The European Commission adopted a new strategy for encouraging the use of green infrastructure, and for ensuring that the enhancement of natural processes becomes a systematic part of spatial planning. Green Infrastructure is a tried and tested tool that uses nature to provide ecological, economic and social benefits. Instead of building flood protection infrastructure, for example, a green infrastructure solution would be to allow a natural wetland to absorb the excess water from heavy rain.

Green infrastructure is often cheaper and more durable than alternatives provided through conventional civil engineering. Biodiversity-rich parks, green spaces and fresh air corridors can for example mitigate the negative effects of summer heat waves. In addition to the health and environmental benefits, green infrastructure also brings multiple social benefits: it creates jobs and makes cities more appealing places to live and work. And it allows for wildlife to thrive, even in an urban context.

Environment Commissioner Janez Potočnik said: "Building green infrastructure is often a good investment for nature, for the economy and for jobs. We should provide society with solutions that work with nature instead of against it, where that makes economic and environmental sense."

More about the EC Green Infrastructure here:


The San Francisco Declaration on Research Assessment (DORA) was initiated by the American Society for Cell Biology (ASCB) together with a group of editors and publishers of scholarly journals after a meeting in  December 2012 during the ASCB Annual Meeting in San Francisco. The document recognizes the need to improve the ways in which the outputs of scientific research are evaluated.

DORA puts into question the use of Journal Impact Factor as a main tool for assessment, and proposes the consideration of various other factors towards more sophisticated and meaningful approaches. DORA is a worldwide initiative covering all scholarly disciplines.

To read the whole declaration, please follow the link:


Posted by Eu Bon

Research in Nature Climate Change uses data on 50,000 common plants and animals to predict worldwide range losses without urgent action to limit emissions

Climate change could dramatically reduce the geographic ranges of thousands of common plant and animal species during this century, according to research using data made freely available online through GBIF.
The information on the current location of common species of plants, mammals, birds, reptiles and amphibians was taken from around 170 million individual data records published freely online through GBIF by some 200 different institutions around the world. The records include museum specimens, data from scientific expeditions and the observations of thousands of volunteer ‘citizen scientists’.
One of the co-authors of the study, Jeff Price of the University of East Anglia’s School of Environmental Sciences, United Kingdom, said: "Without free and open access to massive amounts of data such as those made available online through GBIF, no individual researcher is able to contact every country, every museum, every scientist holding the data and pull it all together. So this research would not be possible without GBIF and its global community of researchers and volunteers who make their data freely available."
The lead author of the study, Dr Rachel Warren, also from UEA’s School of Environmental Sciences and the Tyndall Centre, said: "While there has been much research on the effect of climate change on rare and endangered species, little has been known about how an increase in global temperature will affect more common species."Our research predicts that climate change will greatly reduce the diversity of even very common species found in most parts of the world. This loss of global-scale biodiversity would significantly impoverish the biosphere and the ecosystem services it provides. The good news is that our research provides crucial new evidence of how swift action to reduce CO2 and other greenhouse gases can prevent the biodiversity loss by reducing the amount of global warming to 2 degrees Celsius rather than 4 degrees. This would also buy time – up to four decades - for plants and animals to adapt to the remaining 2 degrees of climate change."

Posted by Eu Bon

The data repository invites community input on the future of data archiving at upcoming membership meeting

Dryad, a repository for data underlying the international scientific and medical literature, works with a variety of journals, societies and publishers to archive research data at the time of publication.  The project began in 2009 and has published more than 3,000 data packages.  In 2012, Dryad incorporated as a nonprofit organization with the mission to make scientific and medical research data permanently available to all researchers and educators free-of-charge without barriers to reuse.
For the past four years, Dryad has worked with its stakeholders to develop a sustainability plan to realize this vision.  Central to the sustainability plan is a one-time submission fee that will offset the actual costs of preserving data indefinitely. A variety of pricing plans are available for journals and other organizations such societies, funders and libraries to purchase discounted submission fees on behalf of their researchers.  For data not covered by a pricing plan, the researcher will be asked to pay upon submission, with waivers provided to researchers from World Bank low and lower-middle income economies. Submission fees will apply to all new submissions starting September 2013.  Dryad will also be supported in part by its membership, by grants for research and innovation, and by donors. Membership in Dryad is open to any organization that supports research and education.  Dryad is pleased to include Pensoft Publishers among its Charter Members.
The Dryad Membership meeting, to be held in Oxford, UK on Friday, May 24 is open to members, prospective members, researchers and other interested parties.  Attendees will hear about recent and upcoming developments in the repository and the nonprofit organization. In addition, there will be an Emerging Issues Forum with presentations from the community about future directions for Dryad, its members, and partner journals, including models for the technical and peer review of data, ideas for promoting the adoption of data citations, measuring data reuse, funder perspectives on the use of research grants for data management costs and the relevance of larger data networks.  
Dryad’s Membership Meeting is part of a series of free public events in Oxford spotlighting trends in scholarly communication with an emphasis on research data, including a Symposium on the Now and Future of Data Publication on Wednesday, May 22nd and an ORCID Outreach Meeting with a special joint Dryad-ORCID Symposium on Research Attribution on Thursday, May 23rd. Registration for these events closes on May 13th. Remote attendance will be available for those unable to attend in person.

For more information about submitting data, becoming a member or the sustainability plan, please visit The website also offers an Ideas Forum where people can make their voice heard by suggesting and voting for new features and offering comments.

Laura Wendell, Executive Director
+1-919-668-4005 or +1-919-423-3889

Posted by Eu Bon

The "Environmental research: Experiences on best practices towards Horizon 2020" conference will be held the 30th of May 2013 in Brussels at the Museum of Natural Sciences.  Organizers of the event are the APRE (Agency for the Promotion of European Research), and the ENVIMPACT consortium.

The event will gather European Commission representatives,  researchers, FP7 project's participants, governmental, academic and industrial stakeholders of the Central East European countries with the aim of presenting the current and future tools and trends for dissemination and exploitation of R&D results with a special focus on the thematic areas of research in air pollution, chemical pollution and environmental technologies, especially in the Central-Eastern European (CEE) countries.

The agenda of the conference and the press release are downloadable at the link:

The registration is free, please register at

ENVIMPACT project has been launched on 1st January 2011. This initiative is funded by the European Commission under FP7, DG Research and Innovation, with the objectives to improve the current communication  and dissemination of environmental research results deriving from Central-Eastern European (CEE) countries.

Posted by Eu Bon

November 19-22, 2013 Alexander Technological Educational Institute of Thessaloniki, Greece

Continuing the successful mission of previous MTSR Conferences (MTSR'05, MTSR'07, MTSR'09, MTSR'10, MTSR'11 and MTSR’12), the seventh International Conference on Metadata and Semantics Research (MTSR'13) aims to bring together scholars and practitioners that share a common interest in the interdisciplinary field of metadata, linked data and ontologies. Participants will share novel knowledge and best practice in the implementation of these semantic technologies across diverse types of Information Environments and applications. These include Cultural Informatics; Open Access Repositories & Digital Libraries; E-learning applications; Search Engine Optimisation & Information Retrieval; Research Information Systems and Infrastructures; e-Science and e-Social Science applications; Agriculture, Food and Environment; Bio-Health & Medical Information Systems.

Posted by Eu Bon

A main obstacle to reach the 2010 biodiversity goals and to implement the European Biodiversity Strategy is lacking integration of biodiversity aspects into political, economic, and management decisions in different sectors mainly due to knowledge gaps. EU BON will provide access to sound data sources and scientific knowledge that is reliable, relevant, up-todate, and publicly available. Europe maintains substantial capacities to generate and manage such knowledge and to provide data relevant to assessing and managing our biological resources. These capacities concern research and technology development, tools for information management and infrastructure, and procedures for the development and implementation of well-informed environmental policies. 

In order to meet the demands of the main political stakeholders in the EU, in this workshop an overview of the project will be given and first results will be shown summarized in the first show case which is dealing with datasets in relation to political targets and indicators. In addition, the idea how the science–policy/management interface can function for example via the planned European Biodiversity Portal will be presented and the requirements for policy (political administration) discussed.

Results of this first stakeholder round table will be documented and passed back to the project in order to increase its relevance. Next stakeholder round tables can be used to evaluate the progress of the project with regard to serving the demands of EC, EEA, GEO BON, IPBES and other stakeholders.

A new article "A decadal view of biodiversity informatics: challenges and priorities"  published by BMC Ecology focuses on the challenges and perspectives for biodiversity informatics after a decade of development. The authors Alex Hardisty and Dave Roberts alongside 77 contributions from the biodiversity informatics community share experience and set future directions of biodiversity informatics as a tool for addressing conservation and ecological issues.

Biodiversity informatics plays a central enabling role in the research community's efforts to address scientific conservation and sustainability issues. This community consultation paper positions the role of biodiversity informatics, for the next decade, presenting the actions needed to link the various biodiversity infrastructures invisibly and to facilitate understanding that can support both business and policy-makers. The community considers the goal in biodiversity informatics to be full integration of the biodiversity research community, including citizens’ science, through a commonly-shared, sustainable e-infrastructure across all sub-disciplines that reliably serves science and society alike.

The full text of the article can be accessed here.

Posted by Eu Bon

The newest newsletter of the BioVel project is now available, offering a range of biodiversity related news, including brief coverage of the EU BON Kick-off and International Symposium Workshop in February, 2013. Among the other stories covered are:

  •  Letter from Alex Hardisty, Project Coordinator
  • Running Workflows Just Got a Whole Lot Simpler
  • Friends of BioVeL: Friendships and collaborations are also blooming! (featuring news about: LifeWatch-BioVeL cooperation;; i4Life project; Micro B3 and GENSC are now friends of BioVeL.

The newsletter also contains information about the upcoming workflows and research within the project, as well about events planned for the future.

To read the article and find out more about the news stories covered click here.


Posted by Eu Bon

The Helmholtz Centre for Environmental Research – UFZ is now offering a position for Quantitative Ecologist (Postdoc) in their Department of Conservation Biology. The position is open to both male and female applicants and it runs for 42 months, starting latest on 01.08.2013 in Leipzig, Germany. Salary will be according to the appropriate civil service level TVÖD, salary group 13.

The successful candidate will be focusing on optimizing monitoring designs at different scales under field constraints and assessinguncertainty in biodiversity trend analyses. He/She will have a PhD in an ecological discipline relevant for the research topic (e.g. population biology), excellent statistical and computing skills, a distinguished publication record, experience in international cooperation and strong interest both in theoretical and applied biodiversity conservation. Fluency in English in speech and writing is essential, some knowledge of German is of advantage.

The position will be part of the large-integrating EU-project EU BON "Building the European BiodiversityObservation Network". The overall goal of the project is to integrate and harmonize European data relevant for biodiversity monitoring and to develop prototypes for biodiversity monitoring for the global GEO BON initiative. 30 partner organisations form the EU BON consortium. Within this consortium the applicant will have the following responsibilities:
• on improving current approaches to monitoring species both from a theoretical and a practical perspective, with a focus on population processes
• link trend data to environmental drivers at different scales
• quantify uncertainty across all steps from data collection to interpretation of analysed data
• Contribute to the management of the workpackage "Link environment to biodiversity: Analyses of patterns, processes and trends"
• Contribute to the compilation of information on existing monitoring programs
• Feed results into a science-policy dialogue
• Disseminate results for scientists and applied users
Further Information:
Prof. Dr. Klaus Henle, Tel. ++49-(0)341-235 1270, e-mail:
Please send your application until 19.05.2013 under Code Digit 37/2013 to the Human Resource department of the Helmholtz Centre for Environmental Research, PO Box 500136, 04301 Leipzig, Germany, or by e-mail to
For further information please see the attached pdf file below.

Posted by Eubon

The first meeting of Work Package 5 (EU BON testing and validation of concepts, tools, and services) was held between 2nd and 4th April, 2013 in the Doñana Biological Station, in Spain. 23 people from 10 different institutions (7 of the EU BON consortium) worked towards building a draft on Principles and Guidelines for establishing and operating EU BON test sites.

During the meeting the members agreed on starting documenting each of the sites, using a common format to be decided in May on the Informatics Task Force meeting of WP2 (Data integration and interoperability) in Norway. A data inventory will also be built in each of the sites, adding monitoring protocols in stepwise fashion.

In addition the meeting served to get a better view of the variety of Ecosystems in Doñana as well as the monitoring protocols that are being conducted in this area. 

One year of experience and perspectives for the future from Pensoft Publishers and GBIF

In 2012 GBIF and Pensoft pioneered a workflow between the GBIF’s Integrated Publishing Toolkit (IPT) and Pensoft’s journals ZooKeys, PhytoKeys, MycoKeys, Nature Conservation, etc. to automatically export metadata into the form of a data paper manuscript, based on the Ecological Metadata Language (EML). One year on they share their experience and perspectives for the future of data publishing.

In its essence, a Data Paper is a scholarly journal publication whose primary purpose is to describe a dataset or a group of datasets, rather than to report a research investigation. As such, it contains facts about data, not hypotheses and arguments in support of the data, as found in a conventional research article. The future of data publishing according to Pensoft Publishers and GBIF, lies in the elaborating of formats for descriptions of various kinds of data (ecological, morphological, genomic, environmental, etc.), as well as in linking to various platforms (GBIF, Scratchpads, Dryad, EDIT, CBOL, etc.).

More about the collaboration and experience of Pensoft Publishers and GBIF learn from their joint poster available here.

Posted by Eu Bon

Join the online community of EU BON and create buzz around the project. Take full advantage of our social network channels to interact with stakeholders and contribute to the EU BON discussion. Get an easy access and the latest updates on news and events around the project. You are a click away from making a difference to the project’s visibility.

Like, follow or join EU BON Social Media and get involved in the community now!

Like us on Facebook
Get the latest news in pictures and videos 
Interact and join a community of like-minded supporters
Find out about events and group activities
Follow us on Twitter
Get short and up-to-the-point updates on the latest news
Take part in live discussions during conferences and conventions
Join and interact with a wider bioinformatics community 
Join us on Google+
Join a growing social community 
Get the latest project and news alongside relevant media
Promote the project and get involved in discussions in your circles
Join us on LinkedIn
Get in touch with professionals in the area of research 
Contribute to discussions
Promote your project in a professional community


Posted by Eu Bon

The Research Data Alliance (RDA) has been recently launched. Its First Plenary took place between 18-20 March, 2013 in Gothenburg, Sweden. The hot topic of the Plenary was the RDA vision towards open access data without barriers. The 3 days of meetings and working sessions brought the research data community together to contribute and set milestones for the future work of the RDA towards open access data-driven innovation. 

Over the last decade, significant investments have been made  all over the globe
for developing scientific  data infrastructures to support the work of research communities and improving shared access to data.  There is a  common understanding that solutions must be global and that the development of an integrated and interoperable data domain can only be achieved through increased global cooperation.

As "big data" emerges as an international priority, the Research Data Alliance (RDA) is a newly formed organization whose goal is to accelerate data-driven innovation world-wide through research data sharing and exchange.

At its first Plenary, the RDA was launched by sponsors from the European Commission, the U. S. Government and the Australian Government and leaders in the data community. The Plenary was used as a working meeting to accelerate discussion, Working and Interest Group interaction, and data community development.

ICSU-WDS Data Publication Charter:

On March 18 2013 the BHL-Europe portal has gone officially live. The Biodiversity heritage library for Europe project began in 2009 and joins noteworthy European museum and botanical gardens, including some in the USA as well. The primary goal of the project was to create an indexed archival system for digitized scientific literature, and free access to this literature via a multifunctional portal (
The portal makes available 6,149 books containing one million pages from 92 content providers at the moment, but this is just the initial offering. New material is added every day, and the growth is projected to increase over time. The BHL-Europe portal (and other international sources) is linked to the Biodiversity Library Exhibition  platform, which publishes selected literature in the form of interesting themes, information and an attractive design. Thanks to the specific presentation of literature and interesting scientific items, the platform has significant educational potential.

You can access the BHL-Europe portal here:
Read more about the portal on the official BHL blog:

A new "LinkOut" feature introduced by the National Center for Biotechnology Information (NCBI) NCBI’s allows the easy linking to content on PubMed and GenBank.  Dryad has already introduced the feature benefitting from easy and fast linking of associated content to the two resources.

PubMed and GenBank, from the National Center for Biotechnology Information (NCBI), are hugely popular resources for searching and retrieving article abstracts and nucleotide sequence data, respectively.  PubMed indexes the vast majority of the biomedical literature, and deposition of nucleotide sequences in GenBank or one of the other INSDC databases is a near universal requirement for publication in a scientific journal. LinkOut allows the data from an article to be distributed among repositories without compromising its discoverability.

Dryad, intends to expand on this feature in a couple of ways. First, it is planned to make Dryad content searchable via the PubMed and GenBank identifiers, which because of their wide use will provide a convenient gateway for other biomedical databases to link out to Dryad.  Second, open web standards will be used to expose relationships between content in Dryad and other repositories, not just NCBI.

Original source: Dryad news and views

Posted by Pensoft
The large-scale EU project EU BON: Towards integration with its global counterpart GEO BON
The project's main objective is to support the Group on Earth Observations Biodiversity Observation Network (GEO BON) and Global Earth Observation System of Systems (GEOSS)

The official Kickoff meeting of the Building the European Biodiversity Observation Network (EU BON) project, organized by the Museum für Naturkunde, Berlin, took place on 13-15 February 2013 to formally mark the beginning of the project and to set goals and objectives for the future. Among the hottest issues discussed was the integration of EU BON's framework with the Global Earth Biodiversity Observation Network project GEO BON and the Global Earth Observation System of Systems (GEOSS). Another intention set for the future is the enhanced communication and synchronization between the various partners and work packages.

The main objective set for EU BON is to facilitate with its contributions, and thus build a substantial part of GEO BON. EU BON Advisory Board, comprising ten leading experts in data management, biodiversity conservation and earth observation realms has been set up. Dr. Wouter Los - Chairman of the Expert centre for Taxonomic Identification (ETI), and 2nd Vice Chair of the Global Biodiversity Information Facility Governing Board (GBIF) was elected as a chair of the EU BON Advisory Board. It has been decided, with the directions and help of the EU BON's Advisory Board, to achieve that a substantial amount of work should be done towards a more comprehensive vision of the relationship between the two projects and the place EU BON takes as a major contributor.

Another aim delineated is working towards collaboration between the currently fragmented biodiversity data sources in Europe in an attempt to create an integrated network and framework for the benefit of the project objective itself, and GEO BON eventually. Dialogue and association with similar or relevant biodiversity projects and initiatives, on European and Global levels, are also encouraged. Organizing a conference is on the project's to do list.

Enhanced communication between the different partners and work packages has been outlined as the engine for achieving of the projects main objectives. A second official meeting has been already assigned for 2014 to measure the progress of EU BON and to set further goals. Meanwhile partners are already organizing workshops to work towards reflecting the directions for development currently set.

Posted by Pensoft
Future Brief of the EC
Earth Observation’s Potential for the EU Environment

Science for Environment Policy
Earth Observation’s Potential for the EU Environment

The European Biodiversity Observation Network (EU BON), a European project on biodiversity data, was launched in December 2012. The Belgian Biodiversity Platform attended the symposium connected to the EU BON kick-off meeting in Berlin, Germany, on 11-12th February 2013.
The symposium entitled ‘Nature and Governance: Biodiversity Data, Science, and the Policy Interface’ highlighted the importance of biodiversity data for policy-making and research.  The complexity of producing and collating data on an international scale involving different methods and disciplines was well illustrated. The importance of the accessibility of biodiversity data within an integrated system was well demonstrated - the sum of all contributions will in the end enable monitoring, forecasting and policy-making.
EU BON will create a substantial part of the Group on Earth’s Observation’s Biodiversity Observation Network (GEO BON) and will operate in support of biodiversity sciences and policy initiatives, such as the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) and the Convention on Biological Diversity (CBD).
EU BON will build on existing components, such as the Global Biodiversity Information Facility (GBIF), LifeWatch infrastructures and national biodiversity data centers. As Belgian GBIF node, the Belgian Biodiversity Platform can provide an important support to the development of EU BON. The Belgian partners in the EU BON project are the Royal Museum for Central Africa (RMCA), the Royal Belgian Institute of Natural Sciences (RBINS), and the National Botanic Garden of Belgium (Botanic Garden).
We will follow with interest the development in the EU BON project and will continue publishing data through GBIF. If you would like to support this initiative by having your data published on GBIF, please contact André Heughebaert (GBIF node manager), Dimitri Brosens or Kristina Articus (Biodiversity Experts).

Estación Biológica de Doñana seeks applicants for two positions with the following profiles.
1. Telecommunication Engineer or similar to work in the EU project Building the European Biodiversity Observation Network (EU BON)
The main tasks will be:
To validate the application of data architecture to data from testing sites, looking for accessibility to stakeholders.
To assist validate EUBON tools for the analysis and interpretation of data from the web server.
Candidate should catalyze the understanding between informatics and biologists, understanding data architecture, protocols for data warehouse and metadata registry and catalogue while keeping the ability of understanding requirements from both scientist and managers. Previous professional experience on biodiversity datasets, systematic protocols of data entrance (e.g. cybertracker software), data management (e.g. mysql), data mining and data patterns (e.g. Clementine software, neural networks) and web portals will be valued.
Period: Abril 2013- December 2016
Salary: 40000-45000 € per year before taxes
Candidates should send a curriculum vitae and contact details of two referencence persons to Carlos Rodríguez before March 15th.
2. Informatics engineer or similar to work in the EU project Building the European Biodiversity Observation Network (EU BON)
He/she will be the person in charge of data architecture that will guide the development, integration, and interoperability efforts within the project starting from the information architectures of relevant infrastructures such as GBIF; LTER, GOESS, GEOBON, LifeWatch, and INSPIRE. The architecture will highlight the relevant components of registry, portal, semantic mediation, workflows, and e-services. The task will address heterogeneity of projects and networks by ensuring that the developments of the project can be migrated to permanent infrastructures. He/she will be leading the creation of the European Biodiversity Data portal as the main GEOBON information hub. It is required to be fluent in English, being able of attend several international meetings and report the activity of the team.
Period: April 2013-February 2015
Salary: 40000-45000€ per year before taxes
Candidates should send a curriculum vitae and contact details of two reference persons to Carlos Rodríguez before March 15th.

Posted by Eu Bon

Members area

Lost your password?


flag big This project has received funding from the European Union’s Seventh Programme for research, technological development and demonstration under grant agreement No 308454.