA).

The fall in grassland butterfly numbers is particularly worrying, according to the report, because these butterflies are considered to be representative indicators of trends observed for most other terrestrial insects, which together form around two thirds of the world’s species. This means that butterflies are useful indicators of biodiversity and the general health of ecosystems.

Seventeen butterfly species are examined in 'The European Grassland Butterfly Indicator: 1990–2011’, comprising seven widespread and 10 specialist species. Of the 17 species, eight have declined in Europe, two have remained stable and one increased. For six species the trend is uncertain.

Butterflies examined in the report include the Common Blue (Polyommatus icarus), which has declined significantly, the Orangetip (Anthocharis cardamines), which seems to be stable since 1990, and the Lulworth Skipper (Thymelicus acteon), which shows an uncertain trend over the last two decades.

Hans Bruyninckx, EEA Executive Director, said: "This dramatic decline in grassland butterflies should ring alarm bells – in general Europe’s grassland habitats are shrinking. If we fail to maintain these habitats we could lose many of these species forever. We must recognise the importance of butterflies and other insects – the pollination they carry out is essential for both natural ecosystems and agriculture." more...

The cyber-centipede: From Linnaeus to big data

Tue, 29 Oct 2013 13:34:00 +0200

Taxonomic descriptions, introduced by Linnaeus in 1735, are designed to allow scientists to tell one species from another. Now there is a new futuristic method for describing new species that goes far beyond the tradition. The new approach combines several techniques, including next generation molecular methods, barcoding, and novel computing and imaging technologies, that will test the model for big data collection, storage and management in biology. The study has just been published in the Biodiversity Data Journal.

While 13,494 new animal species were discovered by taxonomists in 2012, animal diversity on the planet continues to decline with unprecedented speed. Concerned with the rapid disappearance rates scientists have been forced towards a so called 'turbo taxonomy' approach, where rapid species description is needed to manage conservation.

While acknowledging the necessity of fast descriptions, the authors of the new study present the other 'extreme' for taxonomic description: "a new species of the future". An international team of scientists from Bulgaria, Croatia, China, UK, Denmark, France, Italy, Greece and Germany illustrated a holistic approach to the description of the new cave dwelling centipede species Eupolybothrus cavernicolus, recently discovered in a remote karst region of Croatia. The project was a collaboration between GigaScience, China National GeneBank, BGI-Shenzhen and Pensoft Publishers.

Eupolybothrus cavernicolus has become the first eukaryotic species for which, in addition to the traditional morphological description, scientists have provided a transcriptomic profile, DNA barcoding data, detailed anatomical X-ray microtomography (micro-CT), and a movie of the living specimen to document important traits of its behaviour. By employing micro-CT scanning in a new species, for the first time a high-resolution morphological and anatomical dataset is created - the 'cybertype' giving everyone virtual access to the specimen.

This, most data-rich species description, represents also the first biodiversity project that joins the ISA (Investigation-Study-Assay) Commons, that is an approach created by the genomic and molecular biology communities to store and describe different data types collected in the course of a multidisciplinary study.

"Communicating the results of next generation sequencing effectively requires the next generation of data publishing" says Prof. Lyubomir Penev, Managing director of Pensoft Publishers. "It is not sufficient just to collect 'big' data. The real challenge comes at the point when data should be managed, stored, handled, peer-reviewed, published and distributed in a way that allows for re-use in the coming big data world", concluded Prof. Penev.

"Next generation sequencing is moving beyond piecing together a species genetic blueprint to areas such as biodiversity research, with mass collections of species in "metabarcoding" surveys bringing genomics, monitoring of ecosystems and species-discovery closer together. This example attempts to integrate data from these different sources, and through curation in BGI and GigaScience's GigaDB database to make it interoperable and much more usable," says Dr Scott Edmunds from BGI and Executive Editor of GigaScience.

Additional information:

Pensoft and the Natural History Museum London have received financial support by the EU FP7 projects ViBRANT and pro-iBiosphere. The China National GeneBank (CNGB) and GigaScience teams have received support from the BGI. The DNA barcodes were obtained through the International Barcode of Life Project supported by grants from NSERC and from the government of Canada through Genome Canada and the Ontario Genomics Institute.

Original Sources:

Stoev P, Komerički A, Akkari N, Shanlin Liu, Xin Zhou, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Faulwetter S, Smith V, Penev L (2013) Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. Biodiversity Data Journal 1: e1013. DOI: 10.3897/BDJ.1.e1013

Edmunds SC, Hunter CI, Smith V, Stoev P, Penev L (2013) Biodiversity research in the "big data" era: GigaScience and Pensoft work together to publish the most data-rich species description. GigaScience 2:14 doi:10.1186/2047-217X-2-14

Watch the 3D cybertype video: http://www.youtube.com/watch?v=vqPuwKG8hE4&feature=em-upload_owner

Advanced Open Access publishing model

Thu, 24 Oct 2013 14:45:00 +0300

The Biodiversity Data Journal goes beyond the basics of the Gold Open Access

There are two main modes of open access publishing – Green Open Access, where the author has the right to provide free access to the article outside the publisher's web site in a repository or on his/her own website, and Gold Open Access, where articles are available for free download directly from the publisher on the day of publication.

Opening of content and data, however does not necessarily mean "easy to discover and re-use". The Biodiversity Data Journal proposed the term "Advanced Open Access" to describe an integrated, narrative (text) and data publishing model where the main goal is to make content "re-usable" and "interoperable" for both humans and computers.

To publish effectively in open access, it is not sufficient simply to provide PDF or HTML files online. It is crucial to put these under a reuse-friendly license and to implement technologies that allow machine-readable content and data to be harvested and collated into a big data pool.

The Advanced Open Access means:

Free to read
Free to re-use, revise, remix, redistribute
Easy to discover and harvest
Content automatically summarised by aggregators
Data and narrative integrated to the widest extent possible
Human- and computer-readable formats
Community-based, pre- and post-publication peer-review
Community ownership of data
Free to publish or at low cost affordable by all

BDJ shortens the distance between "narrative" (text) and "data" publishing. Many data types, such as species occurrences, checklists, measurements and others, are converted into text from spreadsheets for better readability by humans. Conversely, text from an article can be downloaded as structured data or harvested by computers for further analysis.

"Open access is definitely one of the greatest steps in scientific communication comparable to the invention of the printing technology or the peer-review system. Great but not sufficient!" said Prof. Lyubomir Penev, founder of Pensoft Publishers and the Biodiversity Data Journal. "We need to switch the focus already from making content 'available for free download' to being discoverable and extractable. Such re-usability multiplies society's investment in science".

###

Additional information:

The Biodiversity Data Journal is designed by Pensoft Publishers and was funded in part by the European Union's Seventh Framework Program (FP7) project ViBRANT.

Source: Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995

FishBase and Fish Taxonomy Training Course 2014: Call for Traineeship

Fri, 11 Oct 2013 10:39:59 +0300

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase programme, the RMCA has five grants available for a 3-month training programme in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

A detailed explanation of FishBase in all its aspects;
A training in the taxonomy of African fishes; and
A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

The main focus of the training is on fish biodiversity data and their integration into FishBase, and on how to use and contribute data to FishBase. The context of these contributions may vary and can also include the knowledge on common names, fish ecology, fisheries statistics, aquaculture and many other areas of fish biology.

After the training, the participants should be able to make their own contribution to fish biology and continue to work on FishBase. They are encouraged to teach their newly apprehended skills to new/local users, to help in completing the database and keeping it up to date, and to spread the use of FishBase as a source of information and a fisheries tool.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium).

To apply for traineeship and for more information, go to:
http://www.africamuseum.be/research/collaborations/training/group?set_language=en&cl=en

Please note that for 2014, this course will be given in French only.

Contact: Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be)

Horizon 2020: A call to forge biodiversity links

Thu, 10 Oct 2013 15:09:00 +0300

A correspondence item, published today, 10 Oct 2013, in Nature focuses on the upcoming calls for Horizon 2020 research funding. The European Commission has said that it would prefer bids from open, collaborative consortia rather than the competitive bids seen in previous funding programmes. The authors call for an effort to forge interdisciplinary links in biodiversity research, and ask readers to contribute to discussions on project ideas.

For more information read the full correspondence item in Nature: http://www.nature.com/nature/journal/v502/n7470/full/502171d.html

2014 SCIENCE POLICY SYMPOSIUM to support the implementation of the 2020 Biodiversity strategy and the EU Water Framework Directive

Thu, 10 Oct 2013 10:03:00 +0300

The 2014 SCIENCE POLICY SYMPOSIUM to support the implementation of the 2020 Biodiversity strategy and the EU Water Framework Directive will be held between 29-30 Jan 2014 in the Museum of Natural Sciences (RBINS), Brussels. The symposium is jointly organised by the EU FP7 funded projects BioFresh and REFRESH.

Numerous EU biodiversity and water related policies have been designed to protect freshwater ecosystems and ensure their sustainable use. However, major challenges still persist in the implementation of these policies. Freshwater ecosystems support 10% of all animal species on Earth and provide a diverse array of functions and services that contribute to human well-being. In recent decades global freshwater biodiversity has declined at a greater rate compared to terrestrial and marine ecosystems.

The Science Policy Symposium for Freshwater Life is organised with the aim of bringing together policy makers and stakeholders from the water, energy and conservation sector, NGOs, the scientific community and selected experts to discuss challenges to implementing the 2020 Biodiversity strategy and the EU Water Framework Directive.

Contact: waterlives.commitee@freshwaterbiodiversity.eu

New framework to deliver biodiversity knowledge

Wed, 02 Oct 2013 13:57:00 +0300

Global Biodiversity Informatics Outlook sets out key steps to harness IT and open data to inform better decisions

Copenhagen, Denmark – A new initiative launched today (2 Oct) aims to coordinate global efforts and funding to deliver the best possible information about life on Earth, and our impacts upon it.

The Global Biodiversity Informatics Outlook sets out a framework to harness the immense power of information technology and an open data culture to gather unprecedented evidence about biodiversity and to inform better decisions.

The framework is outlined in a document and website entitled Delivering Biodiversity Knowledge in the Information Age, inviting policy makers, funders, researchers, informatics specialists, data holders and others to unite around four key focus areas where progress is needed.

The focus areas, each consisting of several specific components, are:

Culture – promoting practices and infrastructure for sharing data, using common standards and persistent archives, backed up by strong policy incentives and a community of willing specialists;
Data – addressing the need to transform all data about species, past and present, into usable and accessible digital formats; from historic collections and literature to citizen science observations, remote sensors and gene sequencing;
Evidence – organizing and assessing data from all sources to provide clear, consistent views giving them context; including taxonomic organization, integrated occurrences in time and space, capturing information about species interactions, and improving data quality through collaborative curation; and
Understanding – building models from recorded measurements and observations to support data-driven research and evidence-based planning, including predictive tools, better visualization and feedbacks to prioritize new data capture.

The document is being promoted through a number of upcoming events this month, including the Governing Board of the Global Biodiversity Information Facility and the Subsidiary Body on Scientific, Technical and Technological Advice of the Convention on Biological Diversity (CBD SBSTTA) where it forms part of the discussion on meeting global targets to end biodiversity loss.

The framework arose from the Global Biodiversity Informatics Conference which gathered around 100 experts in Copenhagen in July, 2012, to identify critical questions relating to biodiversity and tools needed answer them. Workshop leaders at that conference went on to draw up and author the current document.

The Global Biodiversity Informatics Outlook includes examples of projects and initiatives contributing to its objectives, and the accompanying website www.biodiversityinformatics.org invites feedback from others wishing to align their own activities to the framework.

A deck of slides for presentations about GBIO is available at http://www.slideshare.net/GBIF/global-biodiversity-informatics-outlook

The Biodiversity Data Journal: Readable by humans and machines

Tue, 17 Sep 2013 15:31:00 +0300

The Biodiversity Data Journal (BDJ) and the associated Pensoft Writing Tool (PWT), launched on 16th of September 2013, offer several innovations - some of them unique - at every stage of the publishing process. The workflow allows for authoring, peer-review and dissemination to take place within the same online, collaborative platform.

Open access to content and data is quickly becoming the prevailing model in academic publishing, resulting in part from changes to policies of governments and funding agencies and in part from scientist's desire to get their work more widely read and used. Open access benefits scientists with greater dissemination and citation of their work, and provides society as a whole access to the latest research.

To publish effectively in open access, it is not sufficient simply to provide PDF files online. It is crucial to put them under a reuse-friendly license and to implement technologies that allow machine-readable content and data to be harvested by computers that can collate small scattered data into a big pool. Analyses and modelling of community-owned big data are the only way to confront environmental challenges to society, such as climate change, ecosystems destruction, biodiversity loss and others.

Manuscripts are not submitted to BDJ in the usual way, as word processor files, but are written in the online, collaborative Pensoft Writing Tool (PWT), that provides a set of pre-defined, but flexible article templates. Authors may work on a manuscript and invite external contributors, such as mentors, potential reviewers, linguistic and copy editors, and colleagues, who may read and comment on the text before submission. When a manuscript is completed, it is submitted to the journal with a simple click of a button. The tool also allows automated import of manuscripts from data management platforms, such as Scratchpads.

"This is the first workflow ever to support the full life cycle of a manuscript, from initial drafting through submission, community peer-review, publication and dissemination within a single, online, collaborative platform. By publishing papers in all branches of biodiversity science, including novel article types, such as data papers and software descriptions, BDJ becomes a gateway for either large or small data into the emerging world of "big data", said Prof. Lyubomir Penev, managing director and founder of Pensoft Publishers.

BDJ shortens the distance between "narrative (text)" and "data" publishing. Many data types, such as species occurrences, checklists, measurements and others, are converted into text from spreadsheets into a human-readable format. Conversely text from an article can be downloaded as structured data or harvested by computers for further use.

A novel community-based peer-review provides the opportunity for a large number of specialists in the field to review a manuscript. Authors may also opt for an entirely public peer-review process. Reviewers may opt to be anonymous or to disclose their names. Editors no longer need to check different reviewers' and author's versions of a manuscript because all versions can be consolidated into a single online document, again at the click of a button.

"The Biodiversity Data Journal is not just a journal, not even a data journal in the conventional sense. It is a completely novel workflow and infrastructure to mobilise, review, publish, store, disseminate, make interoperable, collate and re-use data through the act of scholarly publishing!" concluded Dr Vincent Smith from the Natural History Museum in London, the journal's Editor-in-Chief.

The platform has been designed by Pensoft Publishers and was funded in part by the European Union's Seventh Framework Program (FP7) project ViBRANT.

###

Original Source

Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995

Memorandum of Understanding signed at Bioinformatics Horizon Conference in Rome

Tue, 10 Sep 2013 10:26:00 +0300

At the Bioinformatics Horizon 2013 Conference (3 - 6 September 2013, Rome) a Memorandum of Understanding was signed between PESI and EU BON. Christoph Häuser, on behalf of EU BON and Yde de Jong on behalf of PESI (see picture below), signed the document to strengthen the cooperation and formalise the integrating efforts of the European species infrastructures.

PESI is now a new associate partner of EU BON, a consortium with currently 30 partners from 18 countries. One of the common aims of EU BON and PESI will be to establish and sustain standard taxonomies for Europe. EU BON will support the PESI backbone developments, including its components, with a focus on Fauna Europaea and Euro+Med. Besides analyzing current gaps, new ideas will be developed to trigger expert involvement and enhance the data management systems.

In a side-meeting at BIH 2013, some ideas were discussed with available EU BON and PESI partners. Important steps will be taken to secure the sustainability of databases and expertise networks combined with the development of technical innovations for users and stakeholders and to promote the implementation of PESI as a European (INSPIRE) standard. It will be also important to further integrate the huge expertise networks, outreach to PESI Focal Points and expand the geographical scope. Furthermore, it will be important to integrate additional data types and data-resources.

Post-doctoral positions on biodiversity scenarios open at Ecoland

Fri, 30 Aug 2013 17:04:00 +0300

POST-DOCTORAL POSITIONS ON BIODIVERSITY SCENARIOS IN EUROPE OPEN AT CTFC

Two positions to conduct post-doctoral research are open at CTFC for one to two years (with the possibility of an extension) in the context of the two FP7- European projects "EUBON - Building the European Biodiversity Observation Network", and "TRUSTEE, Towards RUral Synergies and Trade-offs between Economic development and Ecosystem services".

Application deadline: September 15^th 2013

For further information and application, please see: http://biodiversitylandscapeecologylab.blogspot.co.uk/2013/08/post-doctoral-positions-on-biodiversity.html

FISHBASE and SEALIFEBASE Mirror Updates

Fri, 26 Jul 2013 09:33:30 +0300

ANNOUNCEMENT: The June 2013 update of the FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org/) websites are now available online.

FishBase Stats to date: 32500 Species, 299700 Common names, 52500 Pictures, 48700 References, 2010 Collaborators, 700000 Visits/Month

SealifeBase stats to date: 125800 Species, 27200 Common names, 11100 Pictures, 17800 References, 250 Collaborators

Call for Conference Proposals

Tue, 23 Jul 2013 16:10:00 +0300

The European Science Foundation invites researchers to submit proposals for high-level research conferences to take place in 2015 within the framework of its Research Conferences Scheme in the following scientific domain:

* Molecular Biology+

In the framework of their partnership, ESF and EMBO jointly fund multidisciplinary conferences to promote links between molecular biologists and other scientists in Europe, giving them an opportunity to discuss common themes and exchange cross-disciplinary results.

Successful proposals will be organised within the framework of the ESF Research Conferences Scheme and will be awarded a conference grant of up to EUR 30.000.

Submission deadline: 1 October 2013

Further information can be found at: www.esf.org/serving-science/conferences/call-for-conference-proposals.html

Pan-European stakeholder consultation on the intersessional process of IPBES

Mon, 22 Jul 2013 19:38:00 +0300

From 16^th to the 18^th of July, a European stakeholder consultation for the Intergovernmental Platform on Biodiversity & Ecosystem Services (IPBES) took place in Leipzig (Germany). The consultation was organized by three European Biodiversity Platforms: Network-Forum Biodiversity Research Germany (NeFo), the Belgian Biodiversity Platform, and the French Foundation for Research on Biodiversity (FRB) (further information on the conference: www.biodiversity.de/index.php/de/ipbes/nefo-aktivitaeten-zu-ipbes/workshops/pan-european-stakeholder-consultation).

IPBES will greatly influence future biodiversity policy and research, and EU BON is expected to provide a European contribution to IPBES. IPBES will be in particular of high interest, because it will need tools to integrate and analyse different data sources, to develop relevant infrastructure and to do assessments of state and trends of biodiversity at multiple scales.

EU BON was represented by several partners at the meeting and we acted as facilitators in the round-tables, gathered input for the project, participated in discussions and exchanged ideas with many representatives and colleagues. We provide you with a short summary of the meeting below.

The aims of the pan-European stakeholder consultation meeting in Leipzig were:

To reach out to stakeholders to inform people and institutes and to raise awareness of the dynamics in IPBES.
To discuss and obtain feedback on several IPBES-related documents that are currently being drafted. In their final form these documents will be submitted to the Panel for the IPBES 2 plenary session in 9-14 December 2013.

The meeting in Leipzig was organized around round table discussions of several draft documents of importance for stakeholders: the draft work programme, the stakeholder engagement strategy draft and the draft "Vision for pan-European IPBES support perspective". If you are interested these documents, currently for review, can be found here: http://www.ipbes.net/intersessional-process/current-review-documents-ipbes2.html .

There were several opportunities for EU BON partners to flag the potential biodiversity data and analysis requirements for the future IPBES work program in separate discussions and to give recommendations as to what should be additionally integrated in the draft work programme.

We also brainstormed on a potential EU BON side event at the second IPBES meeting, which will be held in 9-14 December in Antalya, Turkey. Topics discussed by national delegates in that plenary will amongst other topics comprise: the first work programme, budget, stakeholder engagement, the position of observers, technical requirements and a list of thematic priorities for IPBES assessments.

Although the meeting was a success in terms of the number and diversity of participants, the consultation felt for many participants as a top down exercise. However, the importance of being involved at this stage was felt and the hope for stakeholder empowerment in the future was often voiced.

GEO Exhibition - First Announcement

Fri, 19 Jul 2013 18:05:00 +0300

The GEO-X and GEO 2014 Ministerial Summit, as well as all the associated meeting and events will take place at the International Conference Center in Geneva – CICG, from 13 to 17 January 2014.

The Exhibition represents a key component of a successful week and Summit, providing tangible examples of GEO achievements, and informed decision-making.

This First Announcement is intended to provide basic information to potential exhibitors and to collect expressions of interest in participating at the GEO 2014 Summit Exhibition.

43rd Annual Meeting of the Ecological Society of Germany, Austria and Switzerland

Fri, 19 Jul 2013 17:09:00 +0300

In 2013, the University of Potsdam will host the 43rd Annual Meeting of the Ecological Society of Germany, Austria and Switzerland. The meeting (www.gfoe-2013.de) will take place from September 9 to 13, 2013 in Potsdam, Germany.

The guiding theme of the 43rd Annual Meeting is "Building bridges in ecology - linking systems, scales and disciplines".
Along the lines of this guiding theme, we will stimulate scientific discussions about all aspects in basic and applied ecological research contributing to better connect.

Handling "big data" is no small feat

Wed, 17 Jul 2013 16:05:00 +0300

Policy-makers and science and industry representatives are discussing how to make large amounts of Earth observation data accessible to a wider user community. To explore this idea, some 250 science, industry and policy-making representatives and national delegates from Europe, the US, Australia, China and Africa met at ESA’s ESRIN centre in Frascati, Italy last week for ESA’s first ‘Big Data from Space’ event.

Representatives from ESA and NASA opened the event together with the European Commission. European Commission Directorates-General for Enterprise and Industry, Research and Innovation and Communications Networks, Content and Technology, along with representatives from the European Environment Agency, the National Oceanic and Atmospheric Administration and the Open Geospatial Consortium acted as session chairs.

Javier de la Torre, representing the EU BON partner Vizzuality gave a presentation 'Global Deforestation through Timeme: Big Data Meets Scalable Visualizations,' which included some of the work Vizzuality is doing toward the EUBON project.

The event concluded with a strong call by all parties for the ability to handle and use big Earth observing data. This could potentially open new opportunities for research and international cooperation schemes such as programmatic and industrial coordination.

Biology must develop its own big-data systems

Mon, 15 Jul 2013 16:54:00 +0300

Too many data-management projects fail because they ignore the changing nature of life-sciences data, argues John Boyle.

From: Nature/Column: World View

The last week of April was designated Big Data Week. But in modern biology, every week is big-data week: life-sciences research now routinely churns out more information than scientists can analyse without help. That help increasingly comes in the form of expensive data-management systems, but these are hard to design and most are even harder to use. As a result, a long line of data-management projects in the life sciences — many of which I have been involved with — have failed.

The size, complexity and heterogeneity of the data generated in labs across the world can only increase, and the introduction of cloud computing will encourage the same mistakes. Just a stone's throw from where I work, at least three computer companies are already touting cloud-based data-management systems for the life sciences. We need to find ways to manage and integrate data to make discoveries in fields such as genomics, and we need to do this quickly.

At their most basic, data-management systems allow people to organize and share information. In the case of small amounts of uniform data from a single experiment, this can be done with a spreadsheet. But with multiple experiments that produce diverse data — on gene expression, metabolites and protein abundance, for example — we need something more sophisticated.

An ideal data-management system would store data, provide common and secure access methods, and allow for linking, annotation and a way to query and retrieve information. It would be able to cope with data in different locations — on remote servers, on desktops, in a database or spread across different machines — and formats, including spreadsheets, badly named files, blogs or even scanned-in notebooks.

Read the full article here.

Origial Source: Nature 499, 7 (04 July 2013) doi:10.1038/499007a

Essential Biodiversity Variables - Have your say!

Fri, 05 Jul 2013 13:35:00 +0300

The Group on Earth Observations Biodiversity Observation Network (GEO BON) is leading the development of a set of Essential Biodiversity Variables (EBVs), akin to the GCOS Essential Climate Variables (ECVs).

The recently published paper (Science 339, 18 January 2013) describing the EBV concept states that: "Reducing the rate of biodiversity loss and averting dangerous biodiversity change are international goals, reasserted by the Aichi Targets for 2020 by Parties to the United Nations (UN) Convention on Biological Diversity (CBD).… However, there is no global, harmonized observation system for delivering regular, timely data on biodiversity change." Read Full Paper and supplementary materials on EBVs here.

GEO BON partners are thus developing (and seeking consensus around) EBVs that could form the basis of monitoring programs worldwide. For more information on EBVs please click here.

GEO BON invites anyone who would like to get involved in EBV development, to take the EBV survey which will run till 31 August 2013. The survey will help us gauge how respondents feel about current candidate EBVs and provides respondents with the opportunity to make suggestions for new/alternative EBVs. Complete survey now!

Postdoctoral position on species and population dynamics at Doñana Biological Station (EBD-CSIC), Spain

Fri, 05 Jul 2013 11:39:00 +0300

Funded by the "Severo Ochoa" Excellence Program awarded by the Spanish Ministry of Economy and Competitiveness, the Doñana Biological Station (www.ebd.csic.es) seeks a Postdoctoral fellow for two-years with a potential extension of one year with the aim of analyzing temporal trends of species distribution and abundance in the Doñana natural area (SW Spain), and their relation with environmental pressures such as climate change, land-use change, and water quality.

Period for application: From 5^th July to 5^th August, 2013.

For more information please see the pdf file below.

The BioFresh Blog - Perspective: Martin Sharman on ethics and the ecosystem services paradigm

Wed, 03 Jul 2013 11:18:00 +0300

In this guest post Martin Sharman opens up a rich area of debate by arguing that as a policy concept, ecosystem services puts human wants first and foremost and undermines moral-aesthetic value arguments for conservation that are widely held in society. Martin was the policy offer responsible for biodiversity and ecosystems in the European Commission’s DG Research & Innovation up until his retirement last November. During his career he made an enormous contribution to biodiversity research and policy, including the initiation of the BioFresh project. The opinions expressed in this post are, of course, his own and are not intended to represent a position of either the Commission or BioFresh.

A "resource" is something that is useful to someone. A "natural resource" is something in the natural environment that a human can use to satisfy want or increase wellbeing.

To adopt this vocabulary is to adopt a forthright utilitarian view of the natural environment, and implicitly to accept that human benefit is the only good. Not only is human benefit the only good, but it is quantifiable – for if not, then we can never agree on what constitutes a resource, or who has the greater right to it. Thus someone who speaks of natural resources accepts, again implicitly, that happiness and wellbeing can be quantified. The vocabulary also requires that this quantified human benefit remains, if not constant, then comparable over cultures and generations.

More than this: the wellbeing of the "resource" is insignificant. It is only by setting concern for the wellbeing of the resource to zero that one can regard it as merely something to satisfy human want. Human benefit is the only good. This is the First Commandment; in the limpid words of the King James version of the bible, thou shalt have no other gods before me.

In this observation lies much of the moral argument against the concept of ecosystem services: just as oranges are not the only fruit, so humans are not the only species.

The concept of ecosystem services is one thing; the premise of its proponents is another. It is, in short, that conservation based on intrinsic value of biodiversity has failed to stop the loss of species, ecosystems, and the complex web of interactions between them. Since an ethical argument has failed, then we should try self-interest. By demonstrating that human wellbeing is increased by the services rendered by ecosystems, we can motivate people to protect the source of the service – biodiversity.

We know that conservation is not working because we continue to lose biodiversity. Oh yeah? This is the equivalent of me deciding that my accelerator is not working because my car is losing speed. Why is such a daft non-sequitur accepted by otherwise intelligent people? You immediately thought of many reasons my car might be losing speed – I have the brakes on, I’m going up a hill, I’ve run out of fuel, I’ve run into sand, I’ve hit an oncoming truck. The obvious reason that we are losing biodiversity is the memento mori that stares at us from our looking glass – biodiversity loss is the inevitable result of our debt-based economic system and our swelling population’s unsustainable demands on nature. We all know that. Why do we mutely accept the dangerously diversionary nonsense that "biodiversity is being lost because conservation is not working"?

Ecosystem services takes the utilitarian logic of natural resources one important step further. A "service" by definition benefits humans. If we are to protect services only if they benefit humans, then what happens to the useless ecosystems? Are they simply to be cemented over?

I recently heard a discussion in which one person said "most people are useless", meaning that they are surplus to requirement. The outrage that this provoked was spearheaded by someone saying that you can never prove that anyone is useless, because you can never know enough about their contribution to their social fabric. So does this mean that you can never show that an ecosystem is useless? If so that leaves the ecosystem services argument saying that because some ecosystems benefit humans, we have to protect every ecosystem.

Which may be the right answer, but why reach it by such objectionable means?

For those of us with a reverence of nature, the ecosystem services rhetoric and mindset are abhorrent, being fundamentally immoral and unethical. They take the most ecologically damaging invasive species in the history of life, and place it above all other species on Earth. They cast all other – voiceless – species in the role of consumables. This mindset might have worked for Homo habilis. It will not work for Homo sapiens.

Martin Sharman for the BioFresh Blog: http://biofreshblog.com/2013/07/03/perspective-martin-sharman-on-ethics-and-the-ecosystem-services-paradigm/

Job Alert: Research Associate - Linking Biodiversity Data to Policy, University of Cambridge

Tue, 02 Jul 2013 17:12:00 +0300

The University of Cambridge invites for applications for a Research Associate to work on EU-BON, a major EU-funded research project seeking to improve the use of biodiversity data in public policy.

Applicants should have a PhD in a relevant social science or conservation science. Experience in both qualitative and quantitative analysis is desirable. Applicants should ideally have some first-hand experience of public policy processes and a willingness to travel within the European Union for research. Excellent organisational and communication skills will be essential in working as a successful part of this large, multi-partner and multinational team.

The researcher will carry out research on how biodiversity data is currently used in European policy making and will contribute to analysis of the opportunities to increase its effective provision and use. Research methods are likely to combine qualitative and quantitate analysis and to focus on the use of biodiversity data in public policy contexts. It is expected that some of the research will take place in Brussels. The researcher will have considerable freedom in defining the research project in discussion with Dr Doubleday and Prof Sutherland. In addition to carrying out research on the use of biodiversity data in European policy making, the researcher will support Cambridge's contribution to EU BON as a whole. This will involve contributing to other workpackages as and when required. More information about EU BON can be found here: http://www.eubon.eu

Fixed-term: The funds for this post are available for 36 months in the first instance.

Completed applications consisting of a CHRIS/6 (Parts I & III) (downloadable from http://www.admin.cam.ac.uk/offices/hr/forms/chris6/) a covering letter, and CV, should be sent to Danielle Feger, via email: geogrec@hermes.cam.ac.uk or sent to Research Administrator, Department of Geography, Downing Site, Cambridge, CB2 3EN

Please quote reference LC01355 on your application and in any correspondence about this vacancy.

Any enquiries concerning the position can be made to Dr Robert Doubleday, rob.doubleday@csap.cam.ac.uk

For more information about the position, please visit: http://www.jobs.cam.ac.uk/job/1611/

"Biodiversity and Integrated Environmental Monitoring": A new book explores the challenges in front of biodiversity data management and implementation in the future

Thu, 27 Jun 2013 13:24:00 +0300

The Brazilian initiative PPBio (The Program for Research on Biodiversity) launches a new book based on over a decade of experience in implementing the biodiversity monitoring system RAPELD in the Brazilian Amazon. Richly illustrated and written in simple language, the book "Biodiversity and Integrated Environmental Monitoring" addresses the issues that led to the system development, covering topics such as the spatial organization and representation of biological diversity, environmental monitoring, and data management.

Monitoring of biodiversity is not merely an academic endeavor. Although scientific aspects such as representation of biodiversity and biodiversity data integration, management and preservation are of a great importance, it is also essential to think about the political context in which decisions will be made and how to incorporate political stakeholders and decision makers.

"As this important book makes clear questions about biodiversity are far from purely scientific. Biodiversity matters. Our needs to assess it embed in a complex of questions posed by managers, policy makers and those who live in or otherwise benefit from biodiversity.", explains Dr Stuart L. Pimm in the preface of the book. "So how do we ensure that data collected now will be useful for purposes we cannot yet imagine at some unexpected time in the future? Or provide comparison to some other place that we might survey some day?"

Those and many more questions regarding biodiversity data management and policy involvement are discussed in the new book "Biodiversity and Integrated Environmental Monitoring".

The First EU BON stakeholder roundtable: What policy needs

Wed, 26 Jun 2013 18:12:00 +0300

The first EU BON Stakeholder Round Table was held on 18 June 2013 at the Leibniz Association in Brussels, under the motto "Requirements for Policy".

Important topics regarding biodiversity information were discussed with political stakeholders and a variety of valuable recommendations were given for the future process of EU BON. Among the participants were members of the European policy, representatives of recent European biodiversity projects and EU BON members. At the round table, intensive discussions took place regarding what biodiversity policy needs, like which indicators and measurements are needed to answer burning policy questions. Suggestions were made to formalize Essential Biodiversity Variables (EBV’s) and Aichi targets. A future approach was set towards producing a guideline and timeline for indicators that should be established within EU BON.

The challenges of future research policy were also discussed and the collaboration of EU BON with the Group on Earth Observations (GEO) will be a substantial part of the continuous contributions to the global process. EU BON should also serve as a showcase for the European Commission in this respect. EU BON will also be responsible for answering crucial questions regarding data policy, e.g. how to establish a general repository for a long-lasting storage of data and how to handle ‘big data’. Another future task will be to integrate EU relevant projects and initiatives and their data portals, datasets and metadata.

At the round table it was also discussed how public stakeholders can be involved in the future, particularly citizen scientists, so that they could be integrated in EU BON and provide useful information for scientists and researchers.

Among the participants were representatives of major biodiversity stakeholders including Gilles Ollier, Jane Shiel and Sofie Vandewoestijne - European Commission, DG Research and Innovation; Anne Teller - European Commission, DG Environment; Georgios Sarantakos - GEO Secretariat; Cigdem Adem - European Environment Agency; representatives of recent European biodiversity projects (FunDiv, BioFresh, STEP and INSPIRE) and EU BON members.

Presentations:

1_Häuser_EU_BON_biodiversity data.pdf (1.7MB)

2_Verheyen_FunDivEUROPE.pdf (793KB)

3_Freyhof_BioFresh.pdf (1.0MB)

4_Penev_STEP.pdf (890KB)

5_May_INSPIRE.pdf (1.1MB)

6_Galbusera_ConGRESS.pdf (2.8MB)

7_Köljag_EU BON gap analyses.pdf (379KB)

8_Secades_biodiversity indicators.pdf (1.1MB)

9_Sarantakos_GEO.pdf (1.2MB)

10_Teller_EU 2020.pdf (556KB)

11_Runnel_EU BON Citizen Science perspectives.pdf (326KB)

12_Adem_EEA and Citizen Science.pdf (2.0MB)

13_Mergen_EU-BON Biodiversity Portal.pdf (204KB)

EU BON_minutes_Stakeholder Meeting v7.pdf (479KB)

Improved flow of European biodiversity data

Thu, 20 Jun 2013 14:05:00 +0300

The Norwegian Biodiversity Information Centre (NBIC) was host to an international biodiversity informatics workshop May 29^th-31^st. The event was held as part of the EU-project European Biodiversity Observation Network (EU BON), where NBIC is a partner.

The theme for the ‘EU BON Initial Informatics Workshop’ was data architectures, standards and interoperability (improving flow of information between systems). The event gathered renowned international and national experts within data structures for biological data.

EU-project for better data flow
NBIC is the Norwegian partner in EU BON, an EU-project spanning 5 years where 30 institutions from 18 countries contribute. The objective is to build an infrastructure that improves the flow of biodiversity data in all of Europe. Furthermore, the project is a European affiliate to its global counterpart (GEO BON) and will contribute to the work of the newly established ‘Intergovernmental Platform on Biodiversity and Ecosystem Services’ (IPBES).

Good solutions showcased
Worldwide, a large number distinct standards and solutions for management of data on species and nature types exist, and one of EU BON’s objectives is to find solutions to get all of these systems to communicate with one another. Several attendees contributed with presentations highlighting diverse standards and solutions for interoperability. Additionally, four international players in the field of biodiversity informatics presented general international initiatives, projects and services relevant to EU BON.

What is biodiversity informatics?
Biodiversity informatics is the field of applying IT techniques to improve management and presentation of biodiversity information, making it easier to discover, use and analyze such data.

EUBrazilOpenBio announces 2 new training tools covering Ecological Niche Modeling and Cross-mapping

Mon, 17 Jun 2013 14:48:00 +0300

The EUBrazilOpenBio project announces two new training tools as a part of its e-training Programme aiming at educating and enabling current and potential users of EUBrazilOpenBio to unlock new knowledge and shape effective policy on biodiversity challenges. The new tools cover the following use cases: Ecological Niche Modeling and Cross-mapping.

The EUBrazilOpenBio anytime, anywhere eTraining tools are designed for researchers in the spheres of Biodiversity, Life science, Climate Change, application Developers as well as regulatory authorities and policy decision-makers.

EUBrazilOpenBio is focused on tackling the complexity of biodiversity science such as the diversity of multidisciplinary datasets spanning from climatology to earth sciences by integrating advanced computing resources with data sources across Europe and Brazil.

For more informationand to try out the new tools click here.

The First EU BON stakeholder roundtable

Wed, 12 Jun 2013 17:09:00 +0300

The first EU BON Stakeholder Round Table is now approaching. The workshop will take place in Brussels on 18 June 2013 and be hosted by the Leibniz Association. A main obstacle to reach the 2010 biodiversity goals and to implement the European Biodiversity Strategy is the lacking integration of biodiversity aspects into political, economic, and management decisions in different sectors mainly due to knowledge gaps. The aim of the 1-day workshop will be to identify existing gaps, determine current needs regarding biodiversity information and develop solutions to overcome the existing knowledge gaps within the EU BON project.

EU BON will provide access to biodiversity information that is reliable, relevant, up-to-date, and publicly available. In the first Stakeholder Round Table, the EU BON approach for establishing a European Biodiversity Observation Network will be outlined. Based on that introduction, existing approaches that compile biodiversity or biodiversity-relevant data and the possible synergies and possible contributions to EU BON will be discussed. Another important aspect of the meeting will be to highlight the link to policy and governments of the European Union and their specific needs regarding biodiversity information.

Results of this first stakeholder round table will be documented and passed back to the project in order to increase its relevance. Next stakeholder round tables can be used to evaluate the progress of the project with regard to serving the demands of EC, EEA, GEO BON, IPBES, JRC and other stakeholders.

Initial Informatics Workshop: plans and actions for the future

Wed, 12 Jun 2013 16:13:00 +0300

The first Informatics Workshop of the EU-FP7 funded project EU BON was held on 29-31 May 2013 in Trondheim, Norway. The meeting was hosted by the EU BON partner Norwegian Biodiversity Information Centre (NBIC). The aims were to highlight the link to infrastructures and processes like GEOSS or DataONE and to discuss the data standards and informatics architecture that will be followed by the EU BON project.

During the three-days of the workshop, the participants of the meeting discussed the important aspects regarding the informatics architecture and decided on the next steps to develop a new open-access platform for sharing biodiversity data and tools in order to advance the European biodiversity knowledge. On the first day, the aim was to highlight the link of EU BON with GEOSS, GEO BON and other processes like DataONE to find synergies and to build on work that was conducted in these processes. On the second day, detailed discussion on the specific tasks of the workgroup took place. The afternoon session was split into 3 different tracks where issues like architectural design, review and guidelines for using data standards, the design of monitoring sites and the gap analysis of existing biodiversity data were analyzed and discussed.

It was agreed that a new platform is needed which should be built on existing solutions. Thus, the platform will use the technical solutions of the DataONE network that will be adjusted to the specific needs of the EU BON project. EU BON Partners will implement DataONE Member Nodes to start the process and a DataOne coordinating node may be established towards 2015. Furthermore, it was also decided to join and support the GEO BON Working Group pilot project on automating the data flows for the Essential Biodiversity Variables.

Biodiversity databases: language and location help explain biases

Fri, 07 Jun 2013 13:55:00 +0300

Science for Environment Policy features a policy brief explaining the biases around biodiversity databases in their latest issue 331, from 6 June 2013. "Biodiversity databases: language and location help explain biases" features a new study arguing that low numbers of English speakers, large distances from the database host and low security acting as key barriers to data collection and among the main reasons for the underrepresentation of some countries in biodiversity databases.

Source: Amano T., Sutherland W.J. (2013) Four barriers to the global understanding of biodiversity conservation: wealth, language, geographical location and security. Proceedings of the Royal Society B. 280: 20122649. doi: 10.1098/rspb.2012.2649

Investing in green infrastructure will bring multiple returns to nature, society and people

Tue, 28 May 2013 17:45:00 +0300

The European Commission adopted a new strategy for encouraging the use of green infrastructure, and for ensuring that the enhancement of natural processes becomes a systematic part of spatial planning. Green Infrastructure is a tried and tested tool that uses nature to provide ecological, economic and social benefits. Instead of building flood protection infrastructure, for example, a green infrastructure solution would be to allow a natural wetland to absorb the excess water from heavy rain.

Green infrastructure is often cheaper and more durable than alternatives provided through conventional civil engineering. Biodiversity-rich parks, green spaces and fresh air corridors can for example mitigate the negative effects of summer heat waves. In addition to the health and environmental benefits, green infrastructure also brings multiple social benefits: it creates jobs and makes cities more appealing places to live and work. And it allows for wildlife to thrive, even in an urban context.

Environment Commissioner Janez Potočnik said: "Building green infrastructure is often a good investment for nature, for the economy and for jobs. We should provide society with solutions that work with nature instead of against it, where that makes economic and environmental sense."

More about the EC Green Infrastructure here: http://ec.europa.eu/environment/nature/ecosystems/index_en.htm

San Francisco Declaration on Research Assessment (DORA) calls for reassessment of the importance of Impact Factor

Fri, 17 May 2013 13:19:00 +0300

The San Francisco Declaration on Research Assessment (DORA) was initiated by the American Society for Cell Biology (ASCB) together with a group of editors and publishers of scholarly journals after a meeting in December 2012 during the ASCB Annual Meeting in San Francisco. The document recognizes the need to improve the ways in which the outputs of scientific research are evaluated.

DORA puts into question the use of Journal Impact Factor as a main tool for assessment, and proposes the consideration of various other factors towards more sophisticated and meaningful approaches. DORA is a worldwide initiative covering all scholarly disciplines.

To read the whole declaration, please follow the link: http://am.ascb.org/dora/

GBIF enables global study of climate impact on species

Wed, 15 May 2013 13:42:00 +0300

Research in Nature Climate Change uses data on 50,000 common plants and animals to predict worldwide range losses without urgent action to limit emissions

Climate change could dramatically reduce the geographic ranges of thousands of common plant and animal species during this century, according to research using data made freely available online through GBIF.
The information on the current location of common species of plants, mammals, birds, reptiles and amphibians was taken from around 170 million individual data records published freely online through GBIF by some 200 different institutions around the world. The records include museum specimens, data from scientific expeditions and the observations of thousands of volunteer ‘citizen scientists’.
One of the co-authors of the study, Jeff Price of the University of East Anglia’s School of Environmental Sciences, United Kingdom, said: "Without free and open access to massive amounts of data such as those made available online through GBIF, no individual researcher is able to contact every country, every museum, every scientist holding the data and pull it all together. So this research would not be possible without GBIF and its global community of researchers and volunteers who make their data freely available."
The lead author of the study, Dr Rachel Warren, also from UEA’s School of Environmental Sciences and the Tyndall Centre, said: "While there has been much research on the effect of climate change on rare and endangered species, little has been known about how an increase in global temperature will affect more common species."Our research predicts that climate change will greatly reduce the diversity of even very common species found in most parts of the world. This loss of global-scale biodiversity would significantly impoverish the biosphere and the ecosystem services it provides. The good news is that our research provides crucial new evidence of how swift action to reduce CO2 and other greenhouse gases can prevent the biodiversity loss by reducing the amount of global warming to 2 degrees Celsius rather than 4 degrees. This would also buy time – up to four decades - for plants and animals to adapt to the remaining 2 degrees of climate change."

DRYAD announces nonprofit sustainability plans

Thu, 09 May 2013 09:59:00 +0300

The data repository invites community input on the future of data archiving at upcoming membership meeting

Dryad, a repository for data underlying the international scientific and medical literature, works with a variety of journals, societies and publishers to archive research data at the time of publication. The project began in 2009 and has published more than 3,000 data packages. In 2012, Dryad incorporated as a nonprofit organization with the mission to make scientific and medical research data permanently available to all researchers and educators free-of-charge without barriers to reuse.
For the past four years, Dryad has worked with its stakeholders to develop a sustainability plan to realize this vision. Central to the sustainability plan is a one-time submission fee that will offset the actual costs of preserving data indefinitely. A variety of pricing plans are available for journals and other organizations such societies, funders and libraries to purchase discounted submission fees on behalf of their researchers. For data not covered by a pricing plan, the researcher will be asked to pay upon submission, with waivers provided to researchers from World Bank low and lower-middle income economies. Submission fees will apply to all new submissions starting September 2013. Dryad will also be supported in part by its membership, by grants for research and innovation, and by donors. Membership in Dryad is open to any organization that supports research and education. Dryad is pleased to include Pensoft Publishers among its Charter Members.
The Dryad Membership meeting, to be held in Oxford, UK on Friday, May 24 is open to members, prospective members, researchers and other interested parties. Attendees will hear about recent and upcoming developments in the repository and the nonprofit organization. In addition, there will be an Emerging Issues Forum with presentations from the community about future directions for Dryad, its members, and partner journals, including models for the technical and peer review of data, ideas for promoting the adoption of data citations, measuring data reuse, funder perspectives on the use of research grants for data management costs and the relevance of larger data networks.
Dryad’s Membership Meeting is part of a series of free public events in Oxford spotlighting trends in scholarly communication with an emphasis on research data, including a Symposium on the Now and Future of Data Publication on Wednesday, May 22nd and an ORCID Outreach Meeting with a special joint Dryad-ORCID Symposium on Research Attribution on Thursday, May 23rd. Registration for these events closes on May 13th. Remote attendance will be available for those unable to attend in person.

For more information about submitting data, becoming a member or the sustainability plan, please visit http://datadryad.org. The website also offers an Ideas Forum where people can make their voice heard by suggesting and voting for new features and offering comments.

CONTACT:
Laura Wendell, Executive Director
lwendell@datadrayd.org
+1-919-668-4005 or +1-919-423-3889

ENVIMPACT CONFERENCE: "Environmental research: Experiences on best practices towards Horizon 2020"

Wed, 08 May 2013 14:15:00 +0300

The "Environmental research: Experiences on best practices towards Horizon 2020" conference will be held the 30th of May 2013 in Brussels at the Museum of Natural Sciences. Organizers of the event are the APRE (Agency for the Promotion of European Research), and the ENVIMPACT consortium.

The event will gather European Commission representatives, researchers, FP7 project's participants, governmental, academic and industrial stakeholders of the Central East European countries with the aim of presenting the current and future tools and trends for dissemination and exploitation of R&D results with a special focus on the thematic areas of research in air pollution, chemical pollution and environmental technologies, especially in the Central-Eastern European (CEE) countries.

The agenda of the conference and the press release are downloadable at the link: http://download.apre.it/envimpact_presskit1.zip

The registration is free, please register at http://www.envimpact.eu/index.cfm?action=article&publication_id=922

ENVIMPACT project has been launched on 1st January 2011. This initiative is funded by the European Commission under FP7, DG Research and Innovation, with the objectives to improve the current communication and dissemination of environmental research results deriving from Central-Eastern European (CEE) countries.

MTSR 2013 : VII Metadata and Semantics Research Conference

Wed, 08 May 2013 12:09:00 +0300

November 19-22, 2013 Alexander Technological Educational Institute of Thessaloniki, Greece

Continuing the successful mission of previous MTSR Conferences (MTSR'05, MTSR'07, MTSR'09, MTSR'10, MTSR'11 and MTSR’12), the seventh International Conference on Metadata and Semantics Research (MTSR'13) aims to bring together scholars and practitioners that share a common interest in the interdisciplinary field of metadata, linked data and ontologies. Participants will share novel knowledge and best practice in the implementation of these semantic technologies across diverse types of Information Environments and applications. These include Cultural Informatics; Open Access Repositories & Digital Libraries; E-learning applications; Search Engine Optimisation & Information Retrieval; Research Information Systems and Infrastructures; e-Science and e-Social Science applications; Agriculture, Food and Environment; Bio-Health & Medical Information Systems.

First EU BON Stakeholder Round Table

Tue, 30 Apr 2013 13:54:39 +0300

A main obstacle to reach the 2010 biodiversity goals and to implement the European Biodiversity Strategy is lacking integration of biodiversity aspects into political, economic, and management decisions in different sectors mainly due to knowledge gaps. EU BON will provide access to sound data sources and scientific knowledge that is reliable, relevant, up-todate, and publicly available. Europe maintains substantial capacities to generate and manage such knowledge and to provide data relevant to assessing and managing our biological resources. These capacities concern research and technology development, tools for information management and infrastructure, and procedures for the development and implementation of well-informed environmental policies.

In order to meet the demands of the main political stakeholders in the EU, in this workshop an overview of the project will be given and first results will be shown summarized in the first show case which is dealing with datasets in relation to political targets and indicators. In addition, the idea how the science–policy/management interface can function for example via the planned European Biodiversity Portal will be presented and the requirements for policy (political administration) discussed.

A new article provides a decadal view on the importance and future of biodiversity informatics

Fri, 19 Apr 2013 11:06:00 +0300

A new article "A decadal view of biodiversity informatics: challenges and priorities" published by BMC Ecology focuses on the challenges and perspectives for biodiversity informatics after a decade of development. The authors Alex Hardisty and Dave Roberts alongside 77 contributions from the biodiversity informatics community share experience and set future directions of biodiversity informatics as a tool for addressing conservation and ecological issues.

Biodiversity informatics plays a central enabling role in the research community's efforts to address scientific conservation and sustainability issues. This community consultation paper positions the role of biodiversity informatics, for the next decade, presenting the actions needed to link the various biodiversity infrastructures invisibly and to facilitate understanding that can support both business and policy-makers. The community considers the goal in biodiversity informatics to be full integration of the biodiversity research community, including citizens’ science, through a commonly-shared, sustainable e-infrastructure across all sub-disciplines that reliably serves science and society alike.

The full text of the article can be accessed here.

The 3rd BioVel newsletter is now available

Thu, 18 Apr 2013 11:24:00 +0300

The newest newsletter of the BioVel project is now available, offering a range of biodiversity related news, including brief coverage of the EU BON Kick-off and International Symposium Workshop in February, 2013. Among the other stories covered are:

Letter from Alex Hardisty, Project Coordinator
Running Workflows Just Got a Whole Lot Simpler
Friends of BioVeL: Friendships and collaborations are also blooming! (featuring news about: LifeWatch-BioVeL cooperation;; i4Life project; Micro B3 and GENSC are now friends of BioVeL.

The newsletter also contains information about the upcoming workflows and research within the project, as well about events planned for the future.

To read the article and find out more about the news stories covered click here.

Job alert: Quantitative Ecologist (Postdoc) (m/f) code digit 37/2013

Thu, 18 Apr 2013 11:11:00 +0300

The Helmholtz Centre for Environmental Research – UFZ is now offering a position for Quantitative Ecologist (Postdoc) in their Department of Conservation Biology. The position is open to both male and female applicants and it runs for 42 months, starting latest on 01.08.2013 in Leipzig, Germany. Salary will be according to the appropriate civil service level TVÖD, salary group 13.

The successful candidate will be focusing on optimizing monitoring designs at different scales under field constraints and assessinguncertainty in biodiversity trend analyses. He/She will have a PhD in an ecological discipline relevant for the research topic (e.g. population biology), excellent statistical and computing skills, a distinguished publication record, experience in international cooperation and strong interest both in theoretical and applied biodiversity conservation. Fluency in English in speech and writing is essential, some knowledge of German is of advantage.

The position will be part of the large-integrating EU-project EU BON "Building the European BiodiversityObservation Network". The overall goal of the project is to integrate and harmonize European data relevant for biodiversity monitoring and to develop prototypes for biodiversity monitoring for the global GEO BON initiative. 30 partner organisations form the EU BON consortium. Within this consortium the applicant will have the following responsibilities:

• on improving current approaches to monitoring species both from a theoretical and a practical perspective, with a focus on population processes

• link trend data to environmental drivers at different scales

• quantify uncertainty across all steps from data collection to interpretation of analysed data

• Contribute to the management of the workpackage "Link environment to biodiversity: Analyses of patterns, processes and trends"

• Contribute to the compilation of information on existing monitoring programs

• Feed results into a science-policy dialogue

• Disseminate results for scientists and applied users

Further Information:

Prof. Dr. Klaus Henle, Tel. ++49-(0)341-235 1270, e-mail: klaus.henle@ufz.de

Please send your application until 19.05.2013 under Code Digit 37/2013 to the Human Resource department of the Helmholtz Centre for Environmental Research, PO Box 500136, 04301 Leipzig, Germany, or by e-mail to application@ufz.de.

For further information please see the attached pdf file below.

First meeting of WP 5 EU BON testing and validation of concepts, tools, and services held

Mon, 15 Apr 2013 17:09:00 +0300

The first meeting of Work Package 5 (EU BON testing and validation of concepts, tools, and services) was held between 2^nd and 4^th April, 2013 in the Doñana Biological Station, in Spain. 23 people from 10 different institutions (7 of the EU BON consortium) worked towards building a draft on Principles and Guidelines for establishing and operating EU BON test sites.

During the meeting the members agreed on starting documenting each of the sites, using a common format to be decided in May on the Informatics Task Force meeting of WP2 (Data integration and interoperability) in Norway. A data inventory will also be built in each of the sites, adding monitoring protocols in stepwise fashion.

In addition the meeting served to get a better view of the variety of Ecosystems in Doñana as well as the monitoring protocols that are being conducted in this area.

Data Papers as Incentives for Opening Biodiversity Data

Mon, 08 Apr 2013 11:26:00 +0300

One year of experience and perspectives for the future from Pensoft Publishers and GBIF

In 2012 GBIF and Pensoft pioneered a workflow between the GBIF’s Integrated Publishing Toolkit (IPT) and Pensoft’s journals ZooKeys, PhytoKeys, MycoKeys, Nature Conservation, etc. to automatically export metadata into the form of a data paper manuscript, based on the Ecological Metadata Language (EML). One year on they share their experience and perspectives for the future of data publishing.

In its essence, a Data Paper is a scholarly journal publication whose primary purpose is to describe a dataset or a group of datasets, rather than to report a research investigation. As such, it contains facts about data, not hypotheses and arguments in support of the data, as found in a conventional research article. The future of data publishing according to Pensoft Publishers and GBIF, lies in the elaborating of formats for descriptions of various kinds of data (ecological, morphological, genomic, environmental, etc.), as well as in linking to various platforms (GBIF, Scratchpads, Dryad, EDIT, CBOL, etc.).

More about the collaboration and experience of Pensoft Publishers and GBIF learn from their joint poster available here.

Make us visible! – take full advantage of the project’s social media

Tue, 02 Apr 2013 15:23:00 +0300

Join the online community of EU BON and create buzz around the project. Take full advantage of our social network channels to interact with stakeholders and contribute to the EU BON discussion. Get an easy access and the latest updates on news and events around the project. You are a click away from making a difference to the project’s visibility.

Like, follow or join EU BON Social Media and get involved in the community now!

	Like us on Facebook • Get the latest news in pictures and videos • Interact and join a community of like-minded supporters • Find out about events and group activities
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Research Data Alliance (RDA) is now launched

Wed, 20 Mar 2013 17:03:40 +0200

The Research Data Alliance (RDA) has been recently launched. Its First Plenary took place between 18-20 March, 2013 in Gothenburg, Sweden. The hot topic of the Plenary was the RDA vision towards open access data without barriers. The 3 days of meetings and working sessions brought the research data community together to contribute and set milestones for the future work of the RDA towards open access data-driven innovation.

Over the last decade, significant investments have been made all over the globe
for developing scientific data infrastructures to support the work of research communities and improving shared access to data. There is a common understanding that solutions must be global and that the development of an integrated and interoperable data domain can only be achieved through increased global cooperation.

As "big data" emerges as an international priority, the Research Data Alliance (RDA) is a newly formed organization whose goal is to accelerate data-driven innovation world-wide through research data sharing and exchange.

At its first Plenary, the RDA was launched by sponsors from the European Commission, the U. S. Government and the Australian Government and leaders in the data community. The Plenary was used as a working meeting to accelerate discussion, Working and Interest Group interaction, and data community development.

ICSU-WDS Data Publication Charter: http://www.icsu-wds.org/working-groups/data-publication

BHL-Europe is finally officially live

Wed, 20 Mar 2013 15:05:00 +0200

On March 18 2013 the BHL-Europe portal has gone officially live. The Biodiversity heritage library for Europe project began in 2009 and joins noteworthy European museum and botanical gardens, including some in the USA as well. The primary goal of the project was to create an indexed archival system for digitized scientific literature, and free access to this literature via a multifunctional portal (www.bhl-europe.eu).
The portal makes available 6,149 books containing one million pages from 92 content providers at the moment, but this is just the initial offering. New material is added every day, and the growth is projected to increase over time. The BHL-Europe portal (and other international sources) is linked to the Biodiversity Library Exhibition platform, which publishes selected literature in the form of interesting themes, information and an attractive design. Thanks to the specific presentation of literature and interesting scientific items, the platform has significant educational potential.

You can access the BHL-Europe portal here: www.bhl-europe.eu
Read more about the portal on the official BHL blog: http://bhleurope.blogspot.cz/2013/03/bhl-europe-is-finally-officially-live.html

New "LinkOut" tool by National Center for Biotechnology Information (NCBI) providing easy link to PubMed and GenBank data

Mon, 18 Mar 2013 10:48:00 +0200

A new "LinkOut" feature introduced by the National Center for Biotechnology Information (NCBI) NCBI’s allows the easy linking to content on PubMed and GenBank. Dryad has already introduced the feature benefitting from easy and fast linking of associated content to the two resources.

PubMed and GenBank, from the National Center for Biotechnology Information (NCBI), are hugely popular resources for searching and retrieving article abstracts and nucleotide sequence data, respectively. PubMed indexes the vast majority of the biomedical literature, and deposition of nucleotide sequences in GenBank or one of the other INSDC databases is a near universal requirement for publication in a scientific journal. LinkOut allows the data from an article to be distributed among repositories without compromising its discoverability.

Dryad, intends to expand on this feature in a couple of ways. First, it is planned to make Dryad content searchable via the PubMed and GenBank identifiers, which because of their wide use will provide a convenient gateway for other biomedical databases to link out to Dryad. Second, open web standards will be used to expose relationships between content in Dryad and other repositories, not just NCBI.

Original source: Dryad news and views

The large-scale EU project EU BON: Towards integration with its global counterpart GEO BON

Fri, 08 Mar 2013 14:22:18 +0200

The official Kickoff meeting of the Building the European Biodiversity Observation Network (EU BON) project, organized by the Museum für Naturkunde, Berlin, took place on 13-15 February 2013 to formally mark the beginning of the project and to set goals and objectives for the future. Among the hottest issues discussed was the integration of EU BON's framework with the Global Earth Biodiversity Observation Network project GEO BON and the Global Earth Observation System of Systems (GEOSS). Another intention set for the future is the enhanced communication and synchronization between the various partners and work packages.

The main objective set for EU BON is to facilitate with its contributions, and thus build a substantial part of GEO BON. EU BON Advisory Board, comprising ten leading experts in data management, biodiversity conservation and earth observation realms has been set up. Dr. Wouter Los - Chairman of the Expert centre for Taxonomic Identification (ETI), and 2nd Vice Chair of the Global Biodiversity Information Facility Governing Board (GBIF) was elected as a chair of the EU BON Advisory Board. It has been decided, with the directions and help of the EU BON's Advisory Board, to achieve that a substantial amount of work should be done towards a more comprehensive vision of the relationship between the two projects and the place EU BON takes as a major contributor.

Another aim delineated is working towards collaboration between the currently fragmented biodiversity data sources in Europe in an attempt to create an integrated network and framework for the benefit of the project objective itself, and GEO BON eventually. Dialogue and association with similar or relevant biodiversity projects and initiatives, on European and Global levels, are also encouraged. Organizing a conference is on the project's to do list.

Enhanced communication between the different partners and work packages has been outlined as the engine for achieving of the projects main objectives. A second official meeting has been already assigned for 2014 to measure the progress of EU BON and to set further goals. Meanwhile partners are already organizing workshops to work towards reflecting the directions for development currently set.

Future Brief of the EC

Fri, 08 Mar 2013 09:33:00 +0200

Science for Environment Policy
Earth Observation’s Potential for the EU Environment

http://ec.europa.eu/environment/integration/research/newsalert/pdf/FB6.pdf

The European Biodiversity Observation Network

Wed, 06 Mar 2013 14:03:00 +0200

The European Biodiversity Observation Network (EU BON), a European project on biodiversity data, was launched in December 2012. The Belgian Biodiversity Platform attended the symposium connected to the EU BON kick-off meeting in Berlin, Germany, on 11-12th February 2013.
The symposium entitled ‘Nature and Governance: Biodiversity Data, Science, and the Policy Interface’ highlighted the importance of biodiversity data for policy-making and research. The complexity of producing and collating data on an international scale involving different methods and disciplines was well illustrated. The importance of the accessibility of biodiversity data within an integrated system was well demonstrated - the sum of all contributions will in the end enable monitoring, forecasting and policy-making.
EU BON will create a substantial part of the Group on Earth’s Observation’s Biodiversity Observation Network (GEO BON) and will operate in support of biodiversity sciences and policy initiatives, such as the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) and the Convention on Biological Diversity (CBD).
EU BON will build on existing components, such as the Global Biodiversity Information Facility (GBIF), LifeWatch infrastructures and national biodiversity data centers. As Belgian GBIF node, the Belgian Biodiversity Platform can provide an important support to the development of EU BON. The Belgian partners in the EU BON project are the Royal Museum for Central Africa (RMCA), the Royal Belgian Institute of Natural Sciences (RBINS), and the National Botanic Garden of Belgium (Botanic Garden).
We will follow with interest the development in the EU BON project and will continue publishing data through GBIF. If you would like to support this initiative by having your data published on GBIF, please contact André Heughebaert (GBIF node manager), Dimitri Brosens or Kristina Articus (Biodiversity Experts).

Job alert: Two positions at Estación Biológica de Doñana (Spain)

Fri, 01 Mar 2013 17:28:00 +0200

Estación Biológica de Doñana seeks applicants for two positions with the following profiles.

1. Telecommunication Engineer or similar to work in the EU project Building the European Biodiversity Observation Network (EU BON)

The main tasks will be:

To validate the application of data architecture to data from testing sites, looking for accessibility to stakeholders.

To assist validate EUBON tools for the analysis and interpretation of data from the web server.

Candidate should catalyze the understanding between informatics and biologists, understanding data architecture, protocols for data warehouse and metadata registry and catalogue while keeping the ability of understanding requirements from both scientist and managers. Previous professional experience on biodiversity datasets, systematic protocols of data entrance (e.g. cybertracker software), data management (e.g. mysql), data mining and data patterns (e.g. Clementine software, neural networks) and web portals will be valued.

Period: Abril 2013- December 2016

Salary: 40000-45000 € per year before taxes

Candidates should send a curriculum vitae and contact details of two referencence persons to Carlos Rodríguez before March 15th.

2. Informatics engineer or similar to work in the EU project Building the European Biodiversity Observation Network (EU BON)

He/she will be the person in charge of data architecture that will guide the development, integration, and interoperability efforts within the project starting from the information architectures of relevant infrastructures such as GBIF; LTER, GOESS, GEOBON, LifeWatch, and INSPIRE. The architecture will highlight the relevant components of registry, portal, semantic mediation, workflows, and e-services. The task will address heterogeneity of projects and networks by ensuring that the developments of the project can be migrated to permanent infrastructures. He/she will be leading the creation of the European Biodiversity Data portal as the main GEOBON information hub. It is required to be fluent in English, being able of attend several international meetings and report the activity of the team.

Period: April 2013-February 2015

Salary: 40000-45000€ per year before taxes

Candidates should send a curriculum vitae and contact details of two reference persons to Carlos Rodríguez before March 15th.

The Future of Botanical Monography: Report from an international workshop, 12–16 March 2012, Smolenice, Slovak Republic

Thu, 21 Feb 2013 17:42:00 +0200

Monographs are fundamental for progress in systematic botany. They are the vehicles for circumscribing and naming taxa, determining distributions and ecology, assessing relationships for formal classification, and interpreting long-term and short-term dimensions of the evolutionary process. Despite their importance, fewer monographs are now being prepared by the newer generation of systematic botanists, who are understandably involved principally with DNA data and analysis, especially for answering phylogenetic, biogeographic, and population genetic questions. As monographs provide hypotheses regarding species boundaries and plant relationships, new insights in many plant groups are urgently needed. Increasing pressures on biodiversity, especially in tropical and developing regions of the world, emphasize this point. The results from a workshop (with 21 participants) reaffirm the central role that monographs play in systematic botany. But, rather than advocating abbreviated models for monographic products, we recommend a full presentation of relevant information. Electronic publication offers numerous means of illustration of taxa, habitats, characters, and statistical and phylogenetic analyses, which previously would have been prohibitively costly. Open Access and semantically enhanced linked electronic publications provide instant access to content from anywhere in the world, and at the same time link this content to all underlying data and digital resources used in the work. Resources in support of monography, especially databases and widely and easily accessible digital literature and specimens, are now more powerful than ever before, but interfacing and interoperability of databases are much needed. Priorities for new resources to be developed include an index of type collections and an online global chromosome database. Funding for sabbaticals for monographers to work uninterrupted on major projects is strongly encouraged. We recommend that doctoral students be assigned smaller genera, or natural portions of larger ones (subgenera, sections, etc.), to gain the necessary expertise for producing a monograph, including training in a broad array of data collection (e.g., morphology, anatomy, palynology, cytogenetics, DNA techniques, ecology, biogeography), data analysis (e.g., statistics, phylogenetics, models), and nomenclature. Training programs, supported by institutes, associations, and agencies, provide means for passing on procedures and perspectives of challenging botanical monography to the next generation of young systematists.

Source: Crespo, A., Crisci, J.V., Dorr, L.J., Ferencová, Z., Frodin, D., Geltman, D.V., Kilian, N., Linder, H.P., Lohmann, L.G., Oberprieler, C., Penev, L., Smith, G.F., Thomas, W., Tulig, M., Turland, N. & Zhang, X.-C. 2013. The Future of Botanical Monography: Report from an international workshop, 12–16 March 2012, Smolenice, Slovak Republic. Taxon 62: 4–20.

Data paper describes Antarctic biodiversity data gathered by 90 expeditions since 1956

Wed, 20 Feb 2013 12:23:00 +0200

Huge data encompassed into a unique georeferenced macrobenthic assemblages database

A new peer-reviewed data paper offers a comprehensive, open-access collection of georeferenced biological information about the Antarctic macrobenthic communities. The term macrobenthic refers to the visible-for-the-eye organisms that live near or on the sea bottom such as echinoderms, sponges, ascidians, crustaceans. The paper will help in coordinating biodiversity research and conservation activities on species living near the ocean bottom of the Antarctic.
The data paper "Antarctic macrobenthic communities: A compilation of circumpolar information", published in the open access journal Nature Conservation, describes data from approximately 90 different expeditions in the region since 1956 that have now been made openly available under a CC-By license. The paper provides unique georeferenced biological basic information for the planning of future coordinated research activities, for example those under the umbrella of the biology program Antarctic Thresholds – Ecosystem Resilience and Adaptation (AnT-ERA) of the Scientific Committee on Antarctic Research (SCAR). The information collected could be also beneficial for current conservation priorities such as the planning of Marine Protected Areas (MPAs) by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR).
The expeditions were organised by several famous explorers of the Antarctic. The area covered by the paper consists of almost the entire Southern Ocean, including sites covered by a single ice-shelf. The vast majority of information is from shelf areas around the continent at water depth shallower than 800m. The information from the different sources is then attributed to the classified macrobenthic assemblages. The results are made publicly available via the "Antarctic Biodiversity Facility" (data.biodiversity.aq).
A specific feature of this paper is that the manuscript was automatically generated from the Integrated Publishing Toolkit of the Antarctic Node of the Global Biodiversity Information Facility (AntaBIF IPT) and then submitted to the journal Nature Conservation through a novel workflow developed by GBIF and Pensoft Publishers. (see previous press release). Data are made freely available through the AntaBIF IPT, and sea-bed images of 214 localities through the data repository for geoscience and environmental data, PANGAEA- Data Publisher for Earth and Environmental Science (sample: http://doi.pangaea.de/10.1594/PANGAEA.198682).

Speaking from on board the research vessel 'Polarstern', the paper's lead author Prof. Julian Gutt of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Germany commented:

"The most important achievement of this paper is that data collected over many years and by various institutions are now not only freely available for anyone to download and use, but also properly described to facilitate future work in re-using the data. The Data Paper concept is certainly a great approach that multiplies the effect of funds and efforts spent by generations of scientists."

The data will also be used for a comprehensive Biogeography Atlas of the Southern Ocean project to be released during the XI SCAR Biology Symposium in Barcelona July 2013.

SOURCE: EurekAlert!

Stellenausschreibung: Wissenschaftliche/r Mitarbeiter/in für das EU BON Projekt am Museum für Naturkunde Berlin

Tue, 19 Feb 2013 14:21:00 +0200

Job alert: Research assistant at Museum für Naturkunde Berlin

The Museum für Naturkunde, Berlin offers a job opportunity with the EU BON project (WP1+WP2 tasks) - fluency in German is a must!
The position is set for a two-year contract with a possibility for further extensions.
More information about the position, the application process and job requirements is available below and in the document attached.
##

Zur Unterstützung der Beteiligung des MfN an EU BON ist am Museum für Naturkunde Berlin zum nächstmöglichen Zeitpunkt eine vorerst auf 2 Jahre befristete (mit der Option der Verlängerung)
Position eines/einer Wissenschaftlichen Mitarbeiters/in mit 75% der regelmäßigen wöchentlichen Arbeitszeit Entgeltgruppe E13 TV-L Berlin zu besetzen
Aufgabengebiete:
Wissenschaftliche Mitarbeit und eigenständige Durchführung spezifischer Aufgaben innerhalb des EU BON Projektes, vor allem innerhalb der Arbeitspakete 1 (Datenquellen) und 2 (Datenintegration), i.b.
- Datenrecherche und Erstellung von Übersichten für EU BON relevanter Daten- und Informationsquellen;
- Bewertung und Lückenanalyse bestehender Datenbanken und Informationssysteme zur Biodiversität;
- Harmonisierung, Aktualisierung und Koordinierung taxonomischer Referenz-Datenbanken i.b. für Europa;
- Unterstützung der Einführung und Verbesserung von Datenstandards zur Verbesserung der Integration und Interoperabilität unterschiedlicher Datenebenen
- Mitwirkung bei Erprobung neuer Datenerhebungsansätze und –verfahren, auch im Gelände
- Planung und Durchführung von Projekttreffen und -veranstaltungen
- Erstellung von Ergebnisberichten und wissenschaftlichen Präsentationen / Veröffentlichungen.

Bewerbungsschluss: 28.02.2013

EU BON featured in the January newsletter of the The Global Biodiversity Information Facility (GBIF)

Wed, 13 Feb 2013 13:36:18 +0200

The news about the International Symposium "Nature and Governance – Biodiversity Data, Science, and the Policy Interface" and the official EU BON Kickoff Meeting has been reflected in the January newsletter of the The Global Biodiversity Information Facility (GBIF).

GBIF only features high end biodiversity news and major projects. EU BON project summary is placed in the collaborations section of the newsletter and the two events are included in the Upcoming Events, pointed out to the readers' attention.

To view the GBIF newsletter for January, please go to: http://www.gbif.org/communications/resources/newsletters/, or see the newsletter PDF attached below.

International biodiversity data symposium to mark the kickoff of the EU BON project

Tue, 12 Feb 2013 17:45:15 +0200

The EU BON project is pleased to announce the International Symposium "Nature and Governance – Biodiversity Data, Science, and the Policy Interface", which was held in Berlin from 11 to 12 February. The symposium aimed at clarifying and popularizing EU BON's objectives prior to the official EU BON Kick-off Meeting held from 13 to 15 February 2013.

The symposium was hosted by the Museum für Naturkunde Berlin and brought together high-ranking speakers and guests from across the world to talk and discuss the different aspects of the EU BON Project. Among the main issues covered was the future of biodiversity information, the challenges in front of new data policies, new approaches in collecting information, and ways to engage the public in biodiversity monitoring and assessments.

The EU BON project was started on 1 December, 2012, and will continue for 4.5 years. The aim of EU BON is to build a substantial part and contribute to the Group on Earth Observation's Biodiversity Observation Network (GEO BON), through an innovative approach of integration of biodiversity information systems. The project, built as an answer to the need of a new integrated biodiversity data, will facilitate access to this knowledge and will effectively improve the work in the field of biodiversity observation in general.

###

For more information on the symposium and the events planned, please visit our programme page.

All interested parties are most welcome to attend the symposium or to follow it on Twitter, Facebook, or Google+.

Additional information

EU BON (2012) stands for "Building the European Biodiversity Observation Network" and is a European research project, financed by the 7th EU framework programme for research and development (FP7). EU BON seeks ways to better integrate biodiversity information and implement into policy and decision-making of biodiversity monitoring and management in the EU.

GEO BON stands for "Group on Earth Observations Biodiversity Observation Network". It coordinates activities relating to the Societal Benefit Area (SBA) on Biodiversity of the Global Earth Observation System of Systems (GEOSS). Some 100 governmental, inter-governmental and non-governmental organisations are collaborating through GEO BON to organise and improve terrestrial, freshwater and marine biodiversity observations globally and make their biodiversity data, information and forecasts more readily accessible to policymakers, managers, experts and other users. Moreover, GEO BON has been recognized by the Parties to the Convention on Biological Diversity. More information at: http://www.earthobservations.org/geobon.shtml.

The Norwegian Biodiversity Information Centre joins EU BON

Fri, 01 Feb 2013 16:40:00 +0200

The news about the new partnership has been officially disseminated through the website of the Norwegian Biodiversity Centre. The news piece discusses the importance of EU BON in the classification of biodiversity data and the experience and technology that the new partnership brings to it.
The article quotes the EU BON project as "the only EU project of its kind with a main purpose is to build an infrastructure that improves the exchange and dataflow throughout Europe." More can be found at: http://www.biodiversity.no/ArticleList.aspx?m=34&amid=11718
The news about the partnership has been also picked up by the English language Norwegian Source for science news ScienceNordic.
Earlier on the visibility and the popularity of the EU BON project have been also enhanced by a publication of the first newsletter by the Estonian science news website eBiodiversity, with credit given to the ambitious project aiming to build an European gateway for integrated biodiversity information.

Bringing big data to biodiversity

Tue, 29 Jan 2013 17:20:00 +0200

EU-funded project EU BON will build the European gateway for integrated biodiversity information

On 1st December 2012, 30 research institutions from 15 European countries, Brazil, Israel and the Philippines, and more than 30 associated partners started EU BON - "Building the European Biodiversity Observation Network". This €9 million, EU-funded research project aims to advance biodiversity knowledge by building a European gateway for biodiversity information, which will integrate a wide range of biodiversity data – both from on ground observations to remote sensing datasets – and make it accessible for scientists, policy makers, and the public.

The project plans to advance the technological platform for GEO BON (Group on Earth Observations Biodiversity Observation Network) to improve the assessment, analysis, visualisation and publishing of biodiversity information, and to enable better linkages between biodiversity and environmental data. EU BON will ensure a timely provision of integrated biodiversity information needed to meet the global change challenges and to contribute for next generation environmental data management at national and regional levels.

"Global problems arising from rapidly changing environmental conditions and biodiversity loss require internationally coordinated solutions" said the project coordinator Dr. Christoph Häuser from the Museum für Naturkunde – MfN, in Berlin, Germany. "Current biodiversity observation systems and environmental data are unbalanced in coverage and not integrated, which limits data analyses and implementation of environmental policies. A solution seems impossible without real integration of biodiversity data across different spatial, temporal, and societal scales", added Dr Häuser.

EU BON will deliver several important products, including a European integrated biodiversity portal, a roadmap for EU citizen sciences gateway for biodiversity data, an open data publishing and dissemination framework and toolkit, a policy paper on strategies for data mobilisation and use in conservation, a prototype of integrated, scalable, global biodiversity monitoring schemes, strategies for EU-integrated national and regional future biodiversity information infrastructures, and a sustainability plan for regional and global biodiversity information network.

The cooperation for data integration between biodiversity monitoring, ecological research, remote sensing and information users will result in proposing a set of best-practice recommendations and novel approaches with applicability under various environmental and societal conditions. A key task of EU BON is to harmonise future biodiversity monitoring and assessments and to engage wider society groups, such as citizen scientists and other communities of practise.

Although focussing primarily on European biodiversity and collaborating with major EU initiatives (e.g. LifeWatch and others), EU BON will also collaborate closely with worldwide efforts such as GEO BON, GBIF, the Convention on Biological Diversity (CBD), the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) and others. EU BON will be a valuable European contribution to the Global Earth Observation System of Systems (GEOSS), and be built on the GEO principles of open data sharing.

The kick-off meeting of EU BON will take place on 13-15 February 2013 at the Museum für Naturkunde – MfN in Berlin, Germany and will be preceded by a symposium "Nature and governance: biodiversity data, science and policy interface" on 11-12 February 2013.

###

Additional information

EU BON (2012) stands for "Building the European Biodiversity Observation Network" and is an European research project, financed by the 7th EU framework programme for research and development (FP7). EU BON seeks ways to better integrate biodiversity information and implement into policy and decision-making of biodiversity monitoring and management in the EU.

GEOSS stands for Global Earth Observation System of Systems, built by the Group on Earth Observations (GEO). GEO is constructing GEOSS on the basis of a 10-Year Implementation Plan for the period 2005 to 2015. The Plan defines a vision statement for GEOSS, its purpose and scope, expected benefits, and the nine "Societal Benefit Areas" of disasters, health, energy, climate, water, weather, ecosystems, agriculture and biodiversity.

Symposium: Nature and Governance – Biodiversity Data, Science, and the Policy Interface

Sun, 16 Dec 2012 16:34:44 +0200

The EU BON project which is coordinated by the Museum für Naturkunde in Berlin/Germany has started on 1 December and will continue for 4.5 years. The EU BON Kickoff Meeting will be held in Berlin from 13 to 15 February 2013.

With respect to EU BON’s objectives the International Symposium "Nature and Governance – Biodiversity Data, Science, and the Policy Interface" will be held prior to the EU BON Kickoff Meeting from 11 to 12 February in Berlin with high-ranking speakers. You are most welcome to attend the Symposium.

The Museum für Naturkunde Berlin is pleased to host this international symposium and will bring together high-ranking speakers and guests from worldwide to talk and discuss about these

Major Topics:

What (data) policy needs
The future of biodiversity information: new ways for generating, managing, and integrating biodiversity data
How new approaches / models can link scales and disciplines
Broadening the base and opening up: new ways to engage the public and stakeholders in biodiversity monitoring and assessments
Résumé / conclusions

For more details, please have a look at the programme page.

The 1st day of the Symposium and the reception will be held "under the dinosaurs" in the central exhibition hall of the Museum für Naturkunde in Berlin.

The 2nd day will be held in the Seminaris Conference Center in the quiet south-west of Berlin. The closing of the Symposium will be celebrated as "Come together & Ice-Breaker for EU BON Kickoff Meeting" in the nearby beautiful Large Green House of the Botanic Garden Berlin.

If you want to take part, please register at the registration page.